Definition Burkholderia xenovorans LB400 chromosome 1, complete sequence.
Accession NC_007951
Length 4,895,836

Click here to switch to the map view.

The map label for this gene is ynfM [C]

Identifier: 91782221

GI number: 91782221

Start: 940548

End: 941753

Strand: Direct

Name: ynfM [C]

Synonym: Bxe_A3614

Alternate gene names: 91782221

Gene position: 940548-941753 (Clockwise)

Preceding gene: 91782220

Following gene: 91782223

Centisome position: 19.21

GC content: 61.69

Gene sequence:

>1206_bases
ATGGGTAGCACGCCAATATCGACGGCCGAACACAGACTTAACGAACGGTTGCTCGCGGCCGCCGCATTTTTCAGCGGGGC
GGCGCTACGTGTGTGCGATTCGATGCTGCCGCAGTTCGAGCAGCAGTTTCAACTGGATCTGAACGGTAGCGCGAGGGTGA
TCGTCGCGTTCTCGATTGCCTATAGCCTGACGCAACTCTTCTCGGGCCCACTAGGTGATCGCTTCGGTAAGCCGGCCATG
GTGTTCGCCGCGTTGGCCGGTTCTGCACTGGCTGCGCTCGCGTCCGCCATGGCGCCGGCTTTTCTCGCGCTCGTCTGTGC
GCGAGCGATGTGGGGCATTGCTGCAGCCGGCATCATTCCGCTTTCCATGGCATGGATTGGCGACTGCGTTCCGTACGACC
GACGTCAGCGTGCGCTTGCGCGCCTGCTATTTGGAACGCTATCAGGCATGATGGCCGGTCAGTTGCTCGGCGGATGCATG
ATCGATACGCCGTTGAGTTGGCGAGGAGCTTTCGTCCTGCTCGCAGCGGGCTATTTGCTGCTTGCGCTGCAACTGCGCGC
CGAACTTCGGCGCGATGCGGGCGTCGCGCTGCACCAGAGTGTGAGAGGCCGATCTGGCAGGTTCGCGAATCACGCCTGTG
TCGTGCTATCGGCCCGTTGGGCGCGCGTCGTTCTTCTAACCACTGCATTCGAGGGTGTCTTTCTTCTCGGGCCACTCGCA
TTTATTCCTGCGTCATTGCACGCCCGCTTCGATATGTCTTCCGGCCTGGCCGCGGCCTATGCCGCGCTGTATGCGGGCGG
AGGGCTCATCTATGCGCTCTGCGCGCGTTATCTGATCGACCGGCTCGGAGAGCGAGGTATCGTGCTGTGCGGAGGCTTGC
TGATCGCCGCAGGTCTCGCGAGCGTCGGGCATTTGCCGTTGCCCGCGTTCGCCGGTTCAGCCACGTTGCTCGTGGGTTGC
GGTTCGTATCTGTTGCACAACACGCTGCAAACGCATGCTACCCAGATGGCGCCGTCTGCACGCGGAACGGCGGTGTCGTT
CTTCTCGTTCAGTCTGTTTTTGGGGCAAGCGCTCGGCGTCGCGATAGGCGGATACACCGTCGAACTCTTGGGCTATCCAC
GCTTCTTTGAGATCTGTTCGTTTGTGATGCTGGTGTGTGCTGTCGTCTTCGCGTTGCTGCTTGCAAGACGCGCGCGCAGG
CGGTAG

Upstream 100 bases:

>100_bases
GGGGGCTTCATGCAAACGACGCTGATGCACGCACAACCCAAGGCAGAGCAATATGGAGGCTGGCAGCCGGCGCATATTGA
CTTCTCCGCCGCAGTCCCGC

Downstream 100 bases:

>100_bases
CGCGCTCAGCCGGCTACCGCGCGCTTGCGAACCGCTTTCTTAACCGGGCTCCGGTCCGTCTTCGCGACTGTTTTTGCCGG
AGACTTTGCGGTTGACTTCG

Product: major facilitator transporter

Products: NA

Alternate protein names: Facilitator Superfamily Protein; MFS Family Transporter; Facilitator Superfamily Transporter

Number of amino acids: Translated: 401; Mature: 400

Protein sequence:

>401_residues
MGSTPISTAEHRLNERLLAAAAFFSGAALRVCDSMLPQFEQQFQLDLNGSARVIVAFSIAYSLTQLFSGPLGDRFGKPAM
VFAALAGSALAALASAMAPAFLALVCARAMWGIAAAGIIPLSMAWIGDCVPYDRRQRALARLLFGTLSGMMAGQLLGGCM
IDTPLSWRGAFVLLAAGYLLLALQLRAELRRDAGVALHQSVRGRSGRFANHACVVLSARWARVVLLTTAFEGVFLLGPLA
FIPASLHARFDMSSGLAAAYAALYAGGGLIYALCARYLIDRLGERGIVLCGGLLIAAGLASVGHLPLPAFAGSATLLVGC
GSYLLHNTLQTHATQMAPSARGTAVSFFSFSLFLGQALGVAIGGYTVELLGYPRFFEICSFVMLVCAVVFALLLARRARR
R

Sequences:

>Translated_401_residues
MGSTPISTAEHRLNERLLAAAAFFSGAALRVCDSMLPQFEQQFQLDLNGSARVIVAFSIAYSLTQLFSGPLGDRFGKPAM
VFAALAGSALAALASAMAPAFLALVCARAMWGIAAAGIIPLSMAWIGDCVPYDRRQRALARLLFGTLSGMMAGQLLGGCM
IDTPLSWRGAFVLLAAGYLLLALQLRAELRRDAGVALHQSVRGRSGRFANHACVVLSARWARVVLLTTAFEGVFLLGPLA
FIPASLHARFDMSSGLAAAYAALYAGGGLIYALCARYLIDRLGERGIVLCGGLLIAAGLASVGHLPLPAFAGSATLLVGC
GSYLLHNTLQTHATQMAPSARGTAVSFFSFSLFLGQALGVAIGGYTVELLGYPRFFEICSFVMLVCAVVFALLLARRARR
R
>Mature_400_residues
GSTPISTAEHRLNERLLAAAAFFSGAALRVCDSMLPQFEQQFQLDLNGSARVIVAFSIAYSLTQLFSGPLGDRFGKPAMV
FAALAGSALAALASAMAPAFLALVCARAMWGIAAAGIIPLSMAWIGDCVPYDRRQRALARLLFGTLSGMMAGQLLGGCMI
DTPLSWRGAFVLLAAGYLLLALQLRAELRRDAGVALHQSVRGRSGRFANHACVVLSARWARVVLLTTAFEGVFLLGPLAF
IPASLHARFDMSSGLAAAYAALYAGGGLIYALCARYLIDRLGERGIVLCGGLLIAAGLASVGHLPLPAFAGSATLLVGCG
SYLLHNTLQTHATQMAPSARGTAVSFFSFSLFLGQALGVAIGGYTVELLGYPRFFEICSFVMLVCAVVFALLLARRARRR

Specific function: Unknown

COG id: COG0477

COG function: function code GEPR; Permeases of the major facilitator superfamily

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 42288; Mature: 42157

Theoretical pI: Translated: 9.81; Mature: 9.81

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGSTPISTAEHRLNERLLAAAAFFSGAALRVCDSMLPQFEQQFQLDLNGSARVIVAFSIA
CCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHEECCCCCCEEEEHHHHH
YSLTQLFSGPLGDRFGKPAMVFAALAGSALAALASAMAPAFLALVCARAMWGIAAAGIIP
HHHHHHHCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSMAWIGDCVPYDRRQRALARLLFGTLSGMMAGQLLGGCMIDTPLSWRGAFVLLAAGYLL
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
LALQLRAELRRDAGVALHQSVRGRSGRFANHACVVLSARWARVVLLTTAFEGVFLLGPLA
HHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCEEEEEEHHHHHHHHHHHHHCHHHHHHHHH
FIPASLHARFDMSSGLAAAYAALYAGGGLIYALCARYLIDRLGERGIVLCGGLLIAAGLA
HHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHH
SVGHLPLPAFAGSATLLVGCGSYLLHNTLQTHATQMAPSARGTAVSFFSFSLFLGQALGV
HCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
AIGGYTVELLGYPRFFEICSFVMLVCAVVFALLLARRARRR
HHCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
GSTPISTAEHRLNERLLAAAAFFSGAALRVCDSMLPQFEQQFQLDLNGSARVIVAFSIA
CCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHEECCCCCCEEEEHHHHH
YSLTQLFSGPLGDRFGKPAMVFAALAGSALAALASAMAPAFLALVCARAMWGIAAAGIIP
HHHHHHHCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSMAWIGDCVPYDRRQRALARLLFGTLSGMMAGQLLGGCMIDTPLSWRGAFVLLAAGYLL
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
LALQLRAELRRDAGVALHQSVRGRSGRFANHACVVLSARWARVVLLTTAFEGVFLLGPLA
HHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCEEEEEEHHHHHHHHHHHHHCHHHHHHHHH
FIPASLHARFDMSSGLAAAYAALYAGGGLIYALCARYLIDRLGERGIVLCGGLLIAAGLA
HHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHH
SVGHLPLPAFAGSATLLVGCGSYLLHNTLQTHATQMAPSARGTAVSFFSFSLFLGQALGV
HCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
AIGGYTVELLGYPRFFEICSFVMLVCAVVFALLLARRARRR
HHCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA