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The map label for this gene is pmp05 [H]

Identifier: 89898529

GI number: 89898529

Start: 835022

End: 837622

Strand: Direct

Name: pmp05 [H]

Synonym: CF0722

Alternate gene names: 89898529

Gene position: 835022-837622 (Clockwise)

Preceding gene: 89898528

Following gene: 89898530

Centisome position: 71.6

GC content: 41.83

Gene sequence:

>2601_bases
ATGAAACATCCAGTTTACTGGTTCCTAGTATCTTCGGGGTTGCTAGCCTCGACCTCATTGAGCTTTGCTCAAGCAGTTAA
AGAGAATTTAAATCCCTCTCATAGTTATGATGGAAATACAACAACAGGTGCATTCCAAACTAAAGAAACATCAACAGGCG
CTGAATATACTTGCGAAGGGAATGTATGCATTACTTATGCAGGGAAAGGTACTGCATTAACAAAGAGTTGTTTCTCAGAT
ACAACTGAAAACCTGACCTTTATAGGGAATAACTATTCTCTTTGTTTCGATAATATTAATACAACAGCTAAACCTGCTGC
TATTGAAGTAACACAAGCGGATAAAACCTTATCCATTTCAGGTTTTTCATCATTTTCATGCTCTTATTGCCCTCCAGGAA
CTACTGGACAAGGCGCTATTAAGTCAGGAGGAGCGGCTACTTTCGACAACAACTCTAACGTACTTTTCAATAGAAATTGT
TCAACGGCAGAAGGCGGCGCAATTAACTGCAAAAGTCTAACACTTAAAAATTCATCAGGATGTGCAAATTTTATACAAAA
TTCATCCGATAAAAAGGGTGGGGCTATTTACTGTAGTGATGGTGAACTCCGATTAGAAAATAACGATCAGATTCTTTTCT
CTGGAAATACTTCCAAAGAAGGTGGAGGAGCTATTTATACAAAAAAGTTTATGCTAACCTCTGGCGGGACCACAATATTT
TCTAATAATTCCGTAACTCATAATACTCCAAAGGGTGGGGCCATCTCTTTAGCAGATGCAGATAGTACATGCAGTCTATC
TGCTGATCGTGGCGACATTATTTTCGATGGGAATAAAGTAATAACAAGTGGGGGTAACACGACAACGAAAAGAAATTCTA
TAGATCTAGGTTCTGGAGGAAAGTTCACTCAATTAAGAGCAAAAGATGGTTTTGGCATCTTCTTCTATGACCCGATTGCT
AATAATGGGGATACCGCCACAGAATTAGAAATCAATAAAACTGAAGGAACCTCAACCTATTCAGGTCGTATTGTCTTTTC
TGGAGAAAAGCTAACCGAAGATGAAAGAAAAGTTGCGGACAATTTGAAATCCACTTTCAAACAACCCATCAAAATAGTGT
CCGGGTCTCTTGTACTTAGAGATGGAGCAACAGTAGAAGCAAAGAAAGTCTCACAAACCGGTGGCGCTGTTGTGATGGAT
TTGGGCACTAGCCTAACCACAGCCACTACGGGTGAAGACATCACTTTAAGTAATCTCGTCATCAACATCGCCTCATTGGG
GGGGGGGGGTCCTTCTCCGGCACAAATCTCAGCTGGTGCAACCAATAAAAGCGTTACAATCCAAGCTGTTAATCTAGTCG
ACTCTGATGGCAATGCCTACGAATACCCCGTATTCTCTACCACAAAACCCTTCTCAGCAATAGAAGCTAAAGCTAATGGC
ACTGGAACAGCCACAACACCAACTGATAAACTAACTAACTATGTCCCATCCGCTCATTATGGCTATCAAGGTGTCTGGAC
AGAAACCTGGACACAAGGAGCAACTACGGCCACACAAACTGCCACTCTAAACTGGAAACAAACCGGCTATAATCCTAACC
CCGAACGTCAAGGCCCCTTAGTTCCTAATACCTTGTGGGGATCTTTCTCAGATGTACGCGCTATTCAGAATCTTATGGAT
ATTAGCGTCAATGGTGCGGATTATCAAAGAGGCTTCTGGGTATCTGGATTAGCAAACTTTTTACATAAAAGTGGATCAGC
AACCAAACGTAAGTTCCGTCACAATAGTGCAGGATATGTTCTAGGGGTATTCGCGCATACTCCTTCTGATGATATCTTCT
CCGCCGCCTTCTGCCAGTTGTTTGGAAAAGATAAGGATTATTTAGTCTCTAAAAACAATGCGCATATCTACGCGGGTTCC
GTCTATTACCAGCACACCTCCTTCTGGAACGCTTGGGATAGACTGCTACAAAATACTCTCGGCGCGCAAGCTCCGTTAGT
ACTCAATGCACAGTTAACTTATAGTCACACGTCTAACGATATGAAGACCAATATGACTACTAAATACGCTCCTCACAATG
TCGTTTACCCAGAGATCAAGGGTGATTGGGGTAATGATTGTTTTGGAGTAGAACTCGGAGCTACTGTGCCTATTGAATCT
CCATATTCTTCCTTATTTGATATGTACTCTCCTTTCTTGAAATTCCAACTTGTTCATGCTCATCAAGAGGACTTTAAAGA
AAACAGCAGCGCTGAAGGAAGATACTTTGAGAGCAGCAATCTCACAAACCTCTCTATGCCTATCGGCGTGAAGTTTGAGA
GATTCTCTGACAATGATAATGCTTCTTACAACTTAACTTTGGCTTATGCTCCGGATCTTGCAAGAAGCAACCCCGATTGT
ACTACGTCTCTATTAGTGAGCCCAACCACAGCTGTTTGGTTAACTAAGGCTTCTAACCTAGCCCGACAAGCTTTCATTGT
AAGAGCAGGAAATTATCTATCCCTGTCATCCAACTTTGAAATCTTCAGTCAGTTTGGTTTCGAGCTCAGAGGCTCTTCTC
GAACCTATAACGTGGATCTCGGATCTAAAATCCAGTTCTAG

Upstream 100 bases:

>100_bases
TCTGGGCAGGGCTTCTTCTTTTCAGAACTCCCAATCCCCTTGACTTTTAATCATTTTTATGATCGTTTAAGGCTATCTCA
AATCACCCAGAGCATGAAAT

Downstream 100 bases:

>100_bases
TCTCATCCACCTCCCCTGCCCCATCCCGGGGCAGGGCCTCCCCACCCATTCCCCTTGACTTTTAAATATTTTTGTGATCG
TTTAAGACTATCTCAAATCA

Product: polymorphic outer membrane protein

Products: NA

Alternate protein names: Outer membrane protein 5; Polymorphic membrane protein 10 [H]

Number of amino acids: Translated: 866; Mature: 866

Protein sequence:

>866_residues
MKHPVYWFLVSSGLLASTSLSFAQAVKENLNPSHSYDGNTTTGAFQTKETSTGAEYTCEGNVCITYAGKGTALTKSCFSD
TTENLTFIGNNYSLCFDNINTTAKPAAIEVTQADKTLSISGFSSFSCSYCPPGTTGQGAIKSGGAATFDNNSNVLFNRNC
STAEGGAINCKSLTLKNSSGCANFIQNSSDKKGGAIYCSDGELRLENNDQILFSGNTSKEGGGAIYTKKFMLTSGGTTIF
SNNSVTHNTPKGGAISLADADSTCSLSADRGDIIFDGNKVITSGGNTTTKRNSIDLGSGGKFTQLRAKDGFGIFFYDPIA
NNGDTATELEINKTEGTSTYSGRIVFSGEKLTEDERKVADNLKSTFKQPIKIVSGSLVLRDGATVEAKKVSQTGGAVVMD
LGTSLTTATTGEDITLSNLVINIASLGGGGPSPAQISAGATNKSVTIQAVNLVDSDGNAYEYPVFSTTKPFSAIEAKANG
TGTATTPTDKLTNYVPSAHYGYQGVWTETWTQGATTATQTATLNWKQTGYNPNPERQGPLVPNTLWGSFSDVRAIQNLMD
ISVNGADYQRGFWVSGLANFLHKSGSATKRKFRHNSAGYVLGVFAHTPSDDIFSAAFCQLFGKDKDYLVSKNNAHIYAGS
VYYQHTSFWNAWDRLLQNTLGAQAPLVLNAQLTYSHTSNDMKTNMTTKYAPHNVVYPEIKGDWGNDCFGVELGATVPIES
PYSSLFDMYSPFLKFQLVHAHQEDFKENSSAEGRYFESSNLTNLSMPIGVKFERFSDNDNASYNLTLAYAPDLARSNPDC
TTSLLVSPTTAVWLTKASNLARQAFIVRAGNYLSLSSNFEIFSQFGFELRGSSRTYNVDLGSKIQF

Sequences:

>Translated_866_residues
MKHPVYWFLVSSGLLASTSLSFAQAVKENLNPSHSYDGNTTTGAFQTKETSTGAEYTCEGNVCITYAGKGTALTKSCFSD
TTENLTFIGNNYSLCFDNINTTAKPAAIEVTQADKTLSISGFSSFSCSYCPPGTTGQGAIKSGGAATFDNNSNVLFNRNC
STAEGGAINCKSLTLKNSSGCANFIQNSSDKKGGAIYCSDGELRLENNDQILFSGNTSKEGGGAIYTKKFMLTSGGTTIF
SNNSVTHNTPKGGAISLADADSTCSLSADRGDIIFDGNKVITSGGNTTTKRNSIDLGSGGKFTQLRAKDGFGIFFYDPIA
NNGDTATELEINKTEGTSTYSGRIVFSGEKLTEDERKVADNLKSTFKQPIKIVSGSLVLRDGATVEAKKVSQTGGAVVMD
LGTSLTTATTGEDITLSNLVINIASLGGGGPSPAQISAGATNKSVTIQAVNLVDSDGNAYEYPVFSTTKPFSAIEAKANG
TGTATTPTDKLTNYVPSAHYGYQGVWTETWTQGATTATQTATLNWKQTGYNPNPERQGPLVPNTLWGSFSDVRAIQNLMD
ISVNGADYQRGFWVSGLANFLHKSGSATKRKFRHNSAGYVLGVFAHTPSDDIFSAAFCQLFGKDKDYLVSKNNAHIYAGS
VYYQHTSFWNAWDRLLQNTLGAQAPLVLNAQLTYSHTSNDMKTNMTTKYAPHNVVYPEIKGDWGNDCFGVELGATVPIES
PYSSLFDMYSPFLKFQLVHAHQEDFKENSSAEGRYFESSNLTNLSMPIGVKFERFSDNDNASYNLTLAYAPDLARSNPDC
TTSLLVSPTTAVWLTKASNLARQAFIVRAGNYLSLSSNFEIFSQFGFELRGSSRTYNVDLGSKIQF
>Mature_866_residues
MKHPVYWFLVSSGLLASTSLSFAQAVKENLNPSHSYDGNTTTGAFQTKETSTGAEYTCEGNVCITYAGKGTALTKSCFSD
TTENLTFIGNNYSLCFDNINTTAKPAAIEVTQADKTLSISGFSSFSCSYCPPGTTGQGAIKSGGAATFDNNSNVLFNRNC
STAEGGAINCKSLTLKNSSGCANFIQNSSDKKGGAIYCSDGELRLENNDQILFSGNTSKEGGGAIYTKKFMLTSGGTTIF
SNNSVTHNTPKGGAISLADADSTCSLSADRGDIIFDGNKVITSGGNTTTKRNSIDLGSGGKFTQLRAKDGFGIFFYDPIA
NNGDTATELEINKTEGTSTYSGRIVFSGEKLTEDERKVADNLKSTFKQPIKIVSGSLVLRDGATVEAKKVSQTGGAVVMD
LGTSLTTATTGEDITLSNLVINIASLGGGGPSPAQISAGATNKSVTIQAVNLVDSDGNAYEYPVFSTTKPFSAIEAKANG
TGTATTPTDKLTNYVPSAHYGYQGVWTETWTQGATTATQTATLNWKQTGYNPNPERQGPLVPNTLWGSFSDVRAIQNLMD
ISVNGADYQRGFWVSGLANFLHKSGSATKRKFRHNSAGYVLGVFAHTPSDDIFSAAFCQLFGKDKDYLVSKNNAHIYAGS
VYYQHTSFWNAWDRLLQNTLGAQAPLVLNAQLTYSHTSNDMKTNMTTKYAPHNVVYPEIKGDWGNDCFGVELGATVPIES
PYSSLFDMYSPFLKFQLVHAHQEDFKENSSAEGRYFESSNLTNLSMPIGVKFERFSDNDNASYNLTLAYAPDLARSNPDC
TTSLLVSPTTAVWLTKASNLARQAFIVRAGNYLSLSSNFEIFSQFGFELRGSSRTYNVDLGSKIQF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Secreted, cell wall. Cell outer membrane; Peripheral membrane protein; Extracellular side (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 autotransporter (TC 1.B.12) domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005546
- InterPro:   IPR003368
- InterPro:   IPR006315
- InterPro:   IPR006626
- InterPro:   IPR011427 [H]

Pfam domain/function: PF03797 Autotransporter; PF02415 Chlam_PMP; PF07548 ChlamPMP_M [H]

EC number: NA

Molecular weight: Translated: 92891; Mature: 92891

Theoretical pI: Translated: 6.45; Mature: 6.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKHPVYWFLVSSGLLASTSLSFAQAVKENLNPSHSYDGNTTTGAFQTKETSTGAEYTCEG
CCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCEEEECC
NVCITYAGKGTALTKSCFSDTTENLTFIGNNYSLCFDNINTTAKPAAIEVTQADKTLSIS
CEEEEECCCCCCHHHHHHCCCCCCEEEEECCEEEEEECCCCCCCCCEEEEEECCCEEEEC
GFSSFSCSYCPPGTTGQGAIKSGGAATFDNNSNVLFNRNCSTAEGGAINCKSLTLKNSSG
CCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEECCCCCCCCCEEEEEEEEEECCCC
CANFIQNSSDKKGGAIYCSDGELRLENNDQILFSGNTSKEGGGAIYTKKFMLTSGGTTIF
HHHHHCCCCCCCCCEEEECCCEEEEECCCEEEEECCCCCCCCCEEEEEEEEEECCCEEEE
SNNSVTHNTPKGGAISLADADSTCSLSADRGDIIFDGNKVITSGGNTTTKRNSIDLGSGG
ECCCEECCCCCCCEEEEECCCCCEEEECCCCCEEECCCEEEECCCCCCCCCCCEECCCCC
KFTQLRAKDGFGIFFYDPIANNGDTATELEINKTEGTSTYSGRIVFSGEKLTEDERKVAD
CEEEEEECCCCEEEEECCCCCCCCCEEEEEEECCCCCCEECCEEEECCCCCCCHHHHHHH
NLKSTFKQPIKIVSGSLVLRDGATVEAKKVSQTGGAVVMDLGTSLTTATTGEDITLSNLV
HHHHHHHHHHHHHCCCEEEECCCEEEEEEHHCCCCEEEEECCCCEEEECCCCCEEEHHEE
INIASLGGGGPSPAQISAGATNKSVTIQAVNLVDSDGNAYEYPVFSTTKPFSAIEAKANG
EEEEECCCCCCCCCEEECCCCCCEEEEEEEEEEECCCCEEECCCCCCCCCCHHEEECCCC
TGTATTPTDKLTNYVPSAHYGYQGVWTETWTQGATTATQTATLNWKQTGYNPNPERQGPL
CCCCCCCHHHHHHCCCCCCCCCCEEEHHHCCCCCCCEEEEEEEEEHCCCCCCCCCCCCCC
VPNTLWGSFSDVRAIQNLMDISVNGADYQRGFWVSGLANFLHKSGSATKRKFRHNSAGYV
CCCHHCCCHHHHHHHHHHHHEECCCCCCCCCEEHHHHHHHHHCCCCHHHHHHHCCCCCEE
LGVFAHTPSDDIFSAAFCQLFGKDKDYLVSKNNAHIYAGSVYYQHTSFWNAWDRLLQNTL
EEEEEECCCCHHHHHHHHHHHCCCCCEEEECCCCEEEEEEEEEEECHHHHHHHHHHHHHH
GAQAPLVLNAQLTYSHTSNDMKTNMTTKYAPHNVVYPEIKGDWGNDCFGVELGATVPIES
CCCCCEEEEEEEEEEECCCCCCCCCEEEECCCCEEECCCCCCCCCCEEEEEECCCCCCCC
PYSSLFDMYSPFLKFQLVHAHQEDFKENSSAEGRYFESSNLTNLSMPIGVKFERFSDNDN
HHHHHHHHHHHHHEEEEEHHHHHHHHCCCCCCCCEEECCCCEEEECCCCEEEEEECCCCC
ASYNLTLAYAPDLARSNPDCTTSLLVSPTTAVWLTKASNLARQAFIVRAGNYLSLSSNFE
CEEEEEEEECCCHHCCCCCCCEEEEECCCEEEEEECCHHHHEEEEEEECCCEEEECCCCH
IFSQFGFELRGSSRTYNVDLGSKIQF
HHHHCCEEEECCCEEEEECCCCEECC
>Mature Secondary Structure
MKHPVYWFLVSSGLLASTSLSFAQAVKENLNPSHSYDGNTTTGAFQTKETSTGAEYTCEG
CCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCEEEECC
NVCITYAGKGTALTKSCFSDTTENLTFIGNNYSLCFDNINTTAKPAAIEVTQADKTLSIS
CEEEEECCCCCCHHHHHHCCCCCCEEEEECCEEEEEECCCCCCCCCEEEEEECCCEEEEC
GFSSFSCSYCPPGTTGQGAIKSGGAATFDNNSNVLFNRNCSTAEGGAINCKSLTLKNSSG
CCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEECCCCCCCCCEEEEEEEEEECCCC
CANFIQNSSDKKGGAIYCSDGELRLENNDQILFSGNTSKEGGGAIYTKKFMLTSGGTTIF
HHHHHCCCCCCCCCEEEECCCEEEEECCCEEEEECCCCCCCCCEEEEEEEEEECCCEEEE
SNNSVTHNTPKGGAISLADADSTCSLSADRGDIIFDGNKVITSGGNTTTKRNSIDLGSGG
ECCCEECCCCCCCEEEEECCCCCEEEECCCCCEEECCCEEEECCCCCCCCCCCEECCCCC
KFTQLRAKDGFGIFFYDPIANNGDTATELEINKTEGTSTYSGRIVFSGEKLTEDERKVAD
CEEEEEECCCCEEEEECCCCCCCCCEEEEEEECCCCCCEECCEEEECCCCCCCHHHHHHH
NLKSTFKQPIKIVSGSLVLRDGATVEAKKVSQTGGAVVMDLGTSLTTATTGEDITLSNLV
HHHHHHHHHHHHHCCCEEEECCCEEEEEEHHCCCCEEEEECCCCEEEECCCCCEEEHHEE
INIASLGGGGPSPAQISAGATNKSVTIQAVNLVDSDGNAYEYPVFSTTKPFSAIEAKANG
EEEEECCCCCCCCCEEECCCCCCEEEEEEEEEEECCCCEEECCCCCCCCCCHHEEECCCC
TGTATTPTDKLTNYVPSAHYGYQGVWTETWTQGATTATQTATLNWKQTGYNPNPERQGPL
CCCCCCCHHHHHHCCCCCCCCCCEEEHHHCCCCCCCEEEEEEEEEHCCCCCCCCCCCCCC
VPNTLWGSFSDVRAIQNLMDISVNGADYQRGFWVSGLANFLHKSGSATKRKFRHNSAGYV
CCCHHCCCHHHHHHHHHHHHEECCCCCCCCCEEHHHHHHHHHCCCCHHHHHHHCCCCCEE
LGVFAHTPSDDIFSAAFCQLFGKDKDYLVSKNNAHIYAGSVYYQHTSFWNAWDRLLQNTL
EEEEEECCCCHHHHHHHHHHHCCCCCEEEECCCCEEEEEEEEEEECHHHHHHHHHHHHHH
GAQAPLVLNAQLTYSHTSNDMKTNMTTKYAPHNVVYPEIKGDWGNDCFGVELGATVPIES
CCCCCEEEEEEEEEEECCCCCCCCCEEEECCCCEEECCCCCCCCCCEEEEEECCCCCCCC
PYSSLFDMYSPFLKFQLVHAHQEDFKENSSAEGRYFESSNLTNLSMPIGVKFERFSDNDN
HHHHHHHHHHHHHEEEEEHHHHHHHHCCCCCCCCEEECCCCEEEECCCCEEEEEECCCCC
ASYNLTLAYAPDLARSNPDCTTSLLVSPTTAVWLTKASNLARQAFIVRAGNYLSLSSNFE
CEEEEEEEECCCHHCCCCCCCEEEEECCCEEEEEECCHHHHEEEEEEECCCEEEECCCCH
IFSQFGFELRGSSRTYNVDLGSKIQF
HHHHCCEEEECCCEEEEECCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10539856; 10684935; 10871362; 9864239 [H]