Click here to switch to the map view.

The map label for this gene is sdhC [H]

Identifier: 89257051

GI number: 89257051

Start: 1720543

End: 1720932

Strand: Reverse

Name: sdhC [H]

Synonym: FTL_1788

Alternate gene names: 89257051

Gene position: 1720932-1720543 (Counterclockwise)

Preceding gene: 89257054

Following gene: 89257050

Centisome position: 90.77

GC content: 35.9

Gene sequence:

>390_bases
ATGTCGAGCATGAAAAAAATTACTAATATTGACTTGATGTCAATAAAATCATATAACTTCCCAATCACAGCTATTAGCTC
TATTATGCACCGCATATCAGGAGTTGTGTTGATAATTGCGATACCACTTTGCGTGGTTGCGATGAACTATGCTCTTGCAG
GGCCTGATGGTTACCAGCAAACAGTTACTGTATTAACTAAATCTTGGTTTAGTGTATTTTTTTGGCTTTTTTTATCATCG
ATAACATATCACGTTTACGCTGGTATTAGACATATGATTATGGATATGGGCTTTGGTGAGAGTATGAAAGTGGCAAAAAT
CACTTCACTACTAGTTATCGTTTTGGGTGTTTTATCAGCTATTTTATGGGGGTGTTACTTATGGCTGTAA

Upstream 100 bases:

>100_bases
AAGTGTTTGAATTTGTTTGAGTAAAAATATATCATTAAGAGTTGTTTGTATAACATTGGTTACATCTGATCTACTTCTCT
ACAAAAATTGCTTCGGAGGA

Downstream 100 bases:

>100_bases
TTTCATTAACTTCTTCTGGAATTAAAGACTTTTTCGTACAAAGAGTTACGGCTGTAATTATTGCTGTATATTTTGGTTAT
CTTATCCTAGAAGCTTTGTA

Product: succinate dehydrogenase, cytochrome b556

Products: fumarate; reduced acceptor

Alternate protein names: Cytochrome b-556 [H]

Number of amino acids: Translated: 129; Mature: 128

Protein sequence:

>129_residues
MSSMKKITNIDLMSIKSYNFPITAISSIMHRISGVVLIIAIPLCVVAMNYALAGPDGYQQTVTVLTKSWFSVFFWLFLSS
ITYHVYAGIRHMIMDMGFGESMKVAKITSLLVIVLGVLSAILWGCYLWL

Sequences:

>Translated_129_residues
MSSMKKITNIDLMSIKSYNFPITAISSIMHRISGVVLIIAIPLCVVAMNYALAGPDGYQQTVTVLTKSWFSVFFWLFLSS
ITYHVYAGIRHMIMDMGFGESMKVAKITSLLVIVLGVLSAILWGCYLWL
>Mature_128_residues
SSMKKITNIDLMSIKSYNFPITAISSIMHRISGVVLIIAIPLCVVAMNYALAGPDGYQQTVTVLTKSWFSVFFWLFLSSI
TYHVYAGIRHMIMDMGFGESMKVAKITSLLVIVLGVLSAILWGCYLWL

Specific function: Membrane-anchoring subunit of succinate dehydrogenase (SDH) [H]

COG id: COG2009

COG function: function code C; Succinate dehydrogenase/fumarate reductase, cytochrome b subunit

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b560 family [H]

Homologues:

Organism=Escherichia coli, GI1786940, Length=123, Percent_Identity=34.9593495934959, Blast_Score=88, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018495
- InterPro:   IPR014314
- InterPro:   IPR014361
- InterPro:   IPR000701 [H]

Pfam domain/function: PF01127 Sdh_cyt [H]

EC number: 1.3.99.1

Molecular weight: Translated: 14406; Mature: 14274

Theoretical pI: Translated: 9.44; Mature: 9.44

Prosite motif: PS01001 SDH_CYT_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
7.0 %Met     (Translated Protein)
8.5 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
6.2 %Met     (Mature Protein)
7.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSMKKITNIDLMSIKSYNFPITAISSIMHRISGVVLIIAIPLCVVAMNYALAGPDGYQQ
CCCHHHHHCCHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
TVTVLTKSWFSVFFWLFLSSITYHVYAGIRHMIMDMGFGESMKVAKITSLLVIVLGVLSA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
ILWGCYLWL
HHHHHHHCC
>Mature Secondary Structure 
SSMKKITNIDLMSIKSYNFPITAISSIMHRISGVVLIIAIPLCVVAMNYALAGPDGYQQ
CCHHHHHCCHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
TVTVLTKSWFSVFFWLFLSSITYHVYAGIRHMIMDMGFGESMKVAKITSLLVIVLGVLSA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
ILWGCYLWL
HHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: succinate; acceptor

Specific reaction: succinate + acceptor = fumarate + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]