| Definition | Burkholderia xenovorans LB400 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_007951 |
| Length | 4,895,836 |
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The map label for this gene is xecD [H]
Identifier: 91782220
GI number: 91782220
Start: 939680
End: 940555
Strand: Direct
Name: xecD [H]
Synonym: Bxe_A3615
Alternate gene names: 91782220
Gene position: 939680-940555 (Clockwise)
Preceding gene: 91782219
Following gene: 91782221
Centisome position: 19.19
GC content: 60.96
Gene sequence:
>876_bases ATGAACACGAGTAACGGCAATTCACGCGACACGCAAACTGATTCGCTGCAGGGTAAAGTCGTGGTGCTGACAGGCGCAGG CGGTGGCATAGCGTCGGCCATCGTCGATCGCTTCGCCCGATCGGGATCCCGCATTGTACTGCTCGAACTGCGTACGTCGT CGCTGGCGGACGCGGAGCAACGACTCGCTGCGGCGGGCATCGAATCGGTTTCGATTGAATGCGATGTGGCCGATGAGTCA TCGGTGAAAAACGCAGCCGGGCGTACGGTCGAACATTTTGGCCGCTGCGACGTGCTCATCAATAATGCGGCAACGCTTGC ACCGGCGACGTCGATCGAGAAGTTGCTGGTGGCCGACTGGGACCGTACGCTCGCTATCAATCTGCGCGGCGTATTCCTCA CCACTAAATATTTGGGCGCTCTGATGTTGAATCAGGGTTCGGGCAGCATCGTGAATATCGCTTCGATCGCGGCCACCGCG CCCAACGCCTCGCCGCAATATGGTGCAAGCAAAGCGGCGGTTCTCGCTTTTACGCGGCACACTGCGGTGGAATGGGGGCC GCGAGGCATCCGCGCGAACGCGGTCAGTCCCGGGTTCATTCGAACGCCACTGTCGGAGAGCAACTACGCGGAGCCGGAAA TGCTGGCGCGTCGCTCGAACATGGTGCCGTCCCGGCGGCTCGGTCTTCCCGGCGACATTGCAGAAGCAGTCGCGTTTCTT GCCGGCGACGGTGCGTCGTTCATCAACGGACAGGAACTCGCAGTCGATGGGGGCTTCATGCAAACGACGCTGATGCACGC ACAACCCAAGGCAGAGCAATATGGAGGCTGGCAGCCGGCGCATATTGACTTCTCCGCCGCAGTCCCGCATGGGTAG
Upstream 100 bases:
>100_bases TCGCGCGCTTCCGGCAATTGCAGCAACAACAGATCATTCCTCGTTGAAACCTTACCGGTGCGGCGAACGAAGTCGTCGCG GCTGAAGATCGGAATAATTC
Downstream 100 bases:
>100_bases CACGCCAATATCGACGGCCGAACACAGACTTAACGAACGGTTGCTCGCGGCCGCCGCATTTTTCAGCGGGGCGGCGCTAC GTGTGTGCGATTCGATGCTG
Product: putative dehydrogenase
Products: NA
Alternate protein names: R-HPCDH; Aliphatic epoxide carboxylation component III [H]
Number of amino acids: Translated: 291; Mature: 291
Protein sequence:
>291_residues MNTSNGNSRDTQTDSLQGKVVVLTGAGGGIASAIVDRFARSGSRIVLLELRTSSLADAEQRLAAAGIESVSIECDVADES SVKNAAGRTVEHFGRCDVLINNAATLAPATSIEKLLVADWDRTLAINLRGVFLTTKYLGALMLNQGSGSIVNIASIAATA PNASPQYGASKAAVLAFTRHTAVEWGPRGIRANAVSPGFIRTPLSESNYAEPEMLARRSNMVPSRRLGLPGDIAEAVAFL AGDGASFINGQELAVDGGFMQTTLMHAQPKAEQYGGWQPAHIDFSAAVPHG
Sequences:
>Translated_291_residues MNTSNGNSRDTQTDSLQGKVVVLTGAGGGIASAIVDRFARSGSRIVLLELRTSSLADAEQRLAAAGIESVSIECDVADES SVKNAAGRTVEHFGRCDVLINNAATLAPATSIEKLLVADWDRTLAINLRGVFLTTKYLGALMLNQGSGSIVNIASIAATA PNASPQYGASKAAVLAFTRHTAVEWGPRGIRANAVSPGFIRTPLSESNYAEPEMLARRSNMVPSRRLGLPGDIAEAVAFL AGDGASFINGQELAVDGGFMQTTLMHAQPKAEQYGGWQPAHIDFSAAVPHG >Mature_291_residues MNTSNGNSRDTQTDSLQGKVVVLTGAGGGIASAIVDRFARSGSRIVLLELRTSSLADAEQRLAAAGIESVSIECDVADES SVKNAAGRTVEHFGRCDVLINNAATLAPATSIEKLLVADWDRTLAINLRGVFLTTKYLGALMLNQGSGSIVNIASIAATA PNASPQYGASKAAVLAFTRHTAVEWGPRGIRANAVSPGFIRTPLSESNYAEPEMLARRSNMVPSRRLGLPGDIAEAVAFL AGDGASFINGQELAVDGGFMQTTLMHAQPKAEQYGGWQPAHIDFSAAVPHG
Specific function: Catalyzes the oxidation of 2-(R)-hydroxyalkyl thioesters of CoM to 2-oxoalkyl thioesters of CoM. The enzyme highly specific for the R enantiomers [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI19923817, Length=268, Percent_Identity=30.9701492537313, Blast_Score=131, Evalue=8e-31, Organism=Homo sapiens, GI32483357, Length=250, Percent_Identity=34, Blast_Score=130, Evalue=1e-30, Organism=Homo sapiens, GI15277342, Length=257, Percent_Identity=31.1284046692607, Blast_Score=119, Evalue=4e-27, Organism=Homo sapiens, GI59889578, Length=229, Percent_Identity=35.3711790393013, Blast_Score=113, Evalue=3e-25, Organism=Homo sapiens, GI10190704, Length=250, Percent_Identity=33.6, Blast_Score=111, Evalue=8e-25, Organism=Homo sapiens, GI5031737, Length=250, Percent_Identity=30.8, Blast_Score=110, Evalue=2e-24, Organism=Homo sapiens, GI31542939, Length=210, Percent_Identity=33.3333333333333, Blast_Score=105, Evalue=7e-23, Organism=Homo sapiens, GI40254992, Length=242, Percent_Identity=32.2314049586777, Blast_Score=104, Evalue=1e-22, Organism=Homo sapiens, GI126723750, Length=253, Percent_Identity=29.2490118577075, Blast_Score=103, Evalue=2e-22, Organism=Homo sapiens, GI7705925, Length=248, Percent_Identity=30.6451612903226, Blast_Score=100, Evalue=1e-21, Organism=Homo sapiens, GI66933014, Length=250, Percent_Identity=30.8, Blast_Score=100, Evalue=2e-21, Organism=Homo sapiens, GI4503301, Length=260, Percent_Identity=31.9230769230769, Blast_Score=95, Evalue=8e-20, Organism=Homo sapiens, GI33667109, Length=199, Percent_Identity=31.6582914572864, Blast_Score=89, Evalue=4e-18, Organism=Homo sapiens, GI224922801, Length=176, Percent_Identity=32.9545454545455, Blast_Score=86, Evalue=4e-17, Organism=Homo sapiens, GI126723191, Length=191, Percent_Identity=31.9371727748691, Blast_Score=86, Evalue=5e-17, Organism=Homo sapiens, GI4758504, Length=258, Percent_Identity=31.7829457364341, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI209862901, Length=212, Percent_Identity=27.3584905660377, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI19923983, Length=212, Percent_Identity=27.3584905660377, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI210032110, Length=201, Percent_Identity=26.3681592039801, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI83715985, Length=257, Percent_Identity=29.1828793774319, Blast_Score=68, Evalue=1e-11, Organism=Homo sapiens, GI20149619, Length=198, Percent_Identity=30.3030303030303, Blast_Score=68, Evalue=1e-11, Organism=Homo sapiens, GI40807363, Length=196, Percent_Identity=28.5714285714286, Blast_Score=67, Evalue=2e-11, Organism=Escherichia coli, GI87082100, Length=256, Percent_Identity=35.15625, Blast_Score=138, Evalue=5e-34, Organism=Escherichia coli, GI1789208, Length=248, Percent_Identity=30.6451612903226, Blast_Score=125, Evalue=3e-30, Organism=Escherichia coli, GI87082160, Length=261, Percent_Identity=27.5862068965517, Blast_Score=121, Evalue=6e-29, Organism=Escherichia coli, GI1787335, Length=249, Percent_Identity=31.3253012048193, Blast_Score=114, Evalue=6e-27, Organism=Escherichia coli, GI1787905, Length=247, Percent_Identity=31.9838056680162, Blast_Score=112, Evalue=2e-26, Organism=Escherichia coli, GI1790717, Length=249, Percent_Identity=27.3092369477912, Blast_Score=110, Evalue=1e-25, Organism=Escherichia coli, GI1788459, Length=246, Percent_Identity=29.2682926829268, Blast_Score=102, Evalue=3e-23, Organism=Escherichia coli, GI2367175, Length=245, Percent_Identity=29.3877551020408, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI1786812, Length=252, Percent_Identity=30.5555555555556, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI1789378, Length=248, Percent_Identity=27.0161290322581, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI2367365, Length=247, Percent_Identity=31.9838056680162, Blast_Score=85, Evalue=6e-18, Organism=Escherichia coli, GI1789057, Length=254, Percent_Identity=26.7716535433071, Blast_Score=79, Evalue=2e-16, Organism=Escherichia coli, GI1787820, Length=226, Percent_Identity=24.7787610619469, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1787545, Length=259, Percent_Identity=27.027027027027, Blast_Score=69, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17555706, Length=250, Percent_Identity=34.4, Blast_Score=133, Evalue=1e-31, Organism=Caenorhabditis elegans, GI17559104, Length=278, Percent_Identity=34.5323741007194, Blast_Score=128, Evalue=4e-30, Organism=Caenorhabditis elegans, GI25147288, Length=247, Percent_Identity=34.412955465587, Blast_Score=127, Evalue=7e-30, Organism=Caenorhabditis elegans, GI17531453, Length=260, Percent_Identity=32.6923076923077, Blast_Score=115, Evalue=3e-26, Organism=Caenorhabditis elegans, GI17562906, Length=262, Percent_Identity=30.9160305343511, Blast_Score=114, Evalue=8e-26, Organism=Caenorhabditis elegans, GI17560676, Length=257, Percent_Identity=27.2373540856031, Blast_Score=113, Evalue=1e-25, Organism=Caenorhabditis elegans, GI193204405, Length=259, Percent_Identity=32.4324324324324, Blast_Score=112, Evalue=2e-25, Organism=Caenorhabditis elegans, GI17562908, Length=262, Percent_Identity=32.824427480916, Blast_Score=110, Evalue=1e-24, Organism=Caenorhabditis elegans, GI17560332, Length=258, Percent_Identity=32.5581395348837, Blast_Score=110, Evalue=1e-24, Organism=Caenorhabditis elegans, GI17560150, Length=263, Percent_Identity=30.7984790874525, Blast_Score=109, Evalue=1e-24, Organism=Caenorhabditis elegans, GI17561402, Length=252, Percent_Identity=30.1587301587302, Blast_Score=107, Evalue=8e-24, Organism=Caenorhabditis elegans, GI17562990, Length=260, Percent_Identity=31.1538461538462, Blast_Score=107, Evalue=1e-23, Organism=Caenorhabditis elegans, GI17562904, Length=257, Percent_Identity=30.3501945525292, Blast_Score=105, Evalue=2e-23, Organism=Caenorhabditis elegans, GI17560220, Length=270, Percent_Identity=30.7407407407407, Blast_Score=105, Evalue=2e-23, Organism=Caenorhabditis elegans, GI17538480, Length=273, Percent_Identity=30.4029304029304, Blast_Score=103, Evalue=8e-23, Organism=Caenorhabditis elegans, GI115534694, Length=243, Percent_Identity=31.6872427983539, Blast_Score=103, Evalue=1e-22, Organism=Caenorhabditis elegans, GI17565030, Length=275, Percent_Identity=30.5454545454545, Blast_Score=102, Evalue=2e-22, Organism=Caenorhabditis elegans, GI17563726, Length=268, Percent_Identity=30.5970149253731, Blast_Score=100, Evalue=6e-22, Organism=Caenorhabditis elegans, GI71994604, Length=253, Percent_Identity=32.0158102766798, Blast_Score=100, Evalue=2e-21, Organism=Caenorhabditis elegans, GI71994600, Length=251, Percent_Identity=32.2709163346614, Blast_Score=98, Evalue=6e-21, Organism=Caenorhabditis elegans, GI17538486, Length=269, Percent_Identity=28.996282527881, Blast_Score=97, Evalue=7e-21, Organism=Caenorhabditis elegans, GI17536025, Length=261, Percent_Identity=32.5670498084291, Blast_Score=97, Evalue=9e-21, Organism=Caenorhabditis elegans, GI17536651, Length=274, Percent_Identity=30.6569343065693, Blast_Score=97, Evalue=1e-20, Organism=Caenorhabditis elegans, GI17544670, Length=264, Percent_Identity=30.6818181818182, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI72000259, Length=261, Percent_Identity=30.2681992337165, Blast_Score=94, Evalue=6e-20, Organism=Caenorhabditis elegans, GI17551412, Length=258, Percent_Identity=27.906976744186, Blast_Score=93, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17562910, Length=272, Percent_Identity=29.7794117647059, Blast_Score=92, Evalue=3e-19, Organism=Caenorhabditis elegans, GI17538182, Length=257, Percent_Identity=27.6264591439689, Blast_Score=82, Evalue=3e-16, Organism=Caenorhabditis elegans, GI17561272, Length=272, Percent_Identity=31.9852941176471, Blast_Score=81, Evalue=5e-16, Organism=Caenorhabditis elegans, GI17568967, Length=192, Percent_Identity=30.2083333333333, Blast_Score=77, Evalue=9e-15, Organism=Caenorhabditis elegans, GI193203117, Length=194, Percent_Identity=26.8041237113402, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI193203115, Length=193, Percent_Identity=26.9430051813472, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17564282, Length=217, Percent_Identity=27.6497695852535, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17567345, Length=209, Percent_Identity=26.3157894736842, Blast_Score=74, Evalue=8e-14, Organism=Caenorhabditis elegans, GI71982365, Length=241, Percent_Identity=28.2157676348548, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI193207185, Length=146, Percent_Identity=35.6164383561644, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI17508895, Length=203, Percent_Identity=25.1231527093596, Blast_Score=71, Evalue=6e-13, Organism=Caenorhabditis elegans, GI212645366, Length=131, Percent_Identity=35.1145038167939, Blast_Score=65, Evalue=4e-11, Organism=Saccharomyces cerevisiae, GI6324126, Length=250, Percent_Identity=30, Blast_Score=87, Evalue=3e-18, Organism=Saccharomyces cerevisiae, GI6322861, Length=250, Percent_Identity=27.6, Blast_Score=64, Evalue=3e-11, Organism=Drosophila melanogaster, GI23397609, Length=250, Percent_Identity=38.8, Blast_Score=135, Evalue=3e-32, Organism=Drosophila melanogaster, GI24639444, Length=249, Percent_Identity=32.9317269076305, Blast_Score=132, Evalue=3e-31, Organism=Drosophila melanogaster, GI28571526, Length=252, Percent_Identity=35.7142857142857, Blast_Score=128, Evalue=5e-30, Organism=Drosophila melanogaster, GI21357041, Length=251, Percent_Identity=35.4581673306773, Blast_Score=122, Evalue=4e-28, Organism=Drosophila melanogaster, GI21355319, Length=245, Percent_Identity=29.3877551020408, Blast_Score=114, Evalue=1e-25, Organism=Drosophila melanogaster, GI24644337, Length=252, Percent_Identity=35.7142857142857, Blast_Score=113, Evalue=1e-25, Organism=Drosophila melanogaster, GI24644339, Length=256, Percent_Identity=33.59375, Blast_Score=112, Evalue=3e-25, Organism=Drosophila melanogaster, GI24643142, Length=245, Percent_Identity=28.9795918367347, Blast_Score=106, Evalue=2e-23, Organism=Drosophila melanogaster, GI21358495, Length=199, Percent_Identity=31.6582914572864, Blast_Score=86, Evalue=4e-17, Organism=Drosophila melanogaster, GI17737361, Length=259, Percent_Identity=28.957528957529, Blast_Score=84, Evalue=2e-16, Organism=Drosophila melanogaster, GI24641232, Length=236, Percent_Identity=29.6610169491525, Blast_Score=71, Evalue=7e-13, Organism=Drosophila melanogaster, GI24665243, Length=223, Percent_Identity=30.0448430493274, Blast_Score=71, Evalue=9e-13, Organism=Drosophila melanogaster, GI221331218, Length=215, Percent_Identity=29.7674418604651, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI24665247, Length=224, Percent_Identity=29.9107142857143, Blast_Score=68, Evalue=6e-12, Organism=Drosophila melanogaster, GI221331216, Length=216, Percent_Identity=29.6296296296296, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI18859837, Length=207, Percent_Identity=28.9855072463768, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI21357673, Length=239, Percent_Identity=27.6150627615063, Blast_Score=65, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: =1.1.1.268 [H]
Molecular weight: Translated: 30405; Mature: 30405
Theoretical pI: Translated: 6.36; Mature: 6.36
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNTSNGNSRDTQTDSLQGKVVVLTGAGGGIASAIVDRFARSGSRIVLLELRTSSLADAEQ CCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHH RLAAAGIESVSIECDVADESSVKNAAGRTVEHFGRCDVLINNAATLAPATSIEKLLVADW HHHHCCCCEEEEEEECCCCCHHHHHCCCHHHHCCCEEEEECCCCCCCCHHHHHHHHHCCC DRTLAINLRGVFLTTKYLGALMLNQGSGSIVNIASIAATAPNASPQYGASKAAVLAFTRH CCEEEEEEEEEEEEHHHHHEEEEECCCCCEEEEEEHEECCCCCCCCCCCCCEEEEEEEHH TAVEWGPRGIRANAVSPGFIRTPLSESNYAEPEMLARRSNMVPSRRLGLPGDIAEAVAFL HHEEECCCCEEECCCCCCEEECCCCCCCCCCHHHHHHHHCCCCHHHCCCCHHHHHHHHHH AGDGASFINGQELAVDGGFMQTTLMHAQPKAEQYGGWQPAHIDFSAAVPHG HCCCCCCCCCCEEEECCCHHHHHHHHCCCCHHHCCCCCCCEEEEECCCCCC >Mature Secondary Structure MNTSNGNSRDTQTDSLQGKVVVLTGAGGGIASAIVDRFARSGSRIVLLELRTSSLADAEQ CCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHH RLAAAGIESVSIECDVADESSVKNAAGRTVEHFGRCDVLINNAATLAPATSIEKLLVADW HHHHCCCCEEEEEEECCCCCHHHHHCCCHHHHCCCEEEEECCCCCCCCHHHHHHHHHCCC DRTLAINLRGVFLTTKYLGALMLNQGSGSIVNIASIAATAPNASPQYGASKAAVLAFTRH CCEEEEEEEEEEEEHHHHHEEEEECCCCCEEEEEEHEECCCCCCCCCCCCCEEEEEEEHH TAVEWGPRGIRANAVSPGFIRTPLSESNYAEPEMLARRSNMVPSRRLGLPGDIAEAVAFL HHEEECCCCEEECCCCCCEEECCCCCCCCCCHHHHHHHHCCCCHHHCCCCHHHHHHHHHH AGDGASFINGQELAVDGGFMQTTLMHAQPKAEQYGGWQPAHIDFSAAVPHG HCCCCCCCCCCEEEECCCHHHHHHHHCCCCHHHCCCCCCCEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7704278; 9405410; 12524213 [H]