| Definition | Burkholderia xenovorans LB400 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_007951 |
| Length | 4,895,836 |
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The map label for this gene is ynfM [C]
Identifier: 91782221
GI number: 91782221
Start: 940548
End: 941753
Strand: Direct
Name: ynfM [C]
Synonym: Bxe_A3614
Alternate gene names: 91782221
Gene position: 940548-941753 (Clockwise)
Preceding gene: 91782220
Following gene: 91782223
Centisome position: 19.21
GC content: 61.69
Gene sequence:
>1206_bases ATGGGTAGCACGCCAATATCGACGGCCGAACACAGACTTAACGAACGGTTGCTCGCGGCCGCCGCATTTTTCAGCGGGGC GGCGCTACGTGTGTGCGATTCGATGCTGCCGCAGTTCGAGCAGCAGTTTCAACTGGATCTGAACGGTAGCGCGAGGGTGA TCGTCGCGTTCTCGATTGCCTATAGCCTGACGCAACTCTTCTCGGGCCCACTAGGTGATCGCTTCGGTAAGCCGGCCATG GTGTTCGCCGCGTTGGCCGGTTCTGCACTGGCTGCGCTCGCGTCCGCCATGGCGCCGGCTTTTCTCGCGCTCGTCTGTGC GCGAGCGATGTGGGGCATTGCTGCAGCCGGCATCATTCCGCTTTCCATGGCATGGATTGGCGACTGCGTTCCGTACGACC GACGTCAGCGTGCGCTTGCGCGCCTGCTATTTGGAACGCTATCAGGCATGATGGCCGGTCAGTTGCTCGGCGGATGCATG ATCGATACGCCGTTGAGTTGGCGAGGAGCTTTCGTCCTGCTCGCAGCGGGCTATTTGCTGCTTGCGCTGCAACTGCGCGC CGAACTTCGGCGCGATGCGGGCGTCGCGCTGCACCAGAGTGTGAGAGGCCGATCTGGCAGGTTCGCGAATCACGCCTGTG TCGTGCTATCGGCCCGTTGGGCGCGCGTCGTTCTTCTAACCACTGCATTCGAGGGTGTCTTTCTTCTCGGGCCACTCGCA TTTATTCCTGCGTCATTGCACGCCCGCTTCGATATGTCTTCCGGCCTGGCCGCGGCCTATGCCGCGCTGTATGCGGGCGG AGGGCTCATCTATGCGCTCTGCGCGCGTTATCTGATCGACCGGCTCGGAGAGCGAGGTATCGTGCTGTGCGGAGGCTTGC TGATCGCCGCAGGTCTCGCGAGCGTCGGGCATTTGCCGTTGCCCGCGTTCGCCGGTTCAGCCACGTTGCTCGTGGGTTGC GGTTCGTATCTGTTGCACAACACGCTGCAAACGCATGCTACCCAGATGGCGCCGTCTGCACGCGGAACGGCGGTGTCGTT CTTCTCGTTCAGTCTGTTTTTGGGGCAAGCGCTCGGCGTCGCGATAGGCGGATACACCGTCGAACTCTTGGGCTATCCAC GCTTCTTTGAGATCTGTTCGTTTGTGATGCTGGTGTGTGCTGTCGTCTTCGCGTTGCTGCTTGCAAGACGCGCGCGCAGG CGGTAG
Upstream 100 bases:
>100_bases GGGGGCTTCATGCAAACGACGCTGATGCACGCACAACCCAAGGCAGAGCAATATGGAGGCTGGCAGCCGGCGCATATTGA CTTCTCCGCCGCAGTCCCGC
Downstream 100 bases:
>100_bases CGCGCTCAGCCGGCTACCGCGCGCTTGCGAACCGCTTTCTTAACCGGGCTCCGGTCCGTCTTCGCGACTGTTTTTGCCGG AGACTTTGCGGTTGACTTCG
Product: major facilitator transporter
Products: NA
Alternate protein names: Facilitator Superfamily Protein; MFS Family Transporter; Facilitator Superfamily Transporter
Number of amino acids: Translated: 401; Mature: 400
Protein sequence:
>401_residues MGSTPISTAEHRLNERLLAAAAFFSGAALRVCDSMLPQFEQQFQLDLNGSARVIVAFSIAYSLTQLFSGPLGDRFGKPAM VFAALAGSALAALASAMAPAFLALVCARAMWGIAAAGIIPLSMAWIGDCVPYDRRQRALARLLFGTLSGMMAGQLLGGCM IDTPLSWRGAFVLLAAGYLLLALQLRAELRRDAGVALHQSVRGRSGRFANHACVVLSARWARVVLLTTAFEGVFLLGPLA FIPASLHARFDMSSGLAAAYAALYAGGGLIYALCARYLIDRLGERGIVLCGGLLIAAGLASVGHLPLPAFAGSATLLVGC GSYLLHNTLQTHATQMAPSARGTAVSFFSFSLFLGQALGVAIGGYTVELLGYPRFFEICSFVMLVCAVVFALLLARRARR R
Sequences:
