| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
Click here to switch to the map view.
The map label for this gene is 89056316
Identifier: 89056316
GI number: 89056316
Start: 3917709
End: 3918620
Strand: Direct
Name: 89056316
Synonym: Jann_3825
Alternate gene names: NA
Gene position: 3917709-3918620 (Clockwise)
Preceding gene: 89056315
Following gene: 89056317
Centisome position: 90.73
GC content: 62.94
Gene sequence:
>912_bases ATGCCGCTTACCATGAACAAAGATGTTTTCATCACCTGCGCGGTCACCGGCTCCGGCTCGACCCAGGATCGCAGCCCCCA TGTGCCACGCTCGCCCAAACAGATCGCCGAAAGTGCGATTGAGGCCGCCCGCGCGGGCGCAGCGATCGTCCATTGCCACG TCCGTGATCCCGAGAGCGGTGCGCCCTCACGCGATCTGTCCTATTACCGGGAGGTGACCGACCGCATCCGGGAGGCCGAC ATTGACGTCGTCCTGAACCTGACGGCGGGCATGGGGGGCGACATCACATTCGGCTCGACCGACGCGCCGTTCCCGGTGGA TGAAGCGGGCACCGATATGGTCGGGGCGGCCGAGCGCGTGGCGCATATCGCCGATTGCCTGCCCGAGATCTGCACGCTGG ATTGCGGCACGATGAACTTTGCCGAGGCCGACTACGTCATGACCAACACCCCGGGCATGCTCCGCGCCATGGGACGGATG ATGACGGATCTGGGTGTGAAGCCGGAGATTGAGGCGTTTGATACTGGCCATCTTTGGTTCGCAAAGGAGCTGGTGAAGGA GGGCGTGCTCGACAGTCCCGCGCTGGTGCAGCTTTGCATGGGCGTGCCTTGGGGCGCACCCGATGACCTCAATACATTCA TGGCAATGGTCAACAATGTGCCGGACAATTGGACCTTCAGTGCCTTCGCGCTTGGGCGCAATGAAATGGCCTACGTTGCG GCATCCGTTCTCGCCGGCGGCAATGTGCGCGTCGGATTGGAGGACAATCTCTGGTTGGAGAAGGGCGTATTGGCGACCAA CGCGCAGTTGGTTGAGCAGGCCGTTGGCATTATCGAGGGGATGGGCGCACGGGTGATCGGCCCGGACATGGTGCGCGAGA CACTGGGCCTGACCAAGCAGGCCCCGGCATGA
Upstream 100 bases:
>100_bases ATGGGCCACGACTTGGGGGACGGCGGGTGGGGCGAGGTTGACGGTTTTGCCCCGCAAAATCGTTGACCAGCGTCACCCCC GGCCAAAAAAGGAAAAGAAT
Downstream 100 bases:
>100_bases CGGTGCAGAACCTGACACCTTCGGGGCGGCGACCACGCCTCTGGGCACCTTCGGTGCGTTTGGGCCTCCTCGGGCTGATC CCAGCCCTCCTCGCAATTGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 303; Mature: 302
Protein sequence:
>303_residues MPLTMNKDVFITCAVTGSGSTQDRSPHVPRSPKQIAESAIEAARAGAAIVHCHVRDPESGAPSRDLSYYREVTDRIREAD IDVVLNLTAGMGGDITFGSTDAPFPVDEAGTDMVGAAERVAHIADCLPEICTLDCGTMNFAEADYVMTNTPGMLRAMGRM MTDLGVKPEIEAFDTGHLWFAKELVKEGVLDSPALVQLCMGVPWGAPDDLNTFMAMVNNVPDNWTFSAFALGRNEMAYVA ASVLAGGNVRVGLEDNLWLEKGVLATNAQLVEQAVGIIEGMGARVIGPDMVRETLGLTKQAPA
Sequences:
>Translated_303_residues MPLTMNKDVFITCAVTGSGSTQDRSPHVPRSPKQIAESAIEAARAGAAIVHCHVRDPESGAPSRDLSYYREVTDRIREAD IDVVLNLTAGMGGDITFGSTDAPFPVDEAGTDMVGAAERVAHIADCLPEICTLDCGTMNFAEADYVMTNTPGMLRAMGRM MTDLGVKPEIEAFDTGHLWFAKELVKEGVLDSPALVQLCMGVPWGAPDDLNTFMAMVNNVPDNWTFSAFALGRNEMAYVA ASVLAGGNVRVGLEDNLWLEKGVLATNAQLVEQAVGIIEGMGARVIGPDMVRETLGLTKQAPA >Mature_302_residues PLTMNKDVFITCAVTGSGSTQDRSPHVPRSPKQIAESAIEAARAGAAIVHCHVRDPESGAPSRDLSYYREVTDRIREADI DVVLNLTAGMGGDITFGSTDAPFPVDEAGTDMVGAAERVAHIADCLPEICTLDCGTMNFAEADYVMTNTPGMLRAMGRMM TDLGVKPEIEAFDTGHLWFAKELVKEGVLDSPALVQLCMGVPWGAPDDLNTFMAMVNNVPDNWTFSAFALGRNEMAYVAA SVLAGGNVRVGLEDNLWLEKGVLATNAQLVEQAVGIIEGMGARVIGPDMVRETLGLTKQAPA
Specific function: Unknown
COG id: COG3246
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32302; Mature: 32171
Theoretical pI: Translated: 4.29; Mature: 4.29
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 5.3 %Met (Translated Protein) 7.3 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 5.0 %Met (Mature Protein) 7.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPLTMNKDVFITCAVTGSGSTQDRSPHVPRSPKQIAESAIEAARAGAAIVHCHVRDPESG CCCCCCCCEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCC APSRDLSYYREVTDRIREADIDVVLNLTAGMGGDITFGSTDAPFPVDEAGTDMVGAAERV CCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHH AHIADCLPEICTLDCGTMNFAEADYVMTNTPGMLRAMGRMMTDLGVKPEIEAFDTGHLWF HHHHHHHHHHHHCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHH AKELVKEGVLDSPALVQLCMGVPWGAPDDLNTFMAMVNNVPDNWTFSAFALGRNEMAYVA HHHHHHCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHH ASVLAGGNVRVGLEDNLWLEKGVLATNAQLVEQAVGIIEGMGARVIGPDMVRETLGLTKQ HHHHCCCCEEECCCCCCCHHCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCC APA CCC >Mature Secondary Structure PLTMNKDVFITCAVTGSGSTQDRSPHVPRSPKQIAESAIEAARAGAAIVHCHVRDPESG CCCCCCCEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCC APSRDLSYYREVTDRIREADIDVVLNLTAGMGGDITFGSTDAPFPVDEAGTDMVGAAERV CCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHH AHIADCLPEICTLDCGTMNFAEADYVMTNTPGMLRAMGRMMTDLGVKPEIEAFDTGHLWF HHHHHHHHHHHHCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHH AKELVKEGVLDSPALVQLCMGVPWGAPDDLNTFMAMVNNVPDNWTFSAFALGRNEMAYVA HHHHHHCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHH ASVLAGGNVRVGLEDNLWLEKGVLATNAQLVEQAVGIIEGMGARVIGPDMVRETLGLTKQ HHHHCCCCEEECCCCCCCHHCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCC APA CCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA