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The map label for this gene is yggS [H]

Identifier: 91781864

GI number: 91781864

Start: 538510

End: 539208

Strand: Reverse

Name: yggS [H]

Synonym: Bxe_A3981

Alternate gene names: 91781864

Gene position: 539208-538510 (Counterclockwise)

Preceding gene: 91781865

Following gene: 91781863

Centisome position: 11.01

GC content: 65.81

Gene sequence:

>699_bases
ATGCCCGATCTGATTCACAACCTCGAAGCGGTGCGGCAGCGCATCGCCACGGCCGCGCACGTGGCCGGACGCGATACACG
TTCGATCCATCTGCTCGCGGTCTCGAAGACTTTCCCCGCCGAAGACGTGCGCGCCGCCTACGCTGCCGGCCAGCGCGCGT
TCGGCGAGAACTACGTGCAGGAAGCCATCACCAAGATCGAGGCGCTCGCCGATCTGCGCGCCACGATCGAATGGCATTTC
ATCGGCCCTTTGCAATCGAACAAGACGCGCCCCGTCGCCGAGCATTTCGACTGGGTGCACTCGGTCGACCGGCTGAAGAT
CGCGCAGCGGCTTTCGGAGCAGCGGCCGGACAATCTGCCGCCGCTGAACGTGTGTCTACAGGTCAACATCAGCGGCGAGG
CGTCGAAGAGCGGCGTCGGCATTGCCGAGGCGGCGCAGGTCGCGCAGGCGATCGCCGCACTGCCGAAGCTTAAGCTGCGC
GGCCTGATGGCGATTCCCGAACCGGCCGGGAGCATCGACGAGCAACGCGTGCCGCATCGGCAGTTGCGCGAGTTGTTCGA
GCGTCTGCGCGACGGCGGACTCGCACTCGATACGCTGTCGATGGGCATGTCGAGCGACCTCGAGGCCGCCGTACTGGAAG
GCGCGACCATCGTGCGCGTAGGCACCGCGATCTTCGGCGCGCGAGATTACTCTAACTGA

Upstream 100 bases:

>100_bases
AGCGGCACGTCCACGCCGGTTGCGCACTGGATCGAACTGGTCGAGCACATGCTGTCCGTATAATCGGGTAATCGACTTTC
GCTGGACTTCCGGATCCGTC

Downstream 100 bases:

>100_bases
GCTTCGCGAACCTTTTCAGGCTCCGTTGGCTCTTCACGGCACTTCATCCGGAACATCATGAAAATTGCTTTTATCGGCGG
TGGCAACATGGCCGCCGCGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 232; Mature: 231

Protein sequence:

>232_residues
MPDLIHNLEAVRQRIATAAHVAGRDTRSIHLLAVSKTFPAEDVRAAYAAGQRAFGENYVQEAITKIEALADLRATIEWHF
IGPLQSNKTRPVAEHFDWVHSVDRLKIAQRLSEQRPDNLPPLNVCLQVNISGEASKSGVGIAEAAQVAQAIAALPKLKLR
GLMAIPEPAGSIDEQRVPHRQLRELFERLRDGGLALDTLSMGMSSDLEAAVLEGATIVRVGTAIFGARDYSN

Sequences:

>Translated_232_residues
MPDLIHNLEAVRQRIATAAHVAGRDTRSIHLLAVSKTFPAEDVRAAYAAGQRAFGENYVQEAITKIEALADLRATIEWHF
IGPLQSNKTRPVAEHFDWVHSVDRLKIAQRLSEQRPDNLPPLNVCLQVNISGEASKSGVGIAEAAQVAQAIAALPKLKLR
GLMAIPEPAGSIDEQRVPHRQLRELFERLRDGGLALDTLSMGMSSDLEAAVLEGATIVRVGTAIFGARDYSN
>Mature_231_residues
PDLIHNLEAVRQRIATAAHVAGRDTRSIHLLAVSKTFPAEDVRAAYAAGQRAFGENYVQEAITKIEALADLRATIEWHFI
GPLQSNKTRPVAEHFDWVHSVDRLKIAQRLSEQRPDNLPPLNVCLQVNISGEASKSGVGIAEAAQVAQAIAALPKLKLRG
LMAIPEPAGSIDEQRVPHRQLRELFERLRDGGLALDTLSMGMSSDLEAAVLEGATIVRVGTAIFGARDYSN

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=239, Percent_Identity=40.5857740585774, Blast_Score=131, Evalue=6e-31,
Organism=Escherichia coli, GI1789321, Length=233, Percent_Identity=57.0815450643777, Blast_Score=261, Evalue=3e-71,
Organism=Caenorhabditis elegans, GI17533025, Length=228, Percent_Identity=38.5964912280702, Blast_Score=130, Evalue=4e-31,
Organism=Saccharomyces cerevisiae, GI6319435, Length=241, Percent_Identity=38.1742738589212, Blast_Score=124, Evalue=9e-30,
Organism=Drosophila melanogaster, GI45550861, Length=214, Percent_Identity=41.1214953271028, Blast_Score=123, Evalue=8e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 25253; Mature: 25122

Theoretical pI: Translated: 6.90; Mature: 6.90

Prosite motif: PS01211 UPF0001

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDLIHNLEAVRQRIATAAHVAGRDTRSIHLLAVSKTFPAEDVRAAYAAGQRAFGENYVQ
CCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHH
EAITKIEALADLRATIEWHFIGPLQSNKTRPVAEHFDWVHSVDRLKIAQRLSEQRPDNLP
HHHHHHHHHHHHHHHEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PLNVCLQVNISGEASKSGVGIAEAAQVAQAIAALPKLKLRGLMAIPEPAGSIDEQRVPHR
CEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCHH
QLRELFERLRDGGLALDTLSMGMSSDLEAAVLEGATIVRVGTAIFGARDYSN
HHHHHHHHHHCCCCEEHHHHCCCCCCHHHHHHCCCHHEEHHHHHHCCCCCCC
>Mature Secondary Structure 
PDLIHNLEAVRQRIATAAHVAGRDTRSIHLLAVSKTFPAEDVRAAYAAGQRAFGENYVQ
CHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHH
EAITKIEALADLRATIEWHFIGPLQSNKTRPVAEHFDWVHSVDRLKIAQRLSEQRPDNLP
HHHHHHHHHHHHHHHEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PLNVCLQVNISGEASKSGVGIAEAAQVAQAIAALPKLKLRGLMAIPEPAGSIDEQRVPHR
CEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCHH
QLRELFERLRDGGLALDTLSMGMSSDLEAAVLEGATIVRVGTAIFGARDYSN
HHHHHHHHHHCCCCEEHHHHCCCCCCHHHHHHCCCHHEEHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]