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The map label for this gene is pmp06 [H]

Identifier: 89898531

GI number: 89898531

Start: 839190

End: 840548

Strand: Direct

Name: pmp06 [H]

Synonym: CF0724

Alternate gene names: 89898531

Gene position: 839190-840548 (Clockwise)

Preceding gene: 89898530

Following gene: 89898532

Centisome position: 71.96

GC content: 43.19

Gene sequence:

>1359_bases
ATTGCCCAATCTGAGCATAAACATCGCCTCGCTGGGGGGGGTACTCCTTCTTCTGCTAAAATCCAATCTCAAACAACAGG
TAAGCAAGTTACCGTTACAGATATAAGTTACGTAGATGAAGACGGACATGCTTACGAATATCCTGTTTTTTCTAAAACTC
GCGATTTTGCTTCCGCTATAACTCTCCTGGCTGCTAATGGAACCCAAGTAACCGCACCCACTCACCCTGCAACTCCTCTC
ACCCCAGCCCCCCACTATGGCTATCAAGGAAATTGGTCCATCTCTTGGAAACAAGGTACTGGAACCAATGAACAGAATGC
CACTTTAAGTTGGAAACAAACCGGTTATCTTCCTAACCCCGAACGTCAAGGACCTTTAGTTCCTAACACTCTTTGGGGAT
CTTTCTCCGATATAAGAGCTATCCAAAATCTTATGGATGTAAACGTTAATGGTGCGGATTATCAAAGAGGCTTCTGGGTA
TCCGGATTAGCAAACTTTTTACATAAAAGTGGATCAGCAACCAAACGTAAGTTCCGTCACAATAGTGCGGGATATGTTCT
AGGGGTATTCGCGCATACTCCTGCCGATGACATCTTCTCCGCCGCTTTCTGCCAATTGTTTGGAAAAGATAAGGATTACT
TAGTAGCCAAAAACAATGCGCATATCTACGCAGGTTCTATCTATTACCAACATACCTCCTTCTGGAGTGCTTGGGAGAAC
CTACTACAAAACACTATCGGGGCCCAAGCTCCTTTAGTCCTCAACGCACAACTCACTTATAGTCACACTTCAAACGATAT
GAAGACCAACATGACTACTAAGTATGCTCCCCGTAATGTCGTTTACCCAGAGATCAAGGGTGATTGGGGTAATGATTGTT
TCGGCATAGAACTCGGAGCTGTTGTGCCTATCGAGTCTCAATACTCTTCCCTTTTCGATATATATTCCCCATTCCTAAAG
TTCCAGCTTGTTCATGCTCATCAAGAAGACTTTAAGGAAAACAGTAGCACGGAAGGAAGATACTTTGAGAGTAGTAATCT
CACAAACTTATCTATGCCTATCGGTGTGAAGTTTGAGAGATTTTCTGAAAATGACAGGGCTTCTTACAACCTGACACTGG
CTTATGCCCCAGACATTGCAAGAAGTAATCCTGATTGTGCCTCGTCTCTATTAGTTAGCCCAACCACCGCTGTTTGGTTA
ACTAAAGCTTCTAACCTAGCTAGACAAGCTTTCATTGTAAGAGCGGGAAATTATCTTTCCTTATCTTCTAATTTTGAAAT
CTTCAGTCAGTTTGGTTTCGAGCTCAGAGGCTCTTCTCGAACCTATAACGTAGATCTCGGATCTAAAATCCAGTTCTAG

Upstream 100 bases:

>100_bases
CTGTAGAAGCCAAGTCCTTTACTCAAACTCAAGGATCCGCGGTTATTATGGATGTGGGCACCACTCTACGGACTCCGTCC
AATGACGGTGATGCCATTAC

Downstream 100 bases:

>100_bases
TCTCATCCACCTCCCCTGCCCCATCCCGGGGCAGGGCCTTTCATTCCCTTCAATCTCATTGACTTTTAATTATTTTTGTG
ATCGTCTTAAGCCATCTCAA

Product: polymorphic outer membrane protein

Products: NA

Alternate protein names: Outer membrane protein 5; Polymorphic membrane protein 10 [H]

Number of amino acids: Translated: 452; Mature: 451

Protein sequence:

>452_residues
MAQSEHKHRLAGGGTPSSAKIQSQTTGKQVTVTDISYVDEDGHAYEYPVFSKTRDFASAITLLAANGTQVTAPTHPATPL
TPAPHYGYQGNWSISWKQGTGTNEQNATLSWKQTGYLPNPERQGPLVPNTLWGSFSDIRAIQNLMDVNVNGADYQRGFWV
SGLANFLHKSGSATKRKFRHNSAGYVLGVFAHTPADDIFSAAFCQLFGKDKDYLVAKNNAHIYAGSIYYQHTSFWSAWEN
LLQNTIGAQAPLVLNAQLTYSHTSNDMKTNMTTKYAPRNVVYPEIKGDWGNDCFGIELGAVVPIESQYSSLFDIYSPFLK
FQLVHAHQEDFKENSSTEGRYFESSNLTNLSMPIGVKFERFSENDRASYNLTLAYAPDIARSNPDCASSLLVSPTTAVWL
TKASNLARQAFIVRAGNYLSLSSNFEIFSQFGFELRGSSRTYNVDLGSKIQF

Sequences:

>Translated_452_residues
MAQSEHKHRLAGGGTPSSAKIQSQTTGKQVTVTDISYVDEDGHAYEYPVFSKTRDFASAITLLAANGTQVTAPTHPATPL
TPAPHYGYQGNWSISWKQGTGTNEQNATLSWKQTGYLPNPERQGPLVPNTLWGSFSDIRAIQNLMDVNVNGADYQRGFWV
SGLANFLHKSGSATKRKFRHNSAGYVLGVFAHTPADDIFSAAFCQLFGKDKDYLVAKNNAHIYAGSIYYQHTSFWSAWEN
LLQNTIGAQAPLVLNAQLTYSHTSNDMKTNMTTKYAPRNVVYPEIKGDWGNDCFGIELGAVVPIESQYSSLFDIYSPFLK
FQLVHAHQEDFKENSSTEGRYFESSNLTNLSMPIGVKFERFSENDRASYNLTLAYAPDIARSNPDCASSLLVSPTTAVWL
TKASNLARQAFIVRAGNYLSLSSNFEIFSQFGFELRGSSRTYNVDLGSKIQF
>Mature_451_residues
AQSEHKHRLAGGGTPSSAKIQSQTTGKQVTVTDISYVDEDGHAYEYPVFSKTRDFASAITLLAANGTQVTAPTHPATPLT
PAPHYGYQGNWSISWKQGTGTNEQNATLSWKQTGYLPNPERQGPLVPNTLWGSFSDIRAIQNLMDVNVNGADYQRGFWVS
GLANFLHKSGSATKRKFRHNSAGYVLGVFAHTPADDIFSAAFCQLFGKDKDYLVAKNNAHIYAGSIYYQHTSFWSAWENL
LQNTIGAQAPLVLNAQLTYSHTSNDMKTNMTTKYAPRNVVYPEIKGDWGNDCFGIELGAVVPIESQYSSLFDIYSPFLKF
QLVHAHQEDFKENSSTEGRYFESSNLTNLSMPIGVKFERFSENDRASYNLTLAYAPDIARSNPDCASSLLVSPTTAVWLT
KASNLARQAFIVRAGNYLSLSSNFEIFSQFGFELRGSSRTYNVDLGSKIQF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Secreted, cell wall. Cell outer membrane; Peripheral membrane protein; Extracellular side (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 autotransporter (TC 1.B.12) domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005546
- InterPro:   IPR003368
- InterPro:   IPR006315
- InterPro:   IPR006626
- InterPro:   IPR011427 [H]

Pfam domain/function: PF03797 Autotransporter; PF02415 Chlam_PMP; PF07548 ChlamPMP_M [H]

EC number: NA

Molecular weight: Translated: 50066; Mature: 49935

Theoretical pI: Translated: 7.44; Mature: 7.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQSEHKHRLAGGGTPSSAKIQSQTTGKQVTVTDISYVDEDGHAYEYPVFSKTRDFASAI
CCCCCCCHHHCCCCCCCCCEEECCCCCCEEEEEEEEEECCCCCEEECCCCCCHHHHHHEE
TLLAANGTQVTAPTHPATPLTPAPHYGYQGNWSISWKQGTGTNEQNATLSWKQTGYLPNP
EEEEECCCEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEECCCCCCCCC
ERQGPLVPNTLWGSFSDIRAIQNLMDVNVNGADYQRGFWVSGLANFLHKSGSATKRKFRH
CCCCCCCCCHHCCCHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHHHHCCCCHHHHHHHC
NSAGYVLGVFAHTPADDIFSAAFCQLFGKDKDYLVAKNNAHIYAGSIYYQHTSFWSAWEN
CCCCEEEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCEEEEEEEEEEECHHHHHHHH
LLQNTIGAQAPLVLNAQLTYSHTSNDMKTNMTTKYAPRNVVYPEIKGDWGNDCFGIELGA
HHHHHHCCCCCEEEEEEEEEEECCCCCCCCCEEEECCCCEECCCCCCCCCCCEEEEEECE
VVPIESQYSSLFDIYSPFLKFQLVHAHQEDFKENSSTEGRYFESSNLTNLSMPIGVKFER
EEECHHHHHHHHHHHHHHHHEEHHHHHHHHHHCCCCCCCCEEECCCCCEEECCCCEEEEE
FSENDRASYNLTLAYAPDIARSNPDCASSLLVSPTTAVWLTKASNLARQAFIVRAGNYLS
CCCCCCCEEEEEEEECCCCCCCCCCHHHHEECCCCEEEEEECHHHHHHEEEEEECCCEEE
LSSNFEIFSQFGFELRGSSRTYNVDLGSKIQF
ECCCCHHHHHCCEEEECCCEEEEECCCCCCCC
>Mature Secondary Structure 
AQSEHKHRLAGGGTPSSAKIQSQTTGKQVTVTDISYVDEDGHAYEYPVFSKTRDFASAI
CCCCCCHHHCCCCCCCCCEEECCCCCCEEEEEEEEEECCCCCEEECCCCCCHHHHHHEE
TLLAANGTQVTAPTHPATPLTPAPHYGYQGNWSISWKQGTGTNEQNATLSWKQTGYLPNP
EEEEECCCEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEECCCCCCCCC
ERQGPLVPNTLWGSFSDIRAIQNLMDVNVNGADYQRGFWVSGLANFLHKSGSATKRKFRH
CCCCCCCCCHHCCCHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHHHHCCCCHHHHHHHC
NSAGYVLGVFAHTPADDIFSAAFCQLFGKDKDYLVAKNNAHIYAGSIYYQHTSFWSAWEN
CCCCEEEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCEEEEEEEEEEECHHHHHHHH
LLQNTIGAQAPLVLNAQLTYSHTSNDMKTNMTTKYAPRNVVYPEIKGDWGNDCFGIELGA
HHHHHHCCCCCEEEEEEEEEEECCCCCCCCCEEEECCCCEECCCCCCCCCCCEEEEEECE
VVPIESQYSSLFDIYSPFLKFQLVHAHQEDFKENSSTEGRYFESSNLTNLSMPIGVKFER
EEECHHHHHHHHHHHHHHHHEEHHHHHHHHHHCCCCCCCCEEECCCCCEEECCCCEEEEE
FSENDRASYNLTLAYAPDIARSNPDCASSLLVSPTTAVWLTKASNLARQAFIVRAGNYLS
CCCCCCCEEEEEEEECCCCCCCCCCHHHHEECCCCEEEEEECHHHHHHEEEEEECCCEEE
LSSNFEIFSQFGFELRGSSRTYNVDLGSKIQF
ECCCCHHHHHCCEEEECCCEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10539856; 10684935; 10871362; 9864239 [H]