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The map label for this gene is omp13 [H]

Identifier: 89898530

GI number: 89898530

Start: 837739

End: 839295

Strand: Direct

Name: omp13 [H]

Synonym: CF0723

Alternate gene names: 89898530

Gene position: 837739-839295 (Clockwise)

Preceding gene: 89898529

Following gene: 89898531

Centisome position: 71.83

GC content: 40.72

Gene sequence:

>1557_bases
ATGAAATATCCAGTTTATTGGTTCCTAGTATCTTCAGGACTAATTGCCTCAAACACACTGAGCTTTGCTGCTGCTCAGCA
AGAAAATCTATCCTCCTCGGATAGCTATAACGGCAATACAGCGGGCAATGCAACATTCACGCCAAAATCCACCTCTAATT
CGGATGGAACGGTTTATACTTGCACAGGAGACGTATGCATTGCTTATGCGGGGAAAACAACTCCTCTATCGGGAAGTTGT
TTCTCTCAAAGTGCGGGAGATCTTTCTTTTATAGGTAATGGGTACTCTCTTTGTTTCGAAAGCATCACCGCCACAGGGAA
ACCCGGAGCCATTGAAACTACTGTTAATGATAAAAACGTATCTATCTCGGATTTCTCTATGTTTAACTGCTCCTTCTGTC
CTCCAGGAGTAACTGGATCAGGAGCCATTAAATCAATGGGAACAACCACTTTTGACAAAGACGTCAATATTCTATTTCAG
AAAAACTGTTCCTCAACAGCCGGGGGAGCTGTTAATTGCAAAGGACTCGTATTAAAAGGAACTTCGGGAATCGCTAATTT
TATAGAAAATAAATCTTCAGACAATGGCGGTGCAATAGAGTCTTCGGGAGAAAGCTTTATTGAAAACAATACTGGAATCA
TTAGTTTCTTAGGAAACTCTTCTGAGAAACAAGGTGGGGCCATCCATTCGGAGAACAGTATTACTGTGTCCAACAATAAT
AGTGTCGTGTTTTCTAAAAATACAACTACAGGAAGCTCAGGCTCTTCTGGAGGAGCAGTTTATTGTAATGGTAACTCGCA
AACCCCAAAACTAAAGTTCGAAGGAAACAAACAACTATCTTTTATTGAGAATACATCTACAACTAGTGGGGGAGCTATCT
ATGCAAAGAAGCTAACCATAAATTCTGGAGGCACCACAGTATTTTCTAATAACTCAACAACCAACGCCAATCCTAAAGGA
GGTGCTATTTGTTTAGATACAAGTGGAGAATGTAGTCTAACCGCAGAGCTTGGTGATATCATCTTTGATGGGAATAAAAT
AATAACAACTGGCAACAGCTCTTCAATAAAAAGAAATGCCATTGATTTAAATACTTCCGGTAAGTTTACCAAACTAAGTG
CCAAGGAAGGCTTTGGGATTTATTTCTATGACCCTATTGCTGATAGCGGAGACAACACCACAGCAATCGAGCTCAATAAA
ACTGAAAATGCGATTAATTACACAGGAAAAATTGTCTTTTCTGGAGAAACTCTATCTGCCCAAGAAAAAACTCAAGCAGA
TAACCTAACTTCAACGTTTAAACAACCGGTTACTCTATCTGCGGGATCTCTCATTCTTAAAGATGGTGTTACTGTAGAAG
CCAAGTCCTTTACTCAAACTCAAGGATCCGCGGTTATTATGGATGTGGGCACCACTCTACGGACTCCGTCCAATGACGGT
GATGCCATTACATTGCCCAATCTGAGCATAAACATCGCCTCGCTGGGGGGGGTACTCCTTCTTCTGCTAAAATCCAATCT
CAAACAACAGGTAAGCAAGTTACCGTTACAGATATAA

Upstream 100 bases:

>100_bases
TGCCCCATCCCGGGGCAGGGCCTCCCCACCCATTCCCCTTGACTTTTAAATATTTTTGTGATCGTTTAAGACTATCTCAA
ATCACCCAGAGCATGAACAT

Downstream 100 bases:

>100_bases
GTTACGTAGATGAAGACGGACATGCTTACGAATATCCTGTTTTTTCTAAAACTCGCGATTTTGCTTCCGCTATAACTCTC
CTGGCTGCTAATGGAACCCA

Product: outer membrane protein

Products: NA

Alternate protein names: Outer membrane protein 4; Polymorphic membrane protein 11 [H]

Number of amino acids: Translated: 518; Mature: 518

Protein sequence:

>518_residues
MKYPVYWFLVSSGLIASNTLSFAAAQQENLSSSDSYNGNTAGNATFTPKSTSNSDGTVYTCTGDVCIAYAGKTTPLSGSC
FSQSAGDLSFIGNGYSLCFESITATGKPGAIETTVNDKNVSISDFSMFNCSFCPPGVTGSGAIKSMGTTTFDKDVNILFQ
KNCSSTAGGAVNCKGLVLKGTSGIANFIENKSSDNGGAIESSGESFIENNTGIISFLGNSSEKQGGAIHSENSITVSNNN
SVVFSKNTTTGSSGSSGGAVYCNGNSQTPKLKFEGNKQLSFIENTSTTSGGAIYAKKLTINSGGTTVFSNNSTTNANPKG
GAICLDTSGECSLTAELGDIIFDGNKIITTGNSSSIKRNAIDLNTSGKFTKLSAKEGFGIYFYDPIADSGDNTTAIELNK
TENAINYTGKIVFSGETLSAQEKTQADNLTSTFKQPVTLSAGSLILKDGVTVEAKSFTQTQGSAVIMDVGTTLRTPSNDG
DAITLPNLSINIASLGGVLLLLLKSNLKQQVSKLPLQI

Sequences:

>Translated_518_residues
MKYPVYWFLVSSGLIASNTLSFAAAQQENLSSSDSYNGNTAGNATFTPKSTSNSDGTVYTCTGDVCIAYAGKTTPLSGSC
FSQSAGDLSFIGNGYSLCFESITATGKPGAIETTVNDKNVSISDFSMFNCSFCPPGVTGSGAIKSMGTTTFDKDVNILFQ
KNCSSTAGGAVNCKGLVLKGTSGIANFIENKSSDNGGAIESSGESFIENNTGIISFLGNSSEKQGGAIHSENSITVSNNN
SVVFSKNTTTGSSGSSGGAVYCNGNSQTPKLKFEGNKQLSFIENTSTTSGGAIYAKKLTINSGGTTVFSNNSTTNANPKG
GAICLDTSGECSLTAELGDIIFDGNKIITTGNSSSIKRNAIDLNTSGKFTKLSAKEGFGIYFYDPIADSGDNTTAIELNK
TENAINYTGKIVFSGETLSAQEKTQADNLTSTFKQPVTLSAGSLILKDGVTVEAKSFTQTQGSAVIMDVGTTLRTPSNDG
DAITLPNLSINIASLGGVLLLLLKSNLKQQVSKLPLQI
>Mature_518_residues
MKYPVYWFLVSSGLIASNTLSFAAAQQENLSSSDSYNGNTAGNATFTPKSTSNSDGTVYTCTGDVCIAYAGKTTPLSGSC
FSQSAGDLSFIGNGYSLCFESITATGKPGAIETTVNDKNVSISDFSMFNCSFCPPGVTGSGAIKSMGTTTFDKDVNILFQ
KNCSSTAGGAVNCKGLVLKGTSGIANFIENKSSDNGGAIESSGESFIENNTGIISFLGNSSEKQGGAIHSENSITVSNNN
SVVFSKNTTTGSSGSSGGAVYCNGNSQTPKLKFEGNKQLSFIENTSTTSGGAIYAKKLTINSGGTTVFSNNSTTNANPKG
GAICLDTSGECSLTAELGDIIFDGNKIITTGNSSSIKRNAIDLNTSGKFTKLSAKEGFGIYFYDPIADSGDNTTAIELNK
TENAINYTGKIVFSGETLSAQEKTQADNLTSTFKQPVTLSAGSLILKDGVTVEAKSFTQTQGSAVIMDVGTTLRTPSNDG
DAITLPNLSINIASLGGVLLLLLKSNLKQQVSKLPLQI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Secreted, cell wall. Cell outer membrane; Peripheral membrane protein; Extracellular side (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 autotransporter (TC 1.B.12) domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005546
- InterPro:   IPR003368
- InterPro:   IPR011427 [H]

Pfam domain/function: PF03797 Autotransporter; PF07548 ChlamPMP_M [H]

EC number: NA

Molecular weight: Translated: 53559; Mature: 53559

Theoretical pI: Translated: 4.96; Mature: 4.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYPVYWFLVSSGLIASNTLSFAAAQQENLSSSDSYNGNTAGNATFTPKSTSNSDGTVYT
CCCCEEEEEECCCEEEECCEEEEHHHHHCCCCCCCCCCCCCCCCEECCCCCCCCCCEEEE
CTGDVCIAYAGKTTPLSGSCFSQSAGDLSFIGNGYSLCFESITATGKPGAIETTVNDKNV
EECCEEEEECCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHCCCCCCEEEEEECCCCC
SISDFSMFNCSFCPPGVTGSGAIKSMGTTTFDKDVNILFQKNCSSTAGGAVNCKGLVLKG
EEECEEEEECCCCCCCCCCCCCHHHCCCEEECCCEEEEEECCCCCCCCCCEEEEEEEEEC
TSGIANFIENKSSDNGGAIESSGESFIENNTGIISFLGNSSEKQGGAIHSENSITVSNNN
CCHHHHHHHCCCCCCCCEECCCCCHHHCCCCCEEEEECCCCCCCCCEEECCCEEEEECCC
SVVFSKNTTTGSSGSSGGAVYCNGNSQTPKLKFEGNKQLSFIENTSTTSGGAIYAKKLTI
EEEEECCCCCCCCCCCCCEEEECCCCCCCEEEECCCCEEEEEECCCCCCCCEEEEEEEEE
NSGGTTVFSNNSTTNANPKGGAICLDTSGECSLTAELGDIIFDGNKIITTGNSSSIKRNA
ECCCCEEECCCCCCCCCCCCCEEEEECCCCEEEEEECCCEEECCCEEEECCCCCCEEEEE
IDLNTSGKFTKLSAKEGFGIYFYDPIADSGDNTTAIELNKTENAINYTGKIVFSGETLSA
EEECCCCCEEEEECCCCCEEEEECCCCCCCCCEEEEEEECCCCCEEEEEEEEECCCCCCC
QEKTQADNLTSTFKQPVTLSAGSLILKDGVTVEAKSFTQTQGSAVIMDVGTTLRTPSNDG
HHHHHHHHHHHHHCCCEEECCCCEEEECCCEEEECCCCCCCCCEEEEECCCEEECCCCCC
DAITLPNLSINIASLGGVLLLLLKSNLKQQVSKLPLQI
CEEEECCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKYPVYWFLVSSGLIASNTLSFAAAQQENLSSSDSYNGNTAGNATFTPKSTSNSDGTVYT
CCCCEEEEEECCCEEEECCEEEEHHHHHCCCCCCCCCCCCCCCCEECCCCCCCCCCEEEE
CTGDVCIAYAGKTTPLSGSCFSQSAGDLSFIGNGYSLCFESITATGKPGAIETTVNDKNV
EECCEEEEECCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHCCCCCCEEEEEECCCCC
SISDFSMFNCSFCPPGVTGSGAIKSMGTTTFDKDVNILFQKNCSSTAGGAVNCKGLVLKG
EEECEEEEECCCCCCCCCCCCCHHHCCCEEECCCEEEEEECCCCCCCCCCEEEEEEEEEC
TSGIANFIENKSSDNGGAIESSGESFIENNTGIISFLGNSSEKQGGAIHSENSITVSNNN
CCHHHHHHHCCCCCCCCEECCCCCHHHCCCCCEEEEECCCCCCCCCEEECCCEEEEECCC
SVVFSKNTTTGSSGSSGGAVYCNGNSQTPKLKFEGNKQLSFIENTSTTSGGAIYAKKLTI
EEEEECCCCCCCCCCCCCEEEECCCCCCCEEEECCCCEEEEEECCCCCCCCEEEEEEEEE
NSGGTTVFSNNSTTNANPKGGAICLDTSGECSLTAELGDIIFDGNKIITTGNSSSIKRNA
ECCCCEEECCCCCCCCCCCCCEEEEECCCCEEEEEECCCEEECCCEEEECCCCCCEEEEE
IDLNTSGKFTKLSAKEGFGIYFYDPIADSGDNTTAIELNKTENAINYTGKIVFSGETLSA
EEECCCCCEEEEECCCCCEEEEECCCCCCCCCEEEEEEECCCCCEEEEEEEEECCCCCCC
QEKTQADNLTSTFKQPVTLSAGSLILKDGVTVEAKSFTQTQGSAVIMDVGTTLRTPSNDG
HHHHHHHHHHHHHCCCEEECCCCEEEECCCEEEECCCCCCCCCEEEEECCCEEECCCCCC
DAITLPNLSINIASLGGVLLLLLKSNLKQQVSKLPLQI
CEEEECCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9864239; 10539856; 10192388; 10684935; 10871362 [H]