| Definition | Burkholderia xenovorans LB400 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_007951 |
| Length | 4,895,836 |
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The map label for this gene is xdhA [H]
Identifier: 91781959
GI number: 91781959
Start: 645525
End: 647891
Strand: Direct
Name: xdhA [H]
Synonym: Bxe_A3885
Alternate gene names: 91781959
Gene position: 645525-647891 (Clockwise)
Preceding gene: 91781958
Following gene: 91781960
Centisome position: 13.19
GC content: 64.81
Gene sequence:
>2367_bases ATGAATCAGCAAGCCGAACCGTTCCTGAAAAACCTTCAGGATCCCGACGACTTCACCCAGGTCCACATCTCGCGTCCGCA CGAGTCCGCGCATCTGCACGTGAGCGGCCGCGCCACCTACACCGACGATATTCCGACGCTCGCCGGCACGCTGCACGCGG CGCTCGGCCTTTCGTCGAAAGCGCATGCGAAGATCGTCTCGATCTCGCTCGACAAGGTGCGCGCCACGCCGGGCGTGGTC GCGATCTTCACCGCCGACGATATCCCGGGCGTCAACGACGTCGGCCCGATCATCCACGGCGACGATCCGATTCTCGCCGA CGGCCTCGTGCAATACATCGGGCAGCCGATCTTCATCGTGGTCGCGACGTCGCATGAAACCGCGCGTCTGGCTGCGCGCC GCGCGGAAATCGTCTACGAGGAACTGCCCGCGATTCTCACCGCGCAGCAGGCCCGCGCCGCGAACCAGCACGTGCTGCCG CCGATGAAACTCGCGCGCGGAGAAGCCGGCACGAAGATCGCCCGCGCCGCGCATCGCGAAGCCGGCGAGATGCTGCTCGG CGGCCAGGAGCAGTTCTACCTGGAAGGCCAGATTTCGTACGCGGTGCCGAAAGACGACGACGGCATGCACGTCTACTGCT CGACGCAGCATCCGACCGAGATGCAGCACCTGGTCGCGCATGCGTTGGGCGTGGCGTCGCACAACGTGCTGATCGAATGC CGCCGTATGGGCGGCGGCTTCGGCGGCAAGGAATCGCAATCGGGTCTGTTCGCGTGCTGCGCGGCGCTCGCCGCATGGAA GCTGCTGTGCCCGGTGAAACTGCGTCCGGACCGTGACGACGACATGATGGTCACGGGCAAGCGCCACGATTTCCACTACA CGTATGAAGTCGGCTACGACGACAAGGGCGTGATCGACGGCGTGACGGTCGACATGACCTCGCGCTGCGGCTTTTCCGCC GACCTGTCCGGTCCGGTGATGACACGCGCGCTGTGCCACTTCGACAACGCGTACTGGCTCCCGGATGTCACGATCGACGG CTTCTGCGGCAAGACCAATACGCAGTCGAACACGGCGTTCCGCGGCTTCGGCGGTCCGCAAGGCGCGTTCGCGATCGAAT ACATCATGGACAACGTGGCGCGCTCGGTGGGCGAGGATTCGCTCGACGTGCGCCGCCGCAATCTGTACGGCAAGACCGAG CGCAACCAGACGCCGTACGGCCAGATCGTCGAAGACAACGTGATCCACGAGTTGATCGACGAACTCGAAGCGACCAGCGA ATACCGCGCGCGGCGCGCGGCGATCAACGAGTTCAACGCGAACAACGCAATCCTGAAGAAGGGCATGGCGCTGACGCCGG TCAAGTTCGGTATCGCGTTCAACGTGACCCACTTCAATCAGGCCGGCGCGCTGGTGCATATCTACACCGACGGTTCGGTG CTGGTGAACCACGGCGGCACCGAAATGGGCCAGGGTTTGAACACCAAGGTCGCGCAGGTCGTCGCGCATGAACTGGGCAT TGGCTTTAACCGCATTCGCGTGACGGCAACCGACACCAGCAAGATCGCCAATACGTCGGCGACGGCGGCCTCGACGGGCT CCGATCTGAACGGCAAGGCCGCGCAGGACGCTGCGCGCCAGTTGCGCGAACGTCTGTCCGCGTTTGCCGCTGAGCGCTTC GGCGCGGGACAGGTGAGCGCGTCGGAAGTGCGCTTCGCGCATGACCGGGTGGTGGTGGGCGATTCAGTCGTGCCGTTCGA