| Definition | Chlamydophila felis Fe/C-56, complete genome. |
|---|---|
| Accession | NC_007899 |
| Length | 1,166,239 |
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The map label for this gene is pmp04 [H]
Identifier: 89898528
GI number: 89898528
Start: 832123
End: 834903
Strand: Direct
Name: pmp04 [H]
Synonym: CF0721
Alternate gene names: 89898528
Gene position: 832123-834903 (Clockwise)
Preceding gene: 89898527
Following gene: 89898529
Centisome position: 71.35
GC content: 41.42
Gene sequence:
>2781_bases ATGAGGCCTTCTTTATATAAGATTTTAATATCGTCATCTCTGACGATACCAATATCTTTTCACTTCTCGCAATTACATGC AGAAGTGGCTTTAACTCAAGAATCTGTTCTCAACGCAAATGGAGTATTCAGCCCGCTATCTACAAGCACTGCGGGAGGAA CCACTTATAACGTTGAGAGCGATATTTCTATTGTAGATGCCGGGCAAGCTACGGCTCTTGCTTCTGCAGCTTTCGTTCAA ACTGCTGCTGATCTTACTTTCAAAGGAAATGGGCATAGCCTATCCCTAGCAAACATTAATTCCGGAGCTAATACTACGGG AATTAACGTTTCTACTGCAGATAAAACTCTTACTCTAACAGATTTTTCTAAATTGAGCTTTACGAAGTGTCCGTTTTTTA CAACGAATACGGGAAAGGGAGCGGTACAATCTGGAGGAGCGTTAAACTTAGCGAATAACGCGAGCATCCTTTTTGATCAG AACCATTCCGCAGAAAATGGTGGAGCGACCTCTTGCAAAGCTTTGTCCCTAACTGGCTCAATCAAAGAAATCAGCTTCAC CACTAACTCTAGCGCGAAAAAAGGTGGTGCGATTGCCACTACAGGAGTTGCTAACCTTTCAGACAACCCGGGAACCGTAG TATTTTCTGGAAACACTGCCGTTAATTCTGGAGGAGCAGTATATGCAGAAGGTGCTACGACTATCGCAGGAAACGGCCGT GTTGTTTTTAGCAACAATAGCGTTTCTGGATCTAACGATGGCTGCGGTGGTGCTATCCATTGTAGCAAATCAGGTACGAC ACCGATCCTTGCTATAAGAGATAACAAAGTTCTGATTTTTAATGAAAATACTTCTGCAGAAAAAGGCGGGGCTATTTACG CAGATAAGCTCAATCTCTCCTCTGGCGGACTAACAATATTTACAAAGAACAAAGCGACTAATGCCACTCCTAAAGGTGGA GCTATTGGGATTTCTAGTAGCGGAGAGTGTAGTTTAACAGCTGAACTCGGGAATATTACTTTTGAAAATAACCTTATAGC AACCGCAAACAATTCTTCGATAAAAAGAAATGCTATTACTATTGAAAGCAATGGTAAATTCACTAATCTACGCGCAGCCT CTGGAAAGTCTATTACTTTCTATGATCCTATTGTTTGCGAAGGCGCTTGCGCCGATCTCCTTACCTTAAATAAAGCCGAG GGCACTAAAGTCTATAACGGGAAAATTATCTTTTCTGGGGAACAGCTTACTCCCGAGCAAACAGCGATTGTTGATAACTC TAAGACAATATTCACCCAACCGATTACGTTAGCGGCTGGCGAGCTTATCCTAAGAAATGGTGTTGAAATAGAAGCGAAAA CAGTTTCGCAAACAGATGGTTCTTTAATCCTCATGGATACAGGAACAAAGCTGTCAGCGAAAACAGAAGATGTTACTCTG ACAAATTTGGCTATTAATCCTAATTCCTTAGATGGGAAAAATCTAGCCATTGTTGCAGCCGCAGCAAGTGCGAAAAACGT AACTCTATCCGGAGCTATTGGCGTTATTGATCCTACAGAAAAGTTTTATGAGAATCATAAACTAAATGATAGGTTAGCTT TAGAGGGAATAAAACTTTCAGCAAAAGGTGCAGTAACAACAACCAACGTACCCGGAGCCACTATTGGCACTCCTGAGAAA CATTATGGTTATCAGGGACACTGGACAGTTTCTTGGGTCTCAGATGATACATCGGATCCAAAAACAAAAGTCGCTGTCTT TAACTGGAATAAAACAGGATATGTTCCAAATCCTGAACGTCGCGCTTCCCTAGTACTAAATAGTCTTTGGGGATCCTTCA TGGATGTGCGCTCCATTCAAGAAGTGTTGGAACGTAGCGTAGATAGCCTCCTTGAGACACGCCGCGGCCTTTGGATTTCT GGAGTTGGTAACTTCTTCCATAAAGACAAAAGCGCCGAAAGCCGACAATTCCGTCACATTAGTGCGGGATATGTGTTAGG TGCCACAACAAATACTTCTCAGGAAGACACGCTTAGCGTAGCTTTCAGTCAGTTATTTGGAAAAGATAAGGACTACCTCG TAGCAAAAAACTCTGCCAACGTCTACTCAGGCTCCCTCTATTATCAACATGTGGGTAAGTTTGATAATCTGACACGGTTA TTTAAAGGTCCTAACTCTTGTTGTTCAGGATATTCTAAGGAAATTCCTATTTTCCTAGATGCACAAGTCACCTACTGCCA CACCAGCAACAATATGACAACAGCCTATACAGATTATCCTGAAGTGAAAGGCTCTTGGGGTAATGACACTGTTGGTATAG CATTATCGACAAGTGTACCTATTCCTGTATTTAGTTTTTCTCTCTTTGATAGCTACGCACCATGTGCAAAATTGCAAGTT GTCTATTCTCATCAAGAAGACTTTAAAGAACCAACAACAGAGGGTCGTGTTTTCGAAAGCTGCGATCTCCTCAATGTTTC TGTACCTATGGGTATAAAATTTGAGAAGCTCTCCTTCGGAGAGAAAACAGCTTACGATCTTACACTGCTGTATGTACCTG ATGTATATCGTCATAATCCAAGCAGCATAACAGGATTAGCTATTAATGATGTTTCTTGGTTAACAACAGCTACGAATCTT TCTAGACAAGCTTTCATAATTCGTGCCGGCAACCATATTGCCTTATCATCTGGTTTTGAGATGTTTAGTCAATTTGGCTT TGAATTGCGAAGCTCTTCAATAAACTATAACGTAGACCTTGGAACTAAGGTTTCTTTCTAA
Upstream 100 bases:
>100_bases AAAAAAACACGTCAAGTCTTTTCTATATTCGACTTGCTTTCTTTTGTACCAATGAGTATTTAACGAAACTGTTTTTTTCA TTTCACCACAAGTGTATAAA
Downstream 100 bases:
>100_bases AAGCATCCCCTGCTCATCTCTGGGCAGGGCTTCTTCTTTTCAGAACTCCCAATCCCCTTGACTTTTAATCATTTTTATGA TCGTTTAAGGCTATCTCAAA
Product: polymorphic outer membrane protein 9
Products: NA
Alternate protein names: Outer membrane protein 5; Polymorphic membrane protein 10 [H]
Number of amino acids: Translated: 926; Mature: 926
Protein sequence:
>926_residues MRPSLYKILISSSLTIPISFHFSQLHAEVALTQESVLNANGVFSPLSTSTAGGTTYNVESDISIVDAGQATALASAAFVQ TAADLTFKGNGHSLSLANINSGANTTGINVSTADKTLTLTDFSKLSFTKCPFFTTNTGKGAVQSGGALNLANNASILFDQ NHSAENGGATSCKALSLTGSIKEISFTTNSSAKKGGAIATTGVANLSDNPGTVVFSGNTAVNSGGAVYAEGATTIAGNGR VVFSNNSVSGSNDGCGGAIHCSKSGTTPILAIRDNKVLIFNENTSAEKGGAIYADKLNLSSGGLTIFTKNKATNATPKGG AIGISSSGECSLTAELGNITFENNLIATANNSSIKRNAITIESNGKFTNLRAASGKSITFYDPIVCEGACADLLTLNKAE GTKVYNGKIIFSGEQLTPEQTAIVDNSKTIFTQPITLAAGELILRNGVEIEAKTVSQTDGSLILMDTGTKLSAKTEDVTL TNLAINPNSLDGKNLAIVAAAASAKNVTLSGAIGVIDPTEKFYENHKLNDRLALEGIKLSAKGAVTTTNVPGATIGTPEK HYGYQGHWTVSWVSDDTSDPKTKVAVFNWNKTGYVPNPERRASLVLNSLWGSFMDVRSIQEVLERSVDSLLETRRGLWIS GVGNFFHKDKSAESRQFRHISAGYVLGATTNTSQEDTLSVAFSQLFGKDKDYLVAKNSANVYSGSLYYQHVGKFDNLTRL FKGPNSCCSGYSKEIPIFLDAQVTYCHTSNNMTTAYTDYPEVKGSWGNDTVGIALSTSVPIPVFSFSLFDSYAPCAKLQV VYSHQEDFKEPTTEGRVFESCDLLNVSVPMGIKFEKLSFGEKTAYDLTLLYVPDVYRHNPSSITGLAINDVSWLTTATNL SRQAFIIRAGNHIALSSGFEMFSQFGFELRSSSINYNVDLGTKVSF
Sequences:
>Translated_926_residues MRPSLYKILISSSLTIPISFHFSQLHAEVALTQESVLNANGVFSPLSTSTAGGTTYNVESDISIVDAGQATALASAAFVQ TAADLTFKGNGHSLSLANINSGANTTGINVSTADKTLTLTDFSKLSFTKCPFFTTNTGKGAVQSGGALNLANNASILFDQ NHSAENGGATSCKALSLTGSIKEISFTTNSSAKKGGAIATTGVANLSDNPGTVVFSGNTAVNSGGAVYAEGATTIAGNGR VVFSNNSVSGSNDGCGGAIHCSKSGTTPILAIRDNKVLIFNENTSAEKGGAIYADKLNLSSGGLTIFTKNKATNATPKGG AIGISSSGECSLTAELGNITFENNLIATANNSSIKRNAITIESNGKFTNLRAASGKSITFYDPIVCEGACADLLTLNKAE GTKVYNGKIIFSGEQLTPEQTAIVDNSKTIFTQPITLAAGELILRNGVEIEAKTVSQTDGSLILMDTGTKLSAKTEDVTL TNLAINPNSLDGKNLAIVAAAASAKNVTLSGAIGVIDPTEKFYENHKLNDRLALEGIKLSAKGAVTTTNVPGATIGTPEK HYGYQGHWTVSWVSDDTSDPKTKVAVFNWNKTGYVPNPERRASLVLNSLWGSFMDVRSIQEVLERSVDSLLETRRGLWIS GVGNFFHKDKSAESRQFRHISAGYVLGATTNTSQEDTLSVAFSQLFGKDKDYLVAKNSANVYSGSLYYQHVGKFDNLTRL FKGPNSCCSGYSKEIPIFLDAQVTYCHTSNNMTTAYTDYPEVKGSWGNDTVGIALSTSVPIPVFSFSLFDSYAPCAKLQV VYSHQEDFKEPTTEGRVFESCDLLNVSVPMGIKFEKLSFGEKTAYDLTLLYVPDVYRHNPSSITGLAINDVSWLTTATNL SRQAFIIRAGNHIALSSGFEMFSQFGFELRSSSINYNVDLGTKVSF >Mature_926_residues MRPSLYKILISSSLTIPISFHFSQLHAEVALTQESVLNANGVFSPLSTSTAGGTTYNVESDISIVDAGQATALASAAFVQ TAADLTFKGNGHSLSLANINSGANTTGINVSTADKTLTLTDFSKLSFTKCPFFTTNTGKGAVQSGGALNLANNASILFDQ NHSAENGGATSCKALSLTGSIKEISFTTNSSAKKGGAIATTGVANLSDNPGTVVFSGNTAVNSGGAVYAEGATTIAGNGR VVFSNNSVSGSNDGCGGAIHCSKSGTTPILAIRDNKVLIFNENTSAEKGGAIYADKLNLSSGGLTIFTKNKATNATPKGG AIGISSSGECSLTAELGNITFENNLIATANNSSIKRNAITIESNGKFTNLRAASGKSITFYDPIVCEGACADLLTLNKAE GTKVYNGKIIFSGEQLTPEQTAIVDNSKTIFTQPITLAAGELILRNGVEIEAKTVSQTDGSLILMDTGTKLSAKTEDVTL TNLAINPNSLDGKNLAIVAAAASAKNVTLSGAIGVIDPTEKFYENHKLNDRLALEGIKLSAKGAVTTTNVPGATIGTPEK HYGYQGHWTVSWVSDDTSDPKTKVAVFNWNKTGYVPNPERRASLVLNSLWGSFMDVRSIQEVLERSVDSLLETRRGLWIS GVGNFFHKDKSAESRQFRHISAGYVLGATTNTSQEDTLSVAFSQLFGKDKDYLVAKNSANVYSGSLYYQHVGKFDNLTRL FKGPNSCCSGYSKEIPIFLDAQVTYCHTSNNMTTAYTDYPEVKGSWGNDTVGIALSTSVPIPVFSFSLFDSYAPCAKLQV VYSHQEDFKEPTTEGRVFESCDLLNVSVPMGIKFEKLSFGEKTAYDLTLLYVPDVYRHNPSSITGLAINDVSWLTTATNL SRQAFIIRAGNHIALSSGFEMFSQFGFELRSSSINYNVDLGTKVSF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Secreted, cell wall. Cell outer membrane; Peripheral membrane protein; Extracellular side (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 autotransporter (TC 1.B.12) domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005546 - InterPro: IPR003368 - InterPro: IPR006315 - InterPro: IPR006626 - InterPro: IPR011427 [H]
Pfam domain/function: PF03797 Autotransporter; PF02415 Chlam_PMP; PF07548 ChlamPMP_M [H]
EC number: NA
Molecular weight: Translated: 98129; Mature: 98129
Theoretical pI: Translated: 6.67; Mature: 6.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRPSLYKILISSSLTIPISFHFSQLHAEVALTQESVLNANGVFSPLSTSTAGGTTYNVES CCCCEEEEEECCCEEEEEEEEEEHHEEEEEECHHHHCCCCCCCCCCCCCCCCCEEEEECC DISIVDAGQATALASAAFVQTAADLTFKGNGHSLSLANINSGANTTGINVSTADKTLTLT CCEEEECCCHHHHHHHHHHHHHCCEEECCCCCEEEEEEECCCCCCCCEEEECCCCEEEEE DFSKLSFTKCPFFTTNTGKGAVQSGGALNLANNASILFDQNHSAENGGATSCKALSLTGS CCCCCCEEECCEEECCCCCCCCCCCCEEEECCCCEEEEECCCCCCCCCCCCEEEEEECCC IKEISFTTNSSAKKGGAIATTGVANLSDNPGTVVFSGNTAVNSGGAVYAEGATTIAGNGR EEEEEEECCCCCCCCCCEEEEEECCCCCCCCEEEEECCEEECCCCEEEECCCEEEECCCE VVFSNNSVSGSNDGCGGAIHCSKSGTTPILAIRDNKVLIFNENTSAEKGGAIYADKLNLS EEECCCCCCCCCCCCCCEEEECCCCCCEEEEEECCEEEEECCCCCCCCCCEEEEEEEECC SGGLTIFTKNKATNATPKGGAIGISSSGECSLTAELGNITFENNLIATANNSSIKRNAIT CCCEEEEECCCCCCCCCCCCEEEECCCCCEEEEEEECCEEEECCEEEECCCCCEEEEEEE IESNGKFTNLRAASGKSITFYDPIVCEGACADLLTLNKAEGTKVYNGKIIFSGEQLTPEQ EECCCCEEEEEECCCCEEEEECCEEECCCCHHHEEEECCCCCEEECCEEEEECCCCCCCC TAIVDNSKTIFTQPITLAAGELILRNGVEIEAKTVSQTDGSLILMDTGTKLSAKTEDVTL EEEEECCCEEEECCHHHHCCEEEEECCCEEEEEEECCCCCCEEEEECCCCCCCCCCCEEE TNLAINPNSLDGKNLAIVAAAASAKNVTLSGAIGVIDPTEKFYENHKLNDRLALEGIKLS EEEEECCCCCCCCCEEEEEEECCCCEEEEECEEEECCCHHHHHHCCCCCCEEEEEEEEEE AKGAVTTTNVPGATIGTPEKHYGYQGHWTVSWVSDDTSDPKTKVAVFNWNKTGYVPNPER CCCCEEECCCCCCCCCCCHHHCCCCCEEEEEEECCCCCCCCEEEEEEECCCCCCCCCCHH RASLVLNSLWGSFMDVRSIQEVLERSVDSLLETRRGLWISGVGNFFHKDKSAESRQFRHI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCHHHHCCCCCCCHHEEEE SAGYVLGATTNTSQEDTLSVAFSQLFGKDKDYLVAKNSANVYSGSLYYQHVGKFDNLTRL ECCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCEEECEEEEEECCCHHHHHHH FKGPNSCCSGYSKEIPIFLDAQVTYCHTSNNMTTAYTDYPEVKGSWGNDTVGIALSTSVP HCCCCHHHCCCCCCCCEEEECEEEEEEECCCEEEEECCCCCCCCCCCCCEEEEEEECCCC IPVFSFSLFDSYAPCAKLQVVYSHQEDFKEPTTEGRVFESCDLLNVSVPMGIKFEKLSFG CCEEEEHHHHCCCCCEEEEEEECCHHHHCCCCCCCCEEECCCEEEEECCCCEEEEEECCC EKTAYDLTLLYVPDVYRHNPSSITGLAINDVSWLTTATNLSRQAFIIRAGNHIALSSGFE CCCEEEEEEEEECHHHCCCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCEEEECCCHH MFSQFGFELRSSSINYNVDLGTKVSF HHHHHCCEEECCCEEEEEECCCEECC >Mature Secondary Structure MRPSLYKILISSSLTIPISFHFSQLHAEVALTQESVLNANGVFSPLSTSTAGGTTYNVES CCCCEEEEEECCCEEEEEEEEEEHHEEEEEECHHHHCCCCCCCCCCCCCCCCCEEEEECC DISIVDAGQATALASAAFVQTAADLTFKGNGHSLSLANINSGANTTGINVSTADKTLTLT CCEEEECCCHHHHHHHHHHHHHCCEEECCCCCEEEEEEECCCCCCCCEEEECCCCEEEEE DFSKLSFTKCPFFTTNTGKGAVQSGGALNLANNASILFDQNHSAENGGATSCKALSLTGS CCCCCCEEECCEEECCCCCCCCCCCCEEEECCCCEEEEECCCCCCCCCCCCEEEEEECCC IKEISFTTNSSAKKGGAIATTGVANLSDNPGTVVFSGNTAVNSGGAVYAEGATTIAGNGR EEEEEEECCCCCCCCCCEEEEEECCCCCCCCEEEEECCEEECCCCEEEECCCEEEECCCE VVFSNNSVSGSNDGCGGAIHCSKSGTTPILAIRDNKVLIFNENTSAEKGGAIYADKLNLS EEECCCCCCCCCCCCCCEEEECCCCCCEEEEEECCEEEEECCCCCCCCCCEEEEEEEECC SGGLTIFTKNKATNATPKGGAIGISSSGECSLTAELGNITFENNLIATANNSSIKRNAIT CCCEEEEECCCCCCCCCCCCEEEECCCCCEEEEEEECCEEEECCEEEECCCCCEEEEEEE IESNGKFTNLRAASGKSITFYDPIVCEGACADLLTLNKAEGTKVYNGKIIFSGEQLTPEQ EECCCCEEEEEECCCCEEEEECCEEECCCCHHHEEEECCCCCEEECCEEEEECCCCCCCC TAIVDNSKTIFTQPITLAAGELILRNGVEIEAKTVSQTDGSLILMDTGTKLSAKTEDVTL EEEEECCCEEEECCHHHHCCEEEEECCCEEEEEEECCCCCCEEEEECCCCCCCCCCCEEE TNLAINPNSLDGKNLAIVAAAASAKNVTLSGAIGVIDPTEKFYENHKLNDRLALEGIKLS EEEEECCCCCCCCCEEEEEEECCCCEEEEECEEEECCCHHHHHHCCCCCCEEEEEEEEEE AKGAVTTTNVPGATIGTPEKHYGYQGHWTVSWVSDDTSDPKTKVAVFNWNKTGYVPNPER CCCCEEECCCCCCCCCCCHHHCCCCCEEEEEEECCCCCCCCEEEEEEECCCCCCCCCCHH RASLVLNSLWGSFMDVRSIQEVLERSVDSLLETRRGLWISGVGNFFHKDKSAESRQFRHI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCHHHHCCCCCCCHHEEEE SAGYVLGATTNTSQEDTLSVAFSQLFGKDKDYLVAKNSANVYSGSLYYQHVGKFDNLTRL ECCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCEEECEEEEEECCCHHHHHHH FKGPNSCCSGYSKEIPIFLDAQVTYCHTSNNMTTAYTDYPEVKGSWGNDTVGIALSTSVP HCCCCHHHCCCCCCCCEEEECEEEEEEECCCEEEEECCCCCCCCCCCCCEEEEEEECCCC IPVFSFSLFDSYAPCAKLQVVYSHQEDFKEPTTEGRVFESCDLLNVSVPMGIKFEKLSFG CCEEEEHHHHCCCCCEEEEEEECCHHHHCCCCCCCCEEECCCEEEEECCCCEEEEEECCC EKTAYDLTLLYVPDVYRHNPSSITGLAINDVSWLTTATNLSRQAFIIRAGNHIALSSGFE CCCEEEEEEEEECHHHCCCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCEEEECCCHH MFSQFGFELRSSSINYNVDLGTKVSF HHHHHCCEEECCCEEEEEECCCEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 10539856; 10684935; 10871362; 9864239 [H]