| Definition | Burkholderia xenovorans LB400 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_007951 |
| Length | 4,895,836 |
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The map label for this gene is ybjL [C]
Identifier: 91781951
GI number: 91781951
Start: 636067
End: 637749
Strand: Direct
Name: ybjL [C]
Synonym: Bxe_A3892
Alternate gene names: 91781951
Gene position: 636067-637749 (Clockwise)
Preceding gene: 91781950
Following gene: 91781952
Centisome position: 12.99
GC content: 64.41
Gene sequence:
>1683_bases ATGGACTGGCTACATCATATCTTTCAGAAATCACCCGAGATTGCGCTGTTTCTGTCGCTCGCGGCCGGCTACTTCATCGG CCAGATCAACTTCGGCAAATTCCAGCTGGGCGGTGTGGGCGGGTCGTTGCTGGCCGCGGTCGTGATCAGTCAGGCGGGCG TGACGATCGACAACGGTGTGAAGTCGGTCATGTTCGCCGTCTTCATCTACGCGGTCGGCTACGACTCCGGTCCGGGCTTC TTCAACTCACTGAACCGCAAGACGCTGCGTGAGATCGCGATGGCCGTCTTTCTGGCCGTCACCGCGCTGATCACCGTGGT CGTATGCGCGAAGCTGTTCCACCTGAACAAGGGGCTTGCCGCCGGACTCGCGGGCGGCGCGCTCACGCAGTCGGCGATCA TCGGCACGGCGGGCGACGCGATCGCGCGTCTCGGCCTGCCCGCCGATCAGGTCAAGTCGCTGCAATCGGACGTGGCGATT GCCTACGCGGTGACTTACGTATTCGGCTCGTTGGGCGCGATCATCGTGTGCGTGAATATTCTGCCCAAGTTCATGGGGCA GGGTTTGCGCGAAGCCTCGGTCGAAGTGGAGCGCGAACTGACGGCGGGCGCGGCGGCCGCTGGCCCGGGGCAACTCTCCG CGTTGCCCGAGATGGTGGGCCGCGCGTACAAGATCGATGTCAGCGCCGGAAAAACGGTGAAGGCTGTGGAGACGCTGCAT CAAGACCTGTTGACGATCGAGCGGATCAAGCGGGACGGCCAGCCGCTCGACCCGGCGCCCGGTCTGATCCTGAAACCCGG CGACGTGGTCCTCGTGGTCGGCCGCCGCGAGGCAGTGGTCGAATTCGGCGCGGCCGGAGGCGAGGTTGCCACCGTGGAGG ACGTCGGCGCCGTCATGCAGACCCGCGAAGCCGTGTTCACGCGCAAGGGCATGAACCACACCACGATCGCCGCCGCGCGG GCCGTGGTGGATCGCGATATGCGGCACGGCGTCTATATCCAGAGTATCTCGCGCGCAGGCCAGCCGCTGCCGGTCCTGCC GGAAACCAAACTGGAGCACGGCGACGTCATCACCTTTTACGGCTCGCCGAAAGACACCAAGCGAGCCGCCGAGGCAGCCG GCTACGAACTGCCGTACAGCAACAAGACCGACTTCATTTACATGGGCGTCGGCATTGTGCTCGGCTTGTTGATCGGGCTG ATCGTCGTCAACGTGGCCGGCATTCCGCTCACCCTTGGTTCGGGTGGCGGCTGCCTGCTGGCCGGGTTGCTGTTCGGCTG GATGCGCGGCAAGCATCCAATGTACGGCGCGATGCCGTCCGCGGCCTCGCAGTTGCTGAAGGACTTCGGCCTTGCGGCCT TCGTCGCGGTGGTCGGTTTGAACTCCGGCTTGCAGGCCGTGGTCACCGTCAAACAGAGCGGCATGACGATCTTCCTGCTC GGTGTGTTCGTCACGCTGTTTCCGCTATTGCTCACCATGCTGTTCGGCCGCTACGTGCTGAAGTACAACAACTCGGCCAT TCTGGCCGGCGCGCTGTCCGGCTCGCGCAGTGCGAATCCGGCATTCGGCGGCGTGCTCGACAAGGCCGAAAGCGCTGTGC CGACCGTGCCGTTCGCGATCACGTATGCCATCGCGAACGTTGCGTTGACGCTGCTCGGTCCGCTCGTGGTCGGGCTGGTC TAG
Upstream 100 bases:
>100_bases AACGGCAAACGGCAAACGGTATGCGGCGCGACACGATTGCGCCGCGCATGCACAGGCAGCAACCCGTACTCAGTATCGCA AACTATCCAGCGAGGGCACG
Downstream 100 bases:
>100_bases CGCACGTCTATCGATCTCTCTTACGCCGGCGTTAATCGGGCGATCATTCGCCGCGCCGGCGTCTTTCACTTGGCTCAGGA GAACGCATCATGGCAAAAGA
Product: aspartate/alanine exchanger family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 560; Mature: 560
Protein sequence:
>560_residues MDWLHHIFQKSPEIALFLSLAAGYFIGQINFGKFQLGGVGGSLLAAVVISQAGVTIDNGVKSVMFAVFIYAVGYDSGPGF FNSLNRKTLREIAMAVFLAVTALITVVVCAKLFHLNKGLAAGLAGGALTQSAIIGTAGDAIARLGLPADQVKSLQSDVAI AYAVTYVFGSLGAIIVCVNILPKFMGQGLREASVEVERELTAGAAAAGPGQLSALPEMVGRAYKIDVSAGKTVKAVETLH QDLLTIERIKRDGQPLDPAPGLILKPGDVVLVVGRREAVVEFGAAGGEVATVEDVGAVMQTREAVFTRKGMNHTTIAAAR AVVDRDMRHGVYIQSISRAGQPLPVLPETKLEHGDVITFYGSPKDTKRAAEAAGYELPYSNKTDFIYMGVGIVLGLLIGL IVVNVAGIPLTLGSGGGCLLAGLLFGWMRGKHPMYGAMPSAASQLLKDFGLAAFVAVVGLNSGLQAVVTVKQSGMTIFLL GVFVTLFPLLLTMLFGRYVLKYNNSAILAGALSGSRSANPAFGGVLDKAESAVPTVPFAITYAIANVALTLLGPLVVGLV
Sequences:
>Translated_560_residues MDWLHHIFQKSPEIALFLSLAAGYFIGQINFGKFQLGGVGGSLLAAVVISQAGVTIDNGVKSVMFAVFIYAVGYDSGPGF FNSLNRKTLREIAMAVFLAVTALITVVVCAKLFHLNKGLAAGLAGGALTQSAIIGTAGDAIARLGLPADQVKSLQSDVAI AYAVTYVFGSLGAIIVCVNILPKFMGQGLREASVEVERELTAGAAAAGPGQLSALPEMVGRAYKIDVSAGKTVKAVETLH QDLLTIERIKRDGQPLDPAPGLILKPGDVVLVVGRREAVVEFGAAGGEVATVEDVGAVMQTREAVFTRKGMNHTTIAAAR AVVDRDMRHGVYIQSISRAGQPLPVLPETKLEHGDVITFYGSPKDTKRAAEAAGYELPYSNKTDFIYMGVGIVLGLLIGL IVVNVAGIPLTLGSGGGCLLAGLLFGWMRGKHPMYGAMPSAASQLLKDFGLAAFVAVVGLNSGLQAVVTVKQSGMTIFLL GVFVTLFPLLLTMLFGRYVLKYNNSAILAGALSGSRSANPAFGGVLDKAESAVPTVPFAITYAIANVALTLLGPLVVGLV >Mature_560_residues MDWLHHIFQKSPEIALFLSLAAGYFIGQINFGKFQLGGVGGSLLAAVVISQAGVTIDNGVKSVMFAVFIYAVGYDSGPGF FNSLNRKTLREIAMAVFLAVTALITVVVCAKLFHLNKGLAAGLAGGALTQSAIIGTAGDAIARLGLPADQVKSLQSDVAI AYAVTYVFGSLGAIIVCVNILPKFMGQGLREASVEVERELTAGAAAAGPGQLSALPEMVGRAYKIDVSAGKTVKAVETLH QDLLTIERIKRDGQPLDPAPGLILKPGDVVLVVGRREAVVEFGAAGGEVATVEDVGAVMQTREAVFTRKGMNHTTIAAAR AVVDRDMRHGVYIQSISRAGQPLPVLPETKLEHGDVITFYGSPKDTKRAAEAAGYELPYSNKTDFIYMGVGIVLGLLIGL IVVNVAGIPLTLGSGGGCLLAGLLFGWMRGKHPMYGAMPSAASQLLKDFGLAAFVAVVGLNSGLQAVVTVKQSGMTIFLL GVFVTLFPLLLTMLFGRYVLKYNNSAILAGALSGSRSANPAFGGVLDKAESAVPTVPFAITYAIANVALTLLGPLVVGLV
Specific function: Unknown
COG id: COG2985
COG function: function code R; Predicted permease
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 2 RCK C-terminal domains [H]
Homologues:
Organism=Escherichia coli, GI1787071, Length=550, Percent_Identity=30.7272727272727, Blast_Score=247, Evalue=2e-66, Organism=Escherichia coli, GI87082315, Length=531, Percent_Identity=27.4952919020716, Blast_Score=144, Evalue=1e-35,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022457 - InterPro: IPR006037 - InterPro: IPR006512 [H]
Pfam domain/function: PF06826 Asp-Al_Ex; PF02080 TrkA_C [H]
EC number: NA
Molecular weight: Translated: 58301; Mature: 58301
Theoretical pI: Translated: 9.11; Mature: 9.11
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDWLHHIFQKSPEIALFLSLAAGYFIGQINFGKFQLGGVGGSLLAAVVISQAGVTIDNGV CCHHHHHHHCCCCCEEHHHHHHHHHEEEECCCEEEECCCCHHHHHHHHHHHCCCCHHHHH KSVMFAVFIYAVGYDSGPGFFNSLNRKTLREIAMAVFLAVTALITVVVCAKLFHLNKGLA HHHHHHHHHHHHCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH AGLAGGALTQSAIIGTAGDAIARLGLPADQVKSLQSDVAIAYAVTYVFGSLGAIIVCVNI HHCCCCHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LPKFMGQGLREASVEVERELTAGAAAAGPGQLSALPEMVGRAYKIDVSAGKTVKAVETLH HHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHH QDLLTIERIKRDGQPLDPAPGLILKPGDVVLVVGRREAVVEFGAAGGEVATVEDVGAVMQ HHHHHHHHHHHCCCCCCCCCCEEECCCCEEEEECCHHHHHHCCCCCCCEEEHHHHHHHHH TREAVFTRKGMNHTTIAAARAVVDRDMRHGVYIQSISRAGQPLPVLPETKLEHGDVITFY HHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCCCEEEEE GSPKDTKRAAEAAGYELPYSNKTDFIYMGVGIVLGLLIGLIVVNVAGIPLTLGSGGGCLL CCCCHHHHHHHHCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHH AGLLFGWMRGKHPMYGAMPSAASQLLKDFGLAAFVAVVGLNSGLQAVVTVKQSGMTIFLL HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCEEHHH GVFVTLFPLLLTMLFGRYVLKYNNSAILAGALSGSRSANPAFGGVLDKAESAVPTVPFAI HHHHHHHHHHHHHHHHHHHEEECCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCHHHH TYAIANVALTLLGPLVVGLV HHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MDWLHHIFQKSPEIALFLSLAAGYFIGQINFGKFQLGGVGGSLLAAVVISQAGVTIDNGV CCHHHHHHHCCCCCEEHHHHHHHHHEEEECCCEEEECCCCHHHHHHHHHHHCCCCHHHHH KSVMFAVFIYAVGYDSGPGFFNSLNRKTLREIAMAVFLAVTALITVVVCAKLFHLNKGLA HHHHHHHHHHHHCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH AGLAGGALTQSAIIGTAGDAIARLGLPADQVKSLQSDVAIAYAVTYVFGSLGAIIVCVNI HHCCCCHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LPKFMGQGLREASVEVERELTAGAAAAGPGQLSALPEMVGRAYKIDVSAGKTVKAVETLH HHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHH QDLLTIERIKRDGQPLDPAPGLILKPGDVVLVVGRREAVVEFGAAGGEVATVEDVGAVMQ HHHHHHHHHHHCCCCCCCCCCEEECCCCEEEEECCHHHHHHCCCCCCCEEEHHHHHHHHH TREAVFTRKGMNHTTIAAARAVVDRDMRHGVYIQSISRAGQPLPVLPETKLEHGDVITFY HHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCCCEEEEE GSPKDTKRAAEAAGYELPYSNKTDFIYMGVGIVLGLLIGLIVVNVAGIPLTLGSGGGCLL CCCCHHHHHHHHCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHH AGLLFGWMRGKHPMYGAMPSAASQLLKDFGLAAFVAVVGLNSGLQAVVTVKQSGMTIFLL HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCEEHHH GVFVTLFPLLLTMLFGRYVLKYNNSAILAGALSGSRSANPAFGGVLDKAESAVPTVPFAI HHHHHHHHHHHHHHHHHHHEEECCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCHHHH TYAIANVALTLLGPLVVGLV HHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA