| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
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The map label for this gene is vipC [H]
Identifier: 89056151
GI number: 89056151
Start: 3734953
End: 3737217
Strand: Direct
Name: vipC [H]
Synonym: Jann_3660
Alternate gene names: 89056151
Gene position: 3734953-3737217 (Clockwise)
Preceding gene: 89056150
Following gene: 89056152
Centisome position: 86.5
GC content: 63.84
Gene sequence:
>2265_bases ATGGGAAACGTCGTTTCTGCCGGTGAGATCAGGCGCAGCGTTGTGGACTTGTGCAACCAGGGTCAGTTCTTCGCAGCCCA TATGCGGCTGATCGACAATGGGCTGGACGCGCATACGCACCCCAGCCTGTGGGAACTGATAGAGCGCCGGGCCGCAGAAG CGGGCGACGAGGCACTGGCCCATCGCGTGCGTCGGGAGATCTTGGCTGCTGACGTGGCCAGCGTCGACACCGTGTTGAAC GAGGCAAGATACGAGATTGAACAGGGACAGCTCGGGCGGGCGCGGGCGCTTCTTGCGCGAACGTTTGGGGAAGAGCCCGA AAACAGCGAAGCGCGCATCTTGCTTGGTATCGCGCTGGCCCCTGAAGATCGGGCCGCCGCCATTCATCTGCTCGATGACG CCCAAAACGGATCAGAGGTCGAGACGCTCTGGGCCGTGGATGCCTTCCGCGATCTGGGGGAACTCAAGCGCGCGATGCGC CTTTGTCAGACTGCGATCAACCGGTTTCCGATGAACGCGATGTTCCGAAATCGCCTAGGCTGGATCGCGGAGGGGGTTGG AGATTTCGAAACGGCTATTGCCGCGGCGACAATGAACCTGAACGGGGATCCCGACACCAAGGTGAGGGCCCTGAACAGAT TGGTGCGACTGCACCGGCGTCTTGGCGACAAGCCCAAGGCGATGGTGTACGCCGCCCAACTGTTGCGGGAGGCCGGGAGC CCTGTGCAGAAGCTCGCATTGGCCCGAACGTTGGGACAAACCGACCTGCTTTACGGTATCGTCGGATCCCTGCCGTCGTT GCATGCGCGCGGAGGCCTCGCGGAAGGTGAAGCCCGGAAGGTGCTGACCTTTCTCCTCGATGAGGGCGAGATTGGGTTGG TGCTGTTTCTCTGGCGTGAGGGGGTTCCGATCGAGGCGGATATGCGACGGGTGCTGATGCGCAAAGGTTTTGGCGAGGCC CGTGCAGATCTTCCGCGATCCATTGAGGATGCCATGGGTATCCGCAGCCCCGAGGTTCTCTTCCCTCTCCTACCAGAGGC GTCGGATCTGCCATTGCCAAGCGATTGGTCGCCGCCCCTGCGCGATACCGACAAGATCATGCTCGTGAATTCGGTGCTGG CGGCGGGCGGGGCGGAGCGGCAGTTCCTTATGCTTGCACGTGCACTTGTGGCGGGCGGCATCGATCCAGACCGGCTGCAT GCCGCCTTGTTTTCGCTCGAACGGGACCGGGGCCATGGTCATTTTGAGGACGCATTGCGGGCTACGGGCATTCACGTGCA CGATCTGTCGGCGCAGGACCTGTCGTCTGTTGTCATGCGCGATCACCAGCAGGATACAATGGCCCTGCTTCCCGGTCGGA TGAGAAGTGATGTCGTGGCCCTGTACGGCCTTGCGCAGCAGCTGAAGCCTGCGGTCATTCATGGCTGGCAAGACCGGGCT GGCGTTGCGTCGGGGCTGGTCAGTCAGCTTCTCGGCATCAGGCGCACGGTGATCAGCGCGCGGAACATGCGGCCCCGCAA ACGCGGTGATGAGGCGGATTGGATCGCGCATTCCGTGTACAAGGACCTGGTTGCGATGCCATCCGTGGCGATCACGGCCA ATGCCACCGAAGGCGCCCGCGACTACGAGGACTGGCTGGATCTTCCGCGGGGAGAGATCTCCATCCTGTCGAATGCCGTG GATGAAACCGTCTTCTTCCCCACGCCCAACCCGCCGCCCTCGGACGGCCCCATTCGCATTCTGGGGGTGTTