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The map label for this gene is ydhC [H]

Identifier: 91786327

GI number: 91786327

Start: 430167

End: 430931

Strand: Reverse

Name: ydhC [H]

Synonym: Bpro_0417

Alternate gene names: 91786327

Gene position: 430931-430167 (Counterclockwise)

Preceding gene: 91786328

Following gene: 91786326

Centisome position: 8.29

GC content: 66.93

Gene sequence:

>765_bases
GTGAGAAACTATGCTCCGGCGCGCAAACCCCATAACGAGACAAACCGCATGACTTTTTCCTCCCCATCCGATACCGCTTC
CTTTGAATCCGTCGAGGCCCCCGATCTGGTCGAGCTGGTCGAGGCCCAATTGACGCGCGCCATCGTGGAGGGGCGCCTGG
CGCCCGGCAGCCGCATCGTGGAGGCCGACATCGCGCGCCGCATGGGCGTGAGCCGGGCGCCGGTGCGCGAGGCCGCACGC
CGGCTGGAGCGCCAGGGCGTGCTGGTCGCGCGGCCGCGCCATGGTTTCGCGGTGCGGACCATCAGCGTGCAGGAGATCGA
CGACATTTTCGAGGTACGCATCAGTCTCGAAATGACGGCGATCGAACGGGCCTGCAGCAAGGCCGACGACGCCGGGCTGG
CCCGCCTTCAGGAACTCGTGCATGCCATGGTGCGCGAGGCGCCCACGCAGCCGCAGCACCAGCGCATCGCAGCCGATCTG
GCGTTCCACACCCTGATCTGCGAACTGTCGGGCAACGCCCAGCTGCACCGCATCTTCTCCAACACCCAGACCGAGATGCG
GATGATCATTGCACTGTGCGATGCCGTCTACCACGACCCCTCCGGCATGGCCGAGACCCATCAACCCATCGCCGATGCGC
TGCTGCGCAGAGACGCAACCGCCGCCCGTGCCGCCATGCGCCTGCATCTGGACGATGCCTGGCAGCATGTGCGGGCGCTG
TTCGTGAAGCAGCACGGCGCCGCGTCCGCATCTTCCAACCCCTGA

Upstream 100 bases:

>100_bases
TCGCGATGTCCGGCATTGCGCTGATCGTGGCCGCGGGCATCTACCTGGCGCGCTCCCGGCCGGCGGGCCCCGCCGTCCTG
GCCGCTGCGCGCGCAGGCGG

Downstream 100 bases:

>100_bases
TTCCGAGGACCCCTTCGATGAAAGTCGTCTACAGCGATCAGCACAAAGACCACGACCCGCAGCTCTTCATGGTGCGCGGT
CGATTGAAGCGCAGCAACGA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 254; Mature: 254

Protein sequence:

>254_residues
MRNYAPARKPHNETNRMTFSSPSDTASFESVEAPDLVELVEAQLTRAIVEGRLAPGSRIVEADIARRMGVSRAPVREAAR
RLERQGVLVARPRHGFAVRTISVQEIDDIFEVRISLEMTAIERACSKADDAGLARLQELVHAMVREAPTQPQHQRIAADL
AFHTLICELSGNAQLHRIFSNTQTEMRMIIALCDAVYHDPSGMAETHQPIADALLRRDATAARAAMRLHLDDAWQHVRAL
FVKQHGAASASSNP

Sequences:

>Translated_254_residues
MRNYAPARKPHNETNRMTFSSPSDTASFESVEAPDLVELVEAQLTRAIVEGRLAPGSRIVEADIARRMGVSRAPVREAAR
RLERQGVLVARPRHGFAVRTISVQEIDDIFEVRISLEMTAIERACSKADDAGLARLQELVHAMVREAPTQPQHQRIAADL
AFHTLICELSGNAQLHRIFSNTQTEMRMIIALCDAVYHDPSGMAETHQPIADALLRRDATAARAAMRLHLDDAWQHVRAL
FVKQHGAASASSNP
>Mature_254_residues
MRNYAPARKPHNETNRMTFSSPSDTASFESVEAPDLVELVEAQLTRAIVEGRLAPGSRIVEADIARRMGVSRAPVREAAR
RLERQGVLVARPRHGFAVRTISVQEIDDIFEVRISLEMTAIERACSKADDAGLARLQELVHAMVREAPTQPQHQRIAADL
AFHTLICELSGNAQLHRIFSNTQTEMRMIIALCDAVYHDPSGMAETHQPIADALLRRDATAARAAMRLHLDDAWQHVRAL
FVKQHGAASASSNP

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=197, Percent_Identity=25.8883248730964, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI87081914, Length=104, Percent_Identity=33.6538461538462, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 28136; Mature: 28136

Theoretical pI: Translated: 7.39; Mature: 7.39

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNYAPARKPHNETNRMTFSSPSDTASFESVEAPDLVELVEAQLTRAIVEGRLAPGSRIV
CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHH
EADIARRMGVSRAPVREAARRLERQGVLVARPRHGFAVRTISVQEIDDIFEVRISLEMTA
HHHHHHHCCCCCCHHHHHHHHHHHCCCEEECCCCCEEEEEEEHHHHHHHHHHHHHHHHHH
IERACSKADDAGLARLQELVHAMVREAPTQPQHQRIAADLAFHTLICELSGNAQLHRIFS
HHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
NTQTEMRMIIALCDAVYHDPSGMAETHQPIADALLRRDATAARAAMRLHLDDAWQHVRAL
CHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
FVKQHGAASASSNP
HHHHCCCCCCCCCC
>Mature Secondary Structure
MRNYAPARKPHNETNRMTFSSPSDTASFESVEAPDLVELVEAQLTRAIVEGRLAPGSRIV
CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHH
EADIARRMGVSRAPVREAARRLERQGVLVARPRHGFAVRTISVQEIDDIFEVRISLEMTA
HHHHHHHCCCCCCHHHHHHHHHHHCCCEEECCCCCEEEEEEEHHHHHHHHHHHHHHHHHH
IERACSKADDAGLARLQELVHAMVREAPTQPQHQRIAADLAFHTLICELSGNAQLHRIFS
HHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
NTQTEMRMIIALCDAVYHDPSGMAETHQPIADALLRRDATAARAAMRLHLDDAWQHVRAL
CHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
FVKQHGAASASSNP
HHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]