GGAAGTGATCGCGAAGGCTTATCTGGCGCGTATCCAGCTCTGGTCGGACGGCTTCTATGCGACGCCCAAGCTCTACTGGG ATCAATCGAAGCTGCAAGGCCGGCCGTTCTACTACTACTCGTACGGCGCGGCCGTGTCGGAAGTGGTGATCGACACGTTG ACCGGCGAAATGCGCGTGCTTCGTGCGGACGCGTTGCACGACGTGGGCGCCTCGTTGAACCCGGCACTCGACGTCGGCCA GGTGGAAGGCGCCTTCATTCAGGGCATGGGCTGGCTCACGACCGAAGAACTGTGGTGGAACGCGGGCGGCAAGCTGATGA CGCACGCGCCGTCCACCTACAAGATTCCGACCGTCAACGATACGCCGCCGGACTTCCGCGTGCGCCTCTTCAAGAACCGC AACGCCGAGGACAGCATCCATCGTTCGAAGGCGACCGGCGAGCCGCCGCTGCTGCTGCCGTTCTCGGTGTTCTTCGCCGT GCGCGATGCGGTGTCGGCAGTCGGCGGCCATAAGGTTAATCCGCCGCTGAACGCACCCGCGACCAGCGAGGAAATCCTCA AGGCGGTCGGCGCGGTGCGGGCTGCCACCGCGGCGCCGCGCCGTTAA
Upstream 100 bases:
>100_bases ACAATCCGCTGCCGAAGAGCGCGCTGGACGTGCGCGCGGTCGCCGCGGCCTGCGCGCCGGCCGGCGTCTGAAAAGCCCAA AGGATACGGAGAACACAACA
Downstream 100 bases:
>100_bases GTGTGGCCGAAGCGCAGTAACGAACGAGCCGGGAAACCAGCGCATGGACAACACGCTCACTGGAATTGGAACGATCGCCA TGAACGATTTTTCGTCCGTT
Product: xanthine dehydrogenase, molybdenum binding subunit apoprotein / xanthine oxidase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 788; Mature: 788
Protein sequence:
>788_residues MNQQAEPFLKNLQDPDDFTQVHISRPHESAHLHVSGRATYTDDIPTLAGTLHAALGLSSKAHAKIVSISLDKVRATPGVV AIFTADDIPGVNDVGPIIHGDDPILADGLVQYIGQPIFIVVATSHETARLAARRAEIVYEELPAILTAQQARAANQHVLP PMKLARGEAGTKIARAAHREAGEMLLGGQEQFYLEGQISYAVPKDDDGMHVYCSTQHPTEMQHLVAHALGVASHNVLIEC RRMGGGFGGKESQSGLFACCAALAAWKLLCPVKLRPDRDDDMMVTGKRHDFHYTYEVGYDDKGVIDGVTVDMTSRCGFSA DLSGPVMTRALCHFDNAYWLPDVTIDGFCGKTNTQSNTAFRGFGGPQGAFAIEYIMDNVARSVGEDSLDVRRRNLYGKTE RNQTPYGQIVEDNVIHELIDELEATSEYRARRAAINEFNANNAILKKGMALTPVKFGIAFNVTHFNQAGALVHIYTDGSV LVNHGGTEMGQGLNTKVAQVVAHELGIGFNRIRVTATDTSKIANTSATAASTGSDLNGKAAQDAARQLRERLSAFAAERF GAGQVSASEVRFAHDRVVVGDSVVPFEEVIAKAYLARIQLWSDGFYATPKLYWDQSKLQGRPFYYYSYGAAVSEVVIDTL TGEMRVLRADALHDVGASLNPALDVGQVEGAFIQGMGWLTTEELWWNAGGKLMTHAPSTYKIPTVNDTPPDFRVRLFKNR NAEDSIHRSKATGEPPLLLPFSVFFAVRDAVSAVGGHKVNPPLNAPATSEEILKAVGAVRAATAAPRR
Sequences:
>Translated_788_residues MNQQAEPFLKNLQDPDDFTQVHISRPHESAHLHVSGRATYTDDIPTLAGTLHAALGLSSKAHAKIVSISLDKVRATPGVV AIFTADDIPGVNDVGPIIHGDDPILADGLVQYIGQPIFIVVATSHETARLAARRAEIVYEELPAILTAQQARAANQHVLP PMKLARGEAGTKIARAAHREAGEMLLGGQEQFYLEGQISYAVPKDDDGMHVYCSTQHPTEMQHLVAHALGVASHNVLIEC RRMGGGFGGKESQSGLFACCAALAAWKLLCPVKLRPDRDDDMMVTGKRHDFHYTYEVGYDDKGVIDGVTVDMTSRCGFSA DLSGPVMTRALCHFDNAYWLPDVTIDGFCGKTNTQSNTAFRGFGGPQGAFAIEYIMDNVARSVGEDSLDVRRRNLYGKTE RNQTPYGQIVEDNVIHELIDELEATSEYRARRAAINEFNANNAILKKGMALTPVKFGIAFNVTHFNQAGALVHIYTDGSV LVNHGGTEMGQGLNTKVAQVVAHELGIGFNRIRVTATDTSKIANTSATAASTGSDLNGKAAQDAARQLRERLSAFAAERF GAGQVSASEVRFAHDRVVVGDSVVPFEEVIAKAYLARIQLWSDGFYATPKLYWDQSKLQGRPFYYYSYGAAVSEVVIDTL TGEMRVLRADALHDVGASLNPALDVGQVEGAFIQGMGWLTTEELWWNAGGKLMTHAPSTYKIPTVNDTPPDFRVRLFKNR NAEDSIHRSKATGEPPLLLPFSVFFAVRDAVSAVGGHKVNPPLNAPATSEEILKAVGAVRAATAAPRR >Mature_788_residues MNQQAEPFLKNLQDPDDFTQVHISRPHESAHLHVSGRATYTDDIPTLAGTLHAALGLSSKAHAKIVSISLDKVRATPGVV AIFTADDIPGVNDVGPIIHGDDPILADGLVQYIGQPIFIVVATSHETARLAARRAEIVYEELPAILTAQQARAANQHVLP PMKLARGEAGTKIARAAHREAGEMLLGGQEQFYLEGQISYAVPKDDDGMHVYCSTQHPTEMQHLVAHALGVASHNVLIEC RRMGGGFGGKESQSGLFACCAALAAWKLLCPVKLRPDRDDDMMVTGKRHDFHYTYEVGYDDKGVIDGVTVDMTSRCGFSA DLSGPVMTRALCHFDNAYWLPDVTIDGFCGKTNTQSNTAFRGFGGPQGAFAIEYIMDNVARSVGEDSLDVRRRNLYGKTE RNQTPYGQIVEDNVIHELIDELEATSEYRARRAAINEFNANNAILKKGMALTPVKFGIAFNVTHFNQAGALVHIYTDGSV LVNHGGTEMGQGLNTKVAQVVAHELGIGFNRIRVTATDTSKIANTSATAASTGSDLNGKAAQDAARQLRERLSAFAAERF GAGQVSASEVRFAHDRVVVGDSVVPFEEVIAKAYLARIQLWSDGFYATPKLYWDQSKLQGRPFYYYSYGAAVSEVVIDTL TGEMRVLRADALHDVGASLNPALDVGQVEGAFIQGMGWLTTEELWWNAGGKLMTHAPSTYKIPTVNDTPPDFRVRLFKNR NAEDSIHRSKATGEPPLLLPFSVFFAVRDAVSAVGGHKVNPPLNAPATSEEILKAVGAVRAATAAPRR
Specific function: Presumed to be a dehydrogenase, but possibly an oxidase. Participates in limited purine salvage (requires aspartate) but does not support aerobic growth on purines as the sole carbon source (purine catabolism) [H]
COG id: COG4631
COG function: function code F; Xanthine dehydrogenase, molybdopterin-binding subunit B
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the xanthine dehydrogenase family [H]
Homologues:
Organism=Homo sapiens, GI91823271, Length=758, Percent_Identity=42.8759894459103, Blast_Score=593, Evalue=1e-169, Organism=Homo sapiens, GI71773480, Length=771, Percent_Identity=38.0025940337224, Blast_Score=473, Evalue=1e-133, Organism=Escherichia coli, GI1789230, Length=766, Percent_Identity=28.7206266318538, Blast_Score=209, Evalue=5e-55, Organism=Escherichia coli, GI1789246, Length=774, Percent_Identity=25.8397932816537, Blast_Score=187, Evalue=3e-48, Organism=Escherichia coli, GI1786478, Length=779, Percent_Identity=23.7483953786906, Blast_Score=84, Evalue=3e-17, Organism=Caenorhabditis elegans, GI17540638, Length=766, Percent_Identity=39.9477806788512, Blast_Score=496, Evalue=1e-140, Organism=Caenorhabditis elegans, GI32566215, Length=709, Percent_Identity=31.4527503526093, Blast_Score=337, Evalue=1e-92, Organism=Caenorhabditis elegans, GI17539860, Length=723, Percent_Identity=32.5034578146611, Blast_Score=327, Evalue=2e-89, Organism=Drosophila melanogaster, GI17737937, Length=760, Percent_Identity=42.2368421052632, Blast_Score=571, Evalue=1e-163, Organism=Drosophila melanogaster, GI24647193, Length=770, Percent_Identity=32.4675324675325, Blast_Score=330, Evalue=3e-90, Organism=Drosophila melanogaster, GI24647199, Length=770, Percent_Identity=31.9480519480519, Blast_Score=328, Evalue=8e-90, Organism=Drosophila melanogaster, GI24647195, Length=774, Percent_Identity=30.6201550387597, Blast_Score=300, Evalue=3e-81, Organism=Drosophila melanogaster, GI24647197, Length=774, Percent_Identity=30.6201550387597, Blast_Score=299, Evalue=5e-81, Organism=Drosophila melanogaster, GI24647201, Length=764, Percent_Identity=31.282722513089, Blast_Score=297, Evalue=2e-80,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000674 - InterPro: IPR008274 [H]
Pfam domain/function: PF01315 Ald_Xan_dh_C; PF02738 Ald_Xan_dh_C2 [H]
EC number: =1.17.1.4 [H]
Molecular weight: Translated: 85415; Mature: 85415
Theoretical pI: Translated: 6.51; Mature: 6.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNQQAEPFLKNLQDPDDFTQVHISRPHESAHLHVSGRATYTDDIPTLAGTLHAALGLSSK CCCCCCHHHHCCCCCCCCEEEEEECCCCCEEEEEECCEEECCCCHHHHHHHHHHHCCCCC AHAKIVSISLDKVRATPGVVAIFTADDIPGVNDVGPIIHGDDPILADGLVQYIGQPIFIV CCEEEEEEEHHHHCCCCCEEEEEECCCCCCCCCCCCEEECCCCHHHHHHHHHCCCCEEEE VATSHETARLAARRAEIVYEELPAILTAQQARAANQHVLPPMKLARGEAGTKIARAAHRE EECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCHHHHHHHHHH AGEMLLGGQEQFYLEGQISYAVPKDDDGMHVYCSTQHPTEMQHLVAHALGVASHNVLIEC HCHHHCCCCCEEEEEEEEEEECCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEE RRMGGGFGGKESQSGLFACCAALAAWKLLCPVKLRPDRDDDMMVTGKRHDFHYTYEVGYD EECCCCCCCCCCCCHHHHHHHHHHHHHHHCCEEECCCCCCCEEEECCCCCEEEEEEECCC DKGVIDGVTVDMTSRCGFSADLSGPVMTRALCHFDNAYWLPDVTIDGFCGKTNTQSNTAF CCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHCCCCEECCCCEECCCCCCCCCCCCCEE RGFGGPQGAFAIEYIMDNVARSVGEDSLDVRRRNLYGKTERNQTPYGQIVEDNVIHELID ECCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHH ELEATSEYRARRAAINEFNANNAILKKGMALTPVKFGIAFNVTHFNQAGALVHIYTDGSV HHHHHHHHHHHHHHHHHCCCCCHHHHCCCEECEEEEEEEEEEEEECCCCCEEEEEECCEE LVNHGGTEMGQGLNTKVAQVVAHELGIGFNRIRVTATDTSKIANTSATAASTGSDLNGKA EEECCCHHHCCCCCHHHHHHHHHHHCCCEEEEEEEECCCHHHCCCCCCCCCCCCCCCCHH AQDAARQLRERLSAFAAERFGAGQVSASEVRFAHDRVVVGDSVVPFEEVIAKAYLARIQL HHHHHHHHHHHHHHHHHHHCCCCCCCHHHEEEECCEEEECCCCCCHHHHHHHHHHHHHEE WSDGFYATPKLYWDQSKLQGRPFYYYSYGAAVSEVVIDTLTGEMRVLRADALHDVGASLN ECCCCEECCEEEECHHHCCCCCEEEEECCHHHHHHHHHHHCCCCEEHHHHHHHHCCCCCC PALDVGQVEGAFIQGMGWLTTEELWWNAGGKLMTHAPSTYKIPTVNDTPPDFRVRLFKNR CCCCCCCCCCHHEECCCCCCHHHHHHCCCCCEEEECCCCEECCCCCCCCCCCEEEEEECC NAEDSIHRSKATGEPPLLLPFSVFFAVRDAVSAVGGHKVNPPLNAPATSEEILKAVGAVR CCHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHH AATAAPRR HHHCCCCC >Mature Secondary Structure MNQQAEPFLKNLQDPDDFTQVHISRPHESAHLHVSGRATYTDDIPTLAGTLHAALGLSSK CCCCCCHHHHCCCCCCCCEEEEEECCCCCEEEEEECCEEECCCCHHHHHHHHHHHCCCCC AHAKIVSISLDKVRATPGVVAIFTADDIPGVNDVGPIIHGDDPILADGLVQYIGQPIFIV CCEEEEEEEHHHHCCCCCEEEEEECCCCCCCCCCCCEEECCCCHHHHHHHHHCCCCEEEE VATSHETARLAARRAEIVYEELPAILTAQQARAANQHVLPPMKLARGEAGTKIARAAHRE EECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCHHHHHHHHHH AGEMLLGGQEQFYLEGQISYAVPKDDDGMHVYCSTQHPTEMQHLVAHALGVASHNVLIEC HCHHHCCCCCEEEEEEEEEEECCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEE RRMGGGFGGKESQSGLFACCAALAAWKLLCPVKLRPDRDDDMMVTGKRHDFHYTYEVGYD EECCCCCCCCCCCCHHHHHHHHHHHHHHHCCEEECCCCCCCEEEECCCCCEEEEEEECCC DKGVIDGVTVDMTSRCGFSADLSGPVMTRALCHFDNAYWLPDVTIDGFCGKTNTQSNTAF CCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHCCCCEECCCCEECCCCCCCCCCCCCEE RGFGGPQGAFAIEYIMDNVARSVGEDSLDVRRRNLYGKTERNQTPYGQIVEDNVIHELID ECCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHH ELEATSEYRARRAAINEFNANNAILKKGMALTPVKFGIAFNVTHFNQAGALVHIYTDGSV HHHHHHHHHHHHHHHHHCCCCCHHHHCCCEECEEEEEEEEEEEEECCCCCEEEEEECCEE LVNHGGTEMGQGLNTKVAQVVAHELGIGFNRIRVTATDTSKIANTSATAASTGSDLNGKA EEECCCHHHCCCCCHHHHHHHHHHHCCCEEEEEEEECCCHHHCCCCCCCCCCCCCCCCHH AQDAARQLRERLSAFAAERFGAGQVSASEVRFAHDRVVVGDSVVPFEEVIAKAYLARIQL HHHHHHHHHHHHHHHHHHHCCCCCCCHHHEEEECCEEEECCCCCCHHHHHHHHHHHHHEE WSDGFYATPKLYWDQSKLQGRPFYYYSYGAAVSEVVIDTLTGEMRVLRADALHDVGASLN ECCCCEECCEEEECHHHCCCCCEEEEECCHHHHHHHHHHHCCCCEEHHHHHHHHCCCCCC PALDVGQVEGAFIQGMGWLTTEELWWNAGGKLMTHAPSTYKIPTVNDTPPDFRVRLFKNR CCCCCCCCCCHHEECCCCCCHHHHHHCCCCCEEEECCCCEECCCCCCCCCCCEEEEEECC NAEDSIHRSKATGEPPLLLPFSVFFAVRDAVSAVGGHKVNPPLNAPATSEEILKAVGAVR CCHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHH AATAAPRR HHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]