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The map label for this gene is ddpA [H]

Identifier: 89056295

GI number: 89056295

Start: 3889368

End: 3890873

Strand: Direct

Name: ddpA [H]

Synonym: Jann_3804

Alternate gene names: 89056295

Gene position: 3889368-3890873 (Clockwise)

Preceding gene: 89056294

Following gene: 89056296

Centisome position: 90.07

GC content: 63.35

Gene sequence:

>1506_bases
ATGACCTCGATCAAAACAACCGCCCGCGCGCTGGCACTCATAAGCACCGCCCTCGCGGCCCCATTGTCCGCGCAAACGCT
TGATCTTGCATGGTCCCAGGACGCCACCGGCCTTGATCCGCACACGCAGCCCGGCTTCGCGACGATCCGCCTGCTGGAAT
TGATGTATGAGCCGCTTTTGCGTCTGGATGCCAACCTGGAGCTTCAGCCCGCCATCGCGCAAAGCTGGTCCTTCTCCGAC
GATGGTCTGCAACTGACATTCCAACTGGACCCCGCGGCGATGTTCCACGACGGCACATCCGTGACCTCTGCCGATGTCCG
CGCCTCGTTCGAGCGTATTCTGGACGAGGAAACCGGCGCGATTTCGCGGGCGAACTACACGTCCATCATCAATATCGAAA
CACCCGATGATGCCACCGTGGTGTTTGAACTGGATCGCCCCGATGCGCCGATCCTCAACGGTCTGGCCACGGTGAACGCC
GCCGTCCTGCCTGCGTCGGCGATTGAGGCAGGCACGATCGCCACGGAAGTCGTGGGCTCCGGCCCGTTCATGTTGGACGC
CCGCACGCCCAACGCCAGCGCCACCCTGACGAGTTTCGCGGATTGGCATGGCGGCGACGTGGCCTACGACACCCTGTCCA
TCAGCGTGCTGCCCGATGAAACCGCGCTTCTGGGTGCCTTGCGTGCCGGTCAGGCCGATTTTGCATTGATCAACGATCCG
TTGGTCGCGACGCTGGTGCCCTCTACGGATGGATTGACGCTGAACACCGCGCCCACGCTCAGCTACTATGTGCTGCAACT
CAACGCAGCCCGGGAGCCGATGGACTCGCTGCCCCTGCGGCAGGCGATCAGCTGCGCGATCAACCGCCAGGACATTCTGG
ATGCCGCCCTTCTGGGTGAGGGGGAGGTGACGGGTCCCCTGACATCCCCCGCCTATCGCACCGACCCAAGCAGCCTGTTC
TGCTATGAGCAGGATCAGGATCGCGCCCGCGCGTTGCTGGCAGAGGCGGGCTTTGCCGATGGCTTCACGGCCACCGTCAT
GGCCGCAACCGGTGAGCCGCCCACCGCATCGGCCGTGGCGCAGGTGATCCAGTCGCAACTGTCTGAGGTCGGCATCACGC
TTGAGATCGAGATGCAGGAGCTGAGCGTCTATATCGACCGCTGGCTTGCCGCGGATTTCGACATGGCCGTGGCGCTGAAC
GGCGGGCGCGTGGACCCCTATACGATGTACAACCGCTACTGGACCCGCGACGGGAACCTGCAAGGCGTCGCCAACTACAT
CGATGATACACTCGACACGCTGATGAACGATGGCCGGGCCGAGACGGGCGAAGAGGCCCGCCGGGAGATCTATGCCAACT
TCGAGTCCCATCTGGCCGAAATGTCGCCCTGGGTCTGGCTGTTCACTGGCAACACCTACACGGCTCAGACCGACGCGGTC
TCCGGATTCGTTCCCACGCCCAACGGATCGCTCTTCGGCCTCGTGGATGTGACCCTGGCTGAATAA

Upstream 100 bases:

>100_bases
CTGGAGGCTGAAAACGGCTTCCTGCGCAAAGCCATTGAACGAGCGGAGAAAACTCCGCCGCAAAGCTAGAGTAATTCACA
CAAACTGGGAGATAACTGGA

Downstream 100 bases:

>100_bases
CAAACGGCACGGGACACCCGGCATGAGCTATCTTCTAAGGCGCCTCGCGGTTTTTCCGCTGGTCATGCTGGGTGTGTCGA
TTTTTGTTTTCGTTGCAATC

Product: extracellular solute-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 501; Mature: 500

Protein sequence:

>501_residues
MTSIKTTARALALISTALAAPLSAQTLDLAWSQDATGLDPHTQPGFATIRLLELMYEPLLRLDANLELQPAIAQSWSFSD
DGLQLTFQLDPAAMFHDGTSVTSADVRASFERILDEETGAISRANYTSIINIETPDDATVVFELDRPDAPILNGLATVNA
AVLPASAIEAGTIATEVVGSGPFMLDARTPNASATLTSFADWHGGDVAYDTLSISVLPDETALLGALRAGQADFALINDP
LVATLVPSTDGLTLNTAPTLSYYVLQLNAAREPMDSLPLRQAISCAINRQDILDAALLGEGEVTGPLTSPAYRTDPSSLF
CYEQDQDRARALLAEAGFADGFTATVMAATGEPPTASAVAQVIQSQLSEVGITLEIEMQELSVYIDRWLAADFDMAVALN
GGRVDPYTMYNRYWTRDGNLQGVANYIDDTLDTLMNDGRAETGEEARREIYANFESHLAEMSPWVWLFTGNTYTAQTDAV
SGFVPTPNGSLFGLVDVTLAE

Sequences:

>Translated_501_residues
MTSIKTTARALALISTALAAPLSAQTLDLAWSQDATGLDPHTQPGFATIRLLELMYEPLLRLDANLELQPAIAQSWSFSD
DGLQLTFQLDPAAMFHDGTSVTSADVRASFERILDEETGAISRANYTSIINIETPDDATVVFELDRPDAPILNGLATVNA
AVLPASAIEAGTIATEVVGSGPFMLDARTPNASATLTSFADWHGGDVAYDTLSISVLPDETALLGALRAGQADFALINDP
LVATLVPSTDGLTLNTAPTLSYYVLQLNAAREPMDSLPLRQAISCAINRQDILDAALLGEGEVTGPLTSPAYRTDPSSLF
CYEQDQDRARALLAEAGFADGFTATVMAATGEPPTASAVAQVIQSQLSEVGITLEIEMQELSVYIDRWLAADFDMAVALN
GGRVDPYTMYNRYWTRDGNLQGVANYIDDTLDTLMNDGRAETGEEARREIYANFESHLAEMSPWVWLFTGNTYTAQTDAV
SGFVPTPNGSLFGLVDVTLAE
>Mature_500_residues
TSIKTTARALALISTALAAPLSAQTLDLAWSQDATGLDPHTQPGFATIRLLELMYEPLLRLDANLELQPAIAQSWSFSDD
GLQLTFQLDPAAMFHDGTSVTSADVRASFERILDEETGAISRANYTSIINIETPDDATVVFELDRPDAPILNGLATVNAA
VLPASAIEAGTIATEVVGSGPFMLDARTPNASATLTSFADWHGGDVAYDTLSISVLPDETALLGALRAGQADFALINDPL
VATLVPSTDGLTLNTAPTLSYYVLQLNAAREPMDSLPLRQAISCAINRQDILDAALLGEGEVTGPLTSPAYRTDPSSLFC
YEQDQDRARALLAEAGFADGFTATVMAATGEPPTASAVAQVIQSQLSEVGITLEIEMQELSVYIDRWLAADFDMAVALNG
GRVDPYTMYNRYWTRDGNLQGVANYIDDTLDTLMNDGRAETGEEARREIYANFESHLAEMSPWVWLFTGNTYTAQTDAVS
GFVPTPNGSLFGLVDVTLAE

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1787762, Length=429, Percent_Identity=27.7389277389277, Blast_Score=144, Evalue=2e-35,
Organism=Escherichia coli, GI1787052, Length=508, Percent_Identity=25.5905511811024, Blast_Score=139, Evalue=4e-34,
Organism=Escherichia coli, GI1789966, Length=515, Percent_Identity=24.2718446601942, Blast_Score=139, Evalue=6e-34,
Organism=Escherichia coli, GI1789887, Length=430, Percent_Identity=22.093023255814, Blast_Score=96, Evalue=7e-21,
Organism=Escherichia coli, GI87081878, Length=462, Percent_Identity=25.5411255411255, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI1787495, Length=530, Percent_Identity=23.9622641509434, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI1787551, Length=472, Percent_Identity=22.2457627118644, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI1789397, Length=500, Percent_Identity=20.8, Blast_Score=67, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 53638; Mature: 53507

Theoretical pI: Translated: 3.81; Mature: 3.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSIKTTARALALISTALAAPLSAQTLDLAWSQDATGLDPHTQPGFATIRLLELMYEPLL
CCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHH
RLDANLELQPAIAQSWSFSDDGLQLTFQLDPAAMFHDGTSVTSADVRASFERILDEETGA
HCCCCCEECCHHHCCCCCCCCCEEEEEEECCHHEEECCCCCCHHHHHHHHHHHHHHHCCC
ISRANYTSIINIETPDDATVVFELDRPDAPILNGLATVNAAVLPASAIEAGTIATEVVGS
EEECCCEEEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHCCHHHHCCCCHHHHHHCC
GPFMLDARTPNASATLTSFADWHGGDVAYDTLSISVLPDETALLGALRAGQADFALINDP
CCEEEEECCCCCCEEEEECCCCCCCCEEEEEEEEEECCCCHHHHHHHHCCCCCEEEECCC
LVATLVPSTDGLTLNTAPTLSYYVLQLNAAREPMDSLPLRQAISCAINRQDILDAALLGE
EEEEEECCCCCEEEECCCCEEEEEEEECCCCCCHHHCCHHHHHHHHCCHHHHHHHHHCCC
GEVTGPLTSPAYRTDPSSLFCYEQDQDRARALLAEAGFADGFTATVMAATGEPPTASAVA
CCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHH
QVIQSQLSEVGITLEIEMQELSVYIDRWLAADFDMAVALNGGRVDPYTMYNRYWTRDGNL
HHHHHHHHHCCEEEEEEHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEECEEECCCCCC
QGVANYIDDTLDTLMNDGRAETGEEARREIYANFESHLAEMSPWVWLFTGNTYTAQTDAV
HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCEEEECCCCC
SGFVPTPNGSLFGLVDVTLAE
CCEEECCCCCEEEEEEEEECC
>Mature Secondary Structure 
TSIKTTARALALISTALAAPLSAQTLDLAWSQDATGLDPHTQPGFATIRLLELMYEPLL
CCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHH
RLDANLELQPAIAQSWSFSDDGLQLTFQLDPAAMFHDGTSVTSADVRASFERILDEETGA
HCCCCCEECCHHHCCCCCCCCCEEEEEEECCHHEEECCCCCCHHHHHHHHHHHHHHHCCC
ISRANYTSIINIETPDDATVVFELDRPDAPILNGLATVNAAVLPASAIEAGTIATEVVGS
EEECCCEEEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHCCHHHHCCCCHHHHHHCC
GPFMLDARTPNASATLTSFADWHGGDVAYDTLSISVLPDETALLGALRAGQADFALINDP
CCEEEEECCCCCCEEEEECCCCCCCCEEEEEEEEEECCCCHHHHHHHHCCCCCEEEECCC
LVATLVPSTDGLTLNTAPTLSYYVLQLNAAREPMDSLPLRQAISCAINRQDILDAALLGE
EEEEEECCCCCEEEECCCCEEEEEEEECCCCCCHHHCCHHHHHHHHCCHHHHHHHHHCCC
GEVTGPLTSPAYRTDPSSLFCYEQDQDRARALLAEAGFADGFTATVMAATGEPPTASAVA
CCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHH
QVIQSQLSEVGITLEIEMQELSVYIDRWLAADFDMAVALNGGRVDPYTMYNRYWTRDGNL
HHHHHHHHHCCEEEEEEHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEECEEECCCCCC
QGVANYIDDTLDTLMNDGRAETGEEARREIYANFESHLAEMSPWVWLFTGNTYTAQTDAV
HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCEEEECCCCC
SGFVPTPNGSLFGLVDVTLAE
CCEEECCCCCEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]