>Translated_401_residues MGSTPISTAEHRLNERLLAAAAFFSGAALRVCDSMLPQFEQQFQLDLNGSARVIVAFSIAYSLTQLFSGPLGDRFGKPAM VFAALAGSALAALASAMAPAFLALVCARAMWGIAAAGIIPLSMAWIGDCVPYDRRQRALARLLFGTLSGMMAGQLLGGCM IDTPLSWRGAFVLLAAGYLLLALQLRAELRRDAGVALHQSVRGRSGRFANHACVVLSARWARVVLLTTAFEGVFLLGPLA FIPASLHARFDMSSGLAAAYAALYAGGGLIYALCARYLIDRLGERGIVLCGGLLIAAGLASVGHLPLPAFAGSATLLVGC GSYLLHNTLQTHATQMAPSARGTAVSFFSFSLFLGQALGVAIGGYTVELLGYPRFFEICSFVMLVCAVVFALLLARRARR R >Mature_400_residues GSTPISTAEHRLNERLLAAAAFFSGAALRVCDSMLPQFEQQFQLDLNGSARVIVAFSIAYSLTQLFSGPLGDRFGKPAMV FAALAGSALAALASAMAPAFLALVCARAMWGIAAAGIIPLSMAWIGDCVPYDRRQRALARLLFGTLSGMMAGQLLGGCMI DTPLSWRGAFVLLAAGYLLLALQLRAELRRDAGVALHQSVRGRSGRFANHACVVLSARWARVVLLTTAFEGVFLLGPLAF IPASLHARFDMSSGLAAAYAALYAGGGLIYALCARYLIDRLGERGIVLCGGLLIAAGLASVGHLPLPAFAGSATLLVGCG SYLLHNTLQTHATQMAPSARGTAVSFFSFSLFLGQALGVAIGGYTVELLGYPRFFEICSFVMLVCAVVFALLLARRARRR
Specific function: Unknown
COG id: COG0477
COG function: function code GEPR; Permeases of the major facilitator superfamily
Gene ontology:
Cell location: Integral Membrane Protein. Inner Membrane [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42288; Mature: 42157
Theoretical pI: Translated: 9.81; Mature: 9.81
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 5.5 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 5.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGSTPISTAEHRLNERLLAAAAFFSGAALRVCDSMLPQFEQQFQLDLNGSARVIVAFSIA CCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHEECCCCCCEEEEHHHHH YSLTQLFSGPLGDRFGKPAMVFAALAGSALAALASAMAPAFLALVCARAMWGIAAAGIIP HHHHHHHCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LSMAWIGDCVPYDRRQRALARLLFGTLSGMMAGQLLGGCMIDTPLSWRGAFVLLAAGYLL HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH LALQLRAELRRDAGVALHQSVRGRSGRFANHACVVLSARWARVVLLTTAFEGVFLLGPLA HHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCEEEEEEHHHHHHHHHHHHHCHHHHHHHHH FIPASLHARFDMSSGLAAAYAALYAGGGLIYALCARYLIDRLGERGIVLCGGLLIAAGLA HHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHH SVGHLPLPAFAGSATLLVGCGSYLLHNTLQTHATQMAPSARGTAVSFFSFSLFLGQALGV HCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH AIGGYTVELLGYPRFFEICSFVMLVCAVVFALLLARRARRR HHCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure GSTPISTAEHRLNERLLAAAAFFSGAALRVCDSMLPQFEQQFQLDLNGSARVIVAFSIA CCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHEECCCCCCEEEEHHHHH YSLTQLFSGPLGDRFGKPAMVFAALAGSALAALASAMAPAFLALVCARAMWGIAAAGIIP HHHHHHHCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LSMAWIGDCVPYDRRQRALARLLFGTLSGMMAGQLLGGCMIDTPLSWRGAFVLLAAGYLL HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH LALQLRAELRRDAGVALHQSVRGRSGRFANHACVVLSARWARVVLLTTAFEGVFLLGPLA HHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCEEEEEEHHHHHHHHHHHHHCHHHHHHHHH FIPASLHARFDMSSGLAAAYAALYAGGGLIYALCARYLIDRLGERGIVLCGGLLIAAGLA HHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHH SVGHLPLPAFAGSATLLVGCGSYLLHNTLQTHATQMAPSARGTAVSFFSFSLFLGQALGV HCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH AIGGYTVELLGYPRFFEICSFVMLVCAVVFALLLARRARRR HHCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA