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The map label for this gene is sodB [H]

Identifier: 89257054

GI number: 89257054

Start: 1724094

End: 1724672

Strand: Reverse

Name: sodB [H]

Synonym: FTL_1791

Alternate gene names: 89257054

Gene position: 1724672-1724094 (Counterclockwise)

Preceding gene: 89257056

Following gene: 89257051

Centisome position: 90.96

GC content: 34.02

Gene sequence:

>579_bases
ATGAAATTTGAATTACCAAAACTACCTTACGCTGTTGATGCATTAGAGTCAACAATATCAAAAGAAACAATAGAGTATCA
CTATGGTAAACATCATCAAACATATGTAACTAATCTAAATAATTTAGTTGAGGGTACAGAGCACGATGGCAGAAACCTAG
AAGAAATCGTAAAAACTTCTAATGGCGGAATATTTAATAACGCTGCTCAAGTTTTTAATCATACTTTTTACTGGAATTGT
TTAACTCCAAACAAAACAGAGGCTTCAAGTCAGTTAAAAGCAGCATTGATCGAGACATTTGGTTCTGTAGAAAATTTTAA
AGAACAATTCTCTAAGGCAGCTATTGCAACATTTGGTTCTGGTTGGGCTTGGTTAGTAAAAAATACTGAAGGTAAACTTG
AAATAGTAACTACAAGTAACGCTGGTTGCCCATTAACAGAGAACAAAAAGCCATTGCTAACTTTTGATGTTTGGGAGCAC
GCATACTATATTGATTATCGTAATGCTAGACCTAAATATGTTGAAGCATTATGGGATATCGTAAACTGGCAATTTGTTTC
TGAGCAATTCGCTGATTAG

Upstream 100 bases:

>100_bases
GTTTAGAAATTTCACCTAAAAGATGATAGCATATTATACTATATGGGTATAGTAAGAAGATACTATAAAGTTAATTCACT
AATTCAAGGAGAGTAAGCAA

Downstream 100 bases:

>100_bases
GTTTTCTTTAAGTGGTAAAAAATAAGATTTCCTTATTCTCTTTTGTAATAGGGGTTTTATCAATAGTGGTTTTGTGATCT
TGATAGCTATGTTATTTCCA

Product: superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 192; Mature: 192

Protein sequence:

>192_residues
MKFELPKLPYAVDALESTISKETIEYHYGKHHQTYVTNLNNLVEGTEHDGRNLEEIVKTSNGGIFNNAAQVFNHTFYWNC
LTPNKTEASSQLKAALIETFGSVENFKEQFSKAAIATFGSGWAWLVKNTEGKLEIVTTSNAGCPLTENKKPLLTFDVWEH
AYYIDYRNARPKYVEALWDIVNWQFVSEQFAD

Sequences:

>Translated_192_residues
MKFELPKLPYAVDALESTISKETIEYHYGKHHQTYVTNLNNLVEGTEHDGRNLEEIVKTSNGGIFNNAAQVFNHTFYWNC
LTPNKTEASSQLKAALIETFGSVENFKEQFSKAAIATFGSGWAWLVKNTEGKLEIVTTSNAGCPLTENKKPLLTFDVWEH
AYYIDYRNARPKYVEALWDIVNWQFVSEQFAD
>Mature_192_residues
MKFELPKLPYAVDALESTISKETIEYHYGKHHQTYVTNLNNLVEGTEHDGRNLEEIVKTSNGGIFNNAAQVFNHTFYWNC
LTPNKTEASSQLKAALIETFGSVENFKEQFSKAAIATFGSGWAWLVKNTEGKLEIVTTSNAGCPLTENKKPLLTFDVWEH
AYYIDYRNARPKYVEALWDIVNWQFVSEQFAD

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=201, Percent_Identity=38.8059701492537, Blast_Score=138, Evalue=2e-33,
Organism=Homo sapiens, GI67782305, Length=201, Percent_Identity=38.8059701492537, Blast_Score=138, Evalue=2e-33,
Organism=Homo sapiens, GI67782309, Length=192, Percent_Identity=34.8958333333333, Blast_Score=115, Evalue=2e-26,
Organism=Escherichia coli, GI1787946, Length=192, Percent_Identity=66.1458333333333, Blast_Score=276, Evalue=5e-76,
Organism=Escherichia coli, GI1790342, Length=205, Percent_Identity=41.4634146341463, Blast_Score=159, Evalue=1e-40,
Organism=Caenorhabditis elegans, GI17506561, Length=194, Percent_Identity=41.2371134020619, Blast_Score=150, Evalue=5e-37,
Organism=Caenorhabditis elegans, GI17569479, Length=193, Percent_Identity=39.3782383419689, Blast_Score=144, Evalue=3e-35,
Organism=Saccharomyces cerevisiae, GI6321796, Length=204, Percent_Identity=33.8235294117647, Blast_Score=111, Evalue=7e-26,
Organism=Drosophila melanogaster, GI17136812, Length=196, Percent_Identity=42.8571428571429, Blast_Score=157, Evalue=5e-39,

Paralogues:

None

Copy number: 2020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 900 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 21940; Mature: 21940

Theoretical pI: Translated: 5.29; Mature: 5.29

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFELPKLPYAVDALESTISKETIEYHYGKHHQTYVTNLNNLVEGTEHDGRNLEEIVKTS
CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHCC
NGGIFNNAAQVFNHTFYWNCLTPNKTEASSQLKAALIETFGSVENFKEQFSKAAIATFGS
CCCCCHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCC
GWAWLVKNTEGKLEIVTTSNAGCPLTENKKPLLTFDVWEHAYYIDYRNARPKYVEALWDI
CEEEEEECCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCEEEEEECCCCHHHHHHHHHH
VNWQFVSEQFAD
HHHHHHHHHHCC
>Mature Secondary Structure
MKFELPKLPYAVDALESTISKETIEYHYGKHHQTYVTNLNNLVEGTEHDGRNLEEIVKTS
CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHCC
NGGIFNNAAQVFNHTFYWNCLTPNKTEASSQLKAALIETFGSVENFKEQFSKAAIATFGS
CCCCCHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCC
GWAWLVKNTEGKLEIVTTSNAGCPLTENKKPLLTFDVWEHAYYIDYRNARPKYVEALWDI
CEEEEEECCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCEEEEEECCCCHHHHHHHHHH
VNWQFVSEQFAD
HHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]