| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91786006
Identifier: 91786006
GI number: 91786006
Start: 97094
End: 98335
Strand: Direct
Name: 91786006
Synonym: Bpro_0093
Alternate gene names: NA
Gene position: 97094-98335 (Clockwise)
Preceding gene: 91786005
Following gene: 91786007
Centisome position: 1.87
GC content: 69.89
Gene sequence:
>1242_bases ATGAGCGAACGTATTCACGCGACCTACTGGCTGGAAACCGGCGATGACCCGCGGCGCGCCGCCGAGGTGATTGCCGGCGA GCAGTCCAGCGGCACCTTCATCACGCTGCCCAACGAGACACCGGCGCTGAAGGCGCGCTCCGGAGCGCGCATCGAACGGC TGGAGGTGCTGGAGCAGGTCGGCCAGCCCAGCCTGCCGGTCGCCACGCCGGCCAAGGTCTACACCCGCTGCACGCTGGAG CTGTCGTGGCCGATCGAGAACCTCGGCCCCTCGTTGCCCAACCTGATGTCGACCATCGCCGGCAACCTGTTCGAGCTGCG CCAGGTGTCGGGCCTGCGTGTGCTGGACCTGAAACTGCCAGCGTCGTTCGCCGCTGCCTACCCCGGCCCGGCCTTCGGCA TAGCCGGCACGCGGCGCCTGTCCGGCGTGGCGCAGGGCCCGCTGATCGGCACCATCATCAAGCCCAGCGTCGGGCTGGAC CCGGCGCAGACGGCCGAGCAGGTGCGCCAGCTGATTGACGGCGGCATCGACTTCATCAAGGACGATGAGCTGCAGGCCGA CGGGCCGCATTGCCCGTTCGACGAGCGTGTGCGCGCCGTGATGCAGGTGGTCAACGACGCGGCCCAGCGCGACGGGCGCA AGGTCATGGTGGCCTTCAACCTGACCGGCGACCTGGACCAGATGCGGCGGCGCCACGACCTCGTGCAGTCGCTGGGCGGC ACCTGCGTGATGGCCAGCCTCAATTCCATAGGCCTGGTCGGCCTGCTCGAGCTGCGCCGCCATGCCAGCCTGCCCATCCA TGCCCACCGCTGCGGCTGGGGTTATCTCTCGCGCAGCCCGGCGCTGGGCTGGGACTTTGCGCCATGGCACCAGATCTGGC GCCTGGCGGGTGCCGACCACCTGCATGTCAATGGCCTGGCCAACAAGTTCAGCGAATCCGACGCGAGCGTGATCGCCGCC GCGCGCGCGGTGCTGAGGCCGCTGTTCGCCCACCAGCCGATGCCGGCCATGCCGGTCTTCAGTTCGGGCCAGACCGGCCT GCAGGCGCCCGGCACCTATGCGGCGCTCGGCAGCGCGGACCTGATCCATGCCGCTGGCGGCGGCATCTTTGGCCACCCGG GTGGCATTGCCTCCGGGGTCAGCGCCTTCCGCCAGGCCTGGGAGGCGGCGATGGCTGGCACGCCGCTGCACGAGCATGCC AAAACGCATGCCGAGCTGCGCAGCGCGCTTGAGTTCTGGTGA
Upstream 100 bases:
>100_bases TACCGCATCGGCGTGATTTCCGGCGACGGCATAGGCCGCGCCACGACCCGCGAGCTTGGTGACGCCATCGTGCGGGCGCT GGCGAACTGAAGGAACATCC
Downstream 100 bases:
>100_bases GCGCCGTGGCCGACAACCGCTGGCCGGACGGCCTGCTGCTCGCCTACTACGGCGACGACTTCACCGGCTCCACCGACGTG ATGGAGGCCTTCAGCGCGGC
Product: RuBisCo-like protein
Products: 3-phospho-D-glycerate; H+
Alternate protein names: RuBisCO-like protein [H]
Number of amino acids: Translated: 413; Mature: 412
Protein sequence:
>413_residues MSERIHATYWLETGDDPRRAAEVIAGEQSSGTFITLPNETPALKARSGARIERLEVLEQVGQPSLPVATPAKVYTRCTLE LSWPIENLGPSLPNLMSTIAGNLFELRQVSGLRVLDLKLPASFAAAYPGPAFGIAGTRRLSGVAQGPLIGTIIKPSVGLD PAQTAEQVRQLIDGGIDFIKDDELQADGPHCPFDERVRAVMQVVNDAAQRDGRKVMVAFNLTGDLDQMRRRHDLVQSLGG TCVMASLNSIGLVGLLELRRHASLPIHAHRCGWGYLSRSPALGWDFAPWHQIWRLAGADHLHVNGLANKFSESDASVIAA ARAVLRPLFAHQPMPAMPVFSSGQTGLQAPGTYAALGSADLIHAAGGGIFGHPGGIASGVSAFRQAWEAAMAGTPLHEHA KTHAELRSALEFW
Sequences:
>Translated_413_residues MSERIHATYWLETGDDPRRAAEVIAGEQSSGTFITLPNETPALKARSGARIERLEVLEQVGQPSLPVATPAKVYTRCTLE LSWPIENLGPSLPNLMSTIAGNLFELRQVSGLRVLDLKLPASFAAAYPGPAFGIAGTRRLSGVAQGPLIGTIIKPSVGLD PAQTAEQVRQLIDGGIDFIKDDELQADGPHCPFDERVRAVMQVVNDAAQRDGRKVMVAFNLTGDLDQMRRRHDLVQSLGG TCVMASLNSIGLVGLLELRRHASLPIHAHRCGWGYLSRSPALGWDFAPWHQIWRLAGADHLHVNGLANKFSESDASVIAA ARAVLRPLFAHQPMPAMPVFSSGQTGLQAPGTYAALGSADLIHAAGGGIFGHPGGIASGVSAFRQAWEAAMAGTPLHEHA KTHAELRSALEFW >Mature_412_residues SERIHATYWLETGDDPRRAAEVIAGEQSSGTFITLPNETPALKARSGARIERLEVLEQVGQPSLPVATPAKVYTRCTLEL SWPIENLGPSLPNLMSTIAGNLFELRQVSGLRVLDLKLPASFAAAYPGPAFGIAGTRRLSGVAQGPLIGTIIKPSVGLDP AQTAEQVRQLIDGGIDFIKDDELQADGPHCPFDERVRAVMQVVNDAAQRDGRKVMVAFNLTGDLDQMRRRHDLVQSLGGT CVMASLNSIGLVGLLELRRHASLPIHAHRCGWGYLSRSPALGWDFAPWHQIWRLAGADHLHVNGLANKFSESDASVIAAA RAVLRPLFAHQPMPAMPVFSSGQTGLQAPGTYAALGSADLIHAAGGGIFGHPGGIASGVSAFRQAWEAAMAGTPLHEHAK THAELRSALEFW
Specific function: May be involved in sulfur metabolism and oxidative stress response. Does not show RuBisCO activity [H]
COG id: COG1850
COG function: function code G; Ribulose 1,5-bisphosphate carboxylase, large subunit
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the RuBisCO large chain family. Type IV subfamily [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020878 - InterPro: IPR000685 - InterPro: IPR017443 [H]
Pfam domain/function: PF00016 RuBisCO_large [H]
EC number: 4.1.1.39
Molecular weight: Translated: 44241; Mature: 44110
Theoretical pI: Translated: 7.08; Mature: 7.08
Prosite motif: PS00157 RUBISCO_LARGE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSERIHATYWLETGDDPRRAAEVIAGEQSSGTFITLPNETPALKARSGARIERLEVLEQV CCCCEEEEEEEECCCCHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHC GQPSLPVATPAKVYTRCTLELSWPIENLGPSLPNLMSTIAGNLFELRQVSGLRVLDLKLP CCCCCCCCCCHHEEEEEEEEEECCHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECC ASFAAAYPGPAFGIAGTRRLSGVAQGPLIGTIIKPSVGLDPAQTAEQVRQLIDGGIDFIK HHHHHCCCCCCCCCCCHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEE DDELQADGPHCPFDERVRAVMQVVNDAAQRDGRKVMVAFNLTGDLDQMRRRHDLVQSLGG CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHCCC TCVMASLNSIGLVGLLELRRHASLPIHAHRCGWGYLSRSPALGWDFAPWHQIWRLAGADH EEEEHHHCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCE LHVNGLANKFSESDASVIAAARAVLRPLFAHQPMPAMPVFSSGQTGLQAPGTYAALGSAD EEECHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCC LIHAAGGGIFGHPGGIASGVSAFRQAWEAAMAGTPLHEHAKTHAELRSALEFW EEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC >Mature Secondary Structure SERIHATYWLETGDDPRRAAEVIAGEQSSGTFITLPNETPALKARSGARIERLEVLEQV CCCEEEEEEEECCCCHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHC GQPSLPVATPAKVYTRCTLELSWPIENLGPSLPNLMSTIAGNLFELRQVSGLRVLDLKLP CCCCCCCCCCHHEEEEEEEEEECCHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECC ASFAAAYPGPAFGIAGTRRLSGVAQGPLIGTIIKPSVGLDPAQTAEQVRQLIDGGIDFIK HHHHHCCCCCCCCCCCHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEE DDELQADGPHCPFDERVRAVMQVVNDAAQRDGRKVMVAFNLTGDLDQMRRRHDLVQSLGG CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHCCC TCVMASLNSIGLVGLLELRRHASLPIHAHRCGWGYLSRSPALGWDFAPWHQIWRLAGADH EEEEHHHCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCE LHVNGLANKFSESDASVIAAARAVLRPLFAHQPMPAMPVFSSGQTGLQAPGTYAALGSAD EEECHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCC LIHAAGGGIFGHPGGIASGVSAFRQAWEAAMAGTPLHEHAKTHAELRSALEFW EEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: D-ribulose 1,5-bisphosphate; CO2; H2O
Specific reaction: D-ribulose 1,5-bisphosphate + CO2 + H2O = 2 3-phospho-D-glycerate + 2 H+
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12910271 [H]