| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
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The map label for this gene is blc [C]
Identifier: 89056317
GI number: 89056317
Start: 3918617
End: 3919213
Strand: Direct
Name: blc [C]
Synonym: Jann_3826
Alternate gene names: 89056317
Gene position: 3918617-3919213 (Clockwise)
Preceding gene: 89056316
Following gene: 89056318
Centisome position: 90.75
GC content: 66.5
Gene sequence:
>597_bases ATGACGGTGCAGAACCTGACACCTTCGGGGCGGCGACCACGCCTCTGGGCACCTTCGGTGCGTTTGGGCCTCCTCGGGCT GATCCCAGCCCTCCTCGCAATTGCGGCGTGCGGCGCGGTTTTGGGACCGTCCTACCGGGATGAGAGCGTCACCATCGCCT CATCAGCGAACTTCGACGCCGCACGCTATGTGGGCCGTTGGTATGAGGTTGCGCGCTATCCCAACCCGTTTCAGGCCAAC TGCCCCGGCGCGATTGCCGAATATGGTCCGTCTGACACGCCCGGCGTTCTTACCGTCCGCAACACCTGCCTCGACGCCAA TGGCCAGCCCACCGACGTCATCACCGGCACCGCCACGGACGAAGGGCTCGGTCGCCTTTCCGTCCGCCTGCAGGGCGTCC CCGTCGCTGCCCCCTATTGGGTGTTGTGGGTGGATGAAGGCTATCGCACAGCCGTCGTTGGCGCACCCAACGGGCGCGTG GGATGGATCCTGAACCGGGAGCCGGACATCCCCGCAGACCGCCTCGCCGCCGCCCGGGAGGTCCTGGACTTCAACGGCTA CGACCTGGGCCAACTGACCCGGAGTGTGACACCATGA
Upstream 100 bases:
>100_bases TGGTTGAGCAGGCCGTTGGCATTATCGAGGGGATGGGCGCACGGGTGATCGGCCCGGACATGGTGCGCGAGACACTGGGC CTGACCAAGCAGGCCCCGGC
Downstream 100 bases:
>100_bases AAACCGCAATCATCGGCGGGGGCGTCATTGGCGGCGGATGGGCCGCGCGCTTCCTTCTCAACGGCTGGAATGTGGCGATC TATGACCCTGATCCGGAGGC
Product: Lipocalin-like
Products: NA
Alternate protein names: Outer Membrane Lipoprotein Blc; Outer Membrane Lipoprotein; Lipocalin-Like; Lipocalin; Lipocalin-Related Protein And Bos/Can/Equ Allergen; Lipocalin-Like Domain-Containing Protein; Lipocalin-Like Domain Protein; Lipocalin-Like Lipoprotein; Lipocalin-Like Protein; Lipoprotein; Exported Protein
Number of amino acids: Translated: 198; Mature: 197
Protein sequence:
>198_residues MTVQNLTPSGRRPRLWAPSVRLGLLGLIPALLAIAACGAVLGPSYRDESVTIASSANFDAARYVGRWYEVARYPNPFQAN CPGAIAEYGPSDTPGVLTVRNTCLDANGQPTDVITGTATDEGLGRLSVRLQGVPVAAPYWVLWVDEGYRTAVVGAPNGRV GWILNREPDIPADRLAAAREVLDFNGYDLGQLTRSVTP
Sequences:
>Translated_198_residues MTVQNLTPSGRRPRLWAPSVRLGLLGLIPALLAIAACGAVLGPSYRDESVTIASSANFDAARYVGRWYEVARYPNPFQAN CPGAIAEYGPSDTPGVLTVRNTCLDANGQPTDVITGTATDEGLGRLSVRLQGVPVAAPYWVLWVDEGYRTAVVGAPNGRV GWILNREPDIPADRLAAAREVLDFNGYDLGQLTRSVTP >Mature_197_residues TVQNLTPSGRRPRLWAPSVRLGLLGLIPALLAIAACGAVLGPSYRDESVTIASSANFDAARYVGRWYEVARYPNPFQANC PGAIAEYGPSDTPGVLTVRNTCLDANGQPTDVITGTATDEGLGRLSVRLQGVPVAAPYWVLWVDEGYRTAVVGAPNGRVG WILNREPDIPADRLAAAREVLDFNGYDLGQLTRSVTP
Specific function: May Serve A Starvation Response Function In E. Coli. [C]
COG id: COG3040
COG function: function code M; Bacterial lipocalin
Gene ontology:
Cell location: Attached To The Outer Membrane By A Lipid Anchor [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI4502163, Length=146, Percent_Identity=31.5068493150685, Blast_Score=68, Evalue=4e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21164; Mature: 21033
Theoretical pI: Translated: 5.23; Mature: 5.23
Prosite motif: PS00213 LIPOCALIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTVQNLTPSGRRPRLWAPSVRLGLLGLIPALLAIAACGAVLGPSYRDESVTIASSANFDA CCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHH ARYVGRWYEVARYPNPFQANCPGAIAEYGPSDTPGVLTVRNTCLDANGQPTDVITGTATD HHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCCEEEEEEEEECCCCCCCEEEEECCCC EGLGRLSVRLQGVPVAAPYWVLWVDEGYRTAVVGAPNGRVGWILNREPDIPADRLAAARE CCCCEEEEEEECCCCCCCEEEEEEECCCEEEEEECCCCCEEEEECCCCCCCHHHHHHHHH VLDFNGYDLGQLTRSVTP HHCCCCCCHHHHHHCCCC >Mature Secondary Structure TVQNLTPSGRRPRLWAPSVRLGLLGLIPALLAIAACGAVLGPSYRDESVTIASSANFDA CCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHH ARYVGRWYEVARYPNPFQANCPGAIAEYGPSDTPGVLTVRNTCLDANGQPTDVITGTATD HHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCCEEEEEEEEECCCCCCCEEEEECCCC EGLGRLSVRLQGVPVAAPYWVLWVDEGYRTAVVGAPNGRVGWILNREPDIPADRLAAARE CCCCEEEEEEECCCCCCCEEEEEEECCCEEEEEECCCCCEEEEECCCCCCCHHHHHHHHH VLDFNGYDLGQLTRSVTP HHCCCCCCHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA