| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is creB [H]
Identifier: 91786148
GI number: 91786148
Start: 260435
End: 261115
Strand: Reverse
Name: creB [H]
Synonym: Bpro_0237
Alternate gene names: 91786148
Gene position: 261115-260435 (Counterclockwise)
Preceding gene: 91786149
Following gene: 91786147
Centisome position: 5.02
GC content: 68.87
Gene sequence:
>681_bases ATGACCGGCGCGCGCGTTCTGCTGGTTGAGGATGACCCGGCCATCGCCCGGTCCATCGTCTTTGCGCTCGAACGCGATGG CATCAACCTCACGCACAGCCTGCTGCTCAGCGATGCGCGCCGGCAACTGCTGGTGCGCACGCCCGACGTGGTGATCCTGG ACATCGGCCTGCCCGACGGCAGCGGCCTTGATTTGTGCAAGGAGCTGCGCGCAGCCGGCAGCATGCCAGTGCTGATTCTC AGCGCGCACGGCGAGGAAATCGACCGGGTACTCGGGCTGGAGCTGGGCGCCGACGACTACCTGAGCAAACCCTTCAGCCC GCGCGAGCTGCTGGCGCGCGTGCGCAGCCTGCTCAGGCGCGCGCGCATGCCGCCCGCAGCGCCGGTGCCTGCCAATGGCC CCTTCGAGATCGACGCAGCGGGCCAGCGCATGCGCCTGCATGGCCGTCCGCTCAACCTGACACGCCGGGAGTTCGGCCTG CTCGCCGACCTGCTGCACCATCGCGGCCGCATACGCTCACGCGACGAATTGCTGGGCGCAGTCTGGGGTGCCGACTCGGA CAGCACCGACCGCACGGTGGACACCCACATCAAGACCCTGCGCGCCAAGCTGCAGGAGGCCGCGCCGGAGCGCGACTACA TCGTGACGCACCGCGGCATGGGCTACTGCCTGGAGATATGA
Upstream 100 bases:
>100_bases AAACCTTGGGGCCCACACTTTTCACTTCAAGCCTTCGGCGCGCTGCCCCTTGCATGACGCATGGGGCTCATGTTGCGTGG GCGGCTCTGCGGTGCTGCGG
Downstream 100 bases:
>100_bases ACACCCCCGTGGCTGCGCTTCGCTTCGCCTCCCCCCTTGCAGGGGGCGACGCCTGTGGTCTGGCAAAGCCAGTCCCACGG CGCCTGCTGGCAAAAGCCTG
Product: two component transcriptional regulator
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 226; Mature: 225
Protein sequence:
>226_residues MTGARVLLVEDDPAIARSIVFALERDGINLTHSLLLSDARRQLLVRTPDVVILDIGLPDGSGLDLCKELRAAGSMPVLIL SAHGEEIDRVLGLELGADDYLSKPFSPRELLARVRSLLRRARMPPAAPVPANGPFEIDAAGQRMRLHGRPLNLTRREFGL LADLLHHRGRIRSRDELLGAVWGADSDSTDRTVDTHIKTLRAKLQEAAPERDYIVTHRGMGYCLEI
Sequences:
>Translated_226_residues MTGARVLLVEDDPAIARSIVFALERDGINLTHSLLLSDARRQLLVRTPDVVILDIGLPDGSGLDLCKELRAAGSMPVLIL SAHGEEIDRVLGLELGADDYLSKPFSPRELLARVRSLLRRARMPPAAPVPANGPFEIDAAGQRMRLHGRPLNLTRREFGL LADLLHHRGRIRSRDELLGAVWGADSDSTDRTVDTHIKTLRAKLQEAAPERDYIVTHRGMGYCLEI >Mature_225_residues TGARVLLVEDDPAIARSIVFALERDGINLTHSLLLSDARRQLLVRTPDVVILDIGLPDGSGLDLCKELRAAGSMPVLILS AHGEEIDRVLGLELGADDYLSKPFSPRELLARVRSLLRRARMPPAAPVPANGPFEIDAAGQRMRLHGRPLNLTRREFGLL ADLLHHRGRIRSRDELLGAVWGADSDSTDRTVDTHIKTLRAKLQEAAPERDYIVTHRGMGYCLEI
Specific function: Member of the two-component regulatory system CreC/CreB involved in catabolic regulation [H]
COG id: COG0745
COG function: function code TK; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
Gene ontology:
Cell location: Cytoplasmic [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 response regulatory domain [H]
Homologues:
Organism=Escherichia coli, GI1790860, Length=230, Percent_Identity=49.1304347826087, Blast_Score=201, Evalue=4e-53, Organism=Escherichia coli, GI1786599, Length=221, Percent_Identity=39.3665158371041, Blast_Score=152, Evalue=2e-38, Organism=Escherichia coli, GI1788394, Length=225, Percent_Identity=40, Blast_Score=149, Evalue=1e-37, Organism=Escherichia coli, GI1786911, Length=218, Percent_Identity=37.6146788990826, Blast_Score=139, Evalue=2e-34, Organism=Escherichia coli, GI1789809, Length=227, Percent_Identity=35.6828193832599, Blast_Score=134, Evalue=4e-33, Organism=Escherichia coli, GI2367329, Length=229, Percent_Identity=38.8646288209607, Blast_Score=126, Evalue=1e-30, Organism=Escherichia coli, GI1786784, Length=237, Percent_Identity=37.1308016877637, Blast_Score=126, Evalue=1e-30, Organism=Escherichia coli, GI87082012, Length=228, Percent_Identity=36.8421052631579, Blast_Score=117, Evalue=7e-28, Organism=Escherichia coli, GI1787375, Length=223, Percent_Identity=31.390134529148, Blast_Score=114, Evalue=5e-27, Organism=Escherichia coli, GI1789402, Length=221, Percent_Identity=36.6515837104072, Blast_Score=114, Evalue=8e-27, Organism=Escherichia coli, GI1790863, Length=230, Percent_Identity=30.8695652173913, Blast_Score=112, Evalue=2e-26, Organism=Escherichia coli, GI1790552, Length=221, Percent_Identity=33.0316742081448, Blast_Score=112, Evalue=3e-26, Organism=Escherichia coli, GI1787229, Length=226, Percent_Identity=31.858407079646, Blast_Score=110, Evalue=6e-26, Organism=Escherichia coli, GI145693140, Length=231, Percent_Identity=30.7359307359307, Blast_Score=102, Evalue=3e-23,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011006 - InterPro: IPR001867 - InterPro: IPR001789 - InterPro: IPR011991 [H]
Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]
EC number: NA
Molecular weight: Translated: 24955; Mature: 24824
Theoretical pI: Translated: 7.22; Mature: 7.22
Prosite motif: PS50110 RESPONSE_REGULATORY
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTGARVLLVEDDPAIARSIVFALERDGINLTHSLLLSDARRQLLVRTPDVVILDIGLPDG CCCCEEEEEECCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHEEECCCEEEEEECCCCC SGLDLCKELRAAGSMPVLILSAHGEEIDRVLGLELGADDYLSKPFSPRELLARVRSLLRR CCHHHHHHHHHCCCCCEEEEECCCHHHHHHHHCCCCCHHHHCCCCCHHHHHHHHHHHHHH ARMPPAAPVPANGPFEIDAAGQRMRLHGRPLNLTRREFGLLADLLHHRGRIRSRDELLGA HCCCCCCCCCCCCCEEECCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHH VWGADSDSTDRTVDTHIKTLRAKLQEAAPERDYIVTHRGMGYCLEI HCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEEEC >Mature Secondary Structure TGARVLLVEDDPAIARSIVFALERDGINLTHSLLLSDARRQLLVRTPDVVILDIGLPDG CCCEEEEEECCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHEEECCCEEEEEECCCCC SGLDLCKELRAAGSMPVLILSAHGEEIDRVLGLELGADDYLSKPFSPRELLARVRSLLRR CCHHHHHHHHHCCCCCEEEEECCCHHHHHHHHCCCCCHHHHCCCCCHHHHHHHHHHHHHH ARMPPAAPVPANGPFEIDAAGQRMRLHGRPLNLTRREFGLLADLLHHRGRIRSRDELLGA HCCCCCCCCCCCCCEEECCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHH VWGADSDSTDRTVDTHIKTLRAKLQEAAPERDYIVTHRGMGYCLEI HCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 3531171; 7610040; 9278503 [H]