| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 90296803
Identifier: 90296803
GI number: 90296803
Start: 2505025
End: 2505474
Strand: Direct
Name: 90296803
Synonym: CYB_2406
Alternate gene names: NA
Gene position: 2505025-2505474 (Clockwise)
Preceding gene: 86609843
Following gene: 86609844
Centisome position: 82.22
GC content: 56.67
Gene sequence:
>450_bases ATGGCCTATGACAACGTCTGCAAATATCTGGCCGAGCGTTTCCCAGAGCAGTTTGCCCGCTGGCTCATGGGAGAAGTGGC TCGGCTCCGACTCTATCGGAGGTATCCTCACCTATCGGTGCAGCAGGTGGTCAAGGTGCTCCGCACCGCTAACGCGATTG ACTTGCGCAAAACGGGGTCGGAGGGAGTTTTCCAGACCTCTTTTCGTCTAGAGAGGCTGAGCCATGAGTTCGATGTTGTC CGCCTGTGGGAATGCGATTTGAGGGCCGGAGCGGATCGGCAAGCCCTGCTACCGTTTCGGGTTCTAAGCCAGGTGGAAGA TCCAGCAGAAACCTTGCGAGAGGTGGTCAGTGAGCTAGAGAGCTTGGCAGACCCCAGTGAGAGAAGGGAATTGGCAGCCG CAACAGCCGTCTTGGCGGGACTAGGTCGTGTTGATCTTATGTTAGGATAG
Upstream 100 bases:
>100_bases GCTCCGTCAGCGGCAGCATTTATGTGACGGTGGGGCAGCCTCACATCAAGGTAGATTCCATTACCGTGGGCGGTCGCTAA TTCCAGGGATCCACCTCGAC
Downstream 100 bases:
>100_bases AGGGAATAATTTATAGAGGAAAGAGGATGAAGTTGGTTTTTTTAGATGAAAACAAATGGCAGAAGATATTGGCTTTTTTA CAGACAGAAGAGAGAGTTAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 149; Mature: 148
Protein sequence:
>149_residues MAYDNVCKYLAERFPEQFARWLMGEVARLRLYRRYPHLSVQQVVKVLRTANAIDLRKTGSEGVFQTSFRLERLSHEFDVV RLWECDLRAGADRQALLPFRVLSQVEDPAETLREVVSELESLADPSERRELAAATAVLAGLGRVDLMLG
Sequences:
>Translated_149_residues MAYDNVCKYLAERFPEQFARWLMGEVARLRLYRRYPHLSVQQVVKVLRTANAIDLRKTGSEGVFQTSFRLERLSHEFDVV RLWECDLRAGADRQALLPFRVLSQVEDPAETLREVVSELESLADPSERRELAAATAVLAGLGRVDLMLG >Mature_148_residues AYDNVCKYLAERFPEQFARWLMGEVARLRLYRRYPHLSVQQVVKVLRTANAIDLRKTGSEGVFQTSFRLERLSHEFDVVR LWECDLRAGADRQALLPFRVLSQVEDPAETLREVVSELESLADPSERRELAAATAVLAGLGRVDLMLG
Specific function: Unknown
COG id: COG5464
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17036; Mature: 16905
Theoretical pI: Translated: 6.53; Mature: 6.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAYDNVCKYLAERFPEQFARWLMGEVARLRLYRRYPHLSVQQVVKVLRTANAIDLRKTGS CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHCCCC EGVFQTSFRLERLSHEFDVVRLWECDLRAGADRQALLPFRVLSQVEDPAETLREVVSELE CCHHHHHHHHHHHHHHHCCHHEEECHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH SLADPSERRELAAATAVLAGLGRVDLMLG HHCCHHHHHHHHHHHHHHHHCCHHHHCCC >Mature Secondary Structure AYDNVCKYLAERFPEQFARWLMGEVARLRLYRRYPHLSVQQVVKVLRTANAIDLRKTGS CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHCCCC EGVFQTSFRLERLSHEFDVVRLWECDLRAGADRQALLPFRVLSQVEDPAETLREVVSELE CCHHHHHHHHHHHHHHHCCHHEEECHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH SLADPSERRELAAATAVLAGLGRVDLMLG HHCCHHHHHHHHHHHHHHHHCCHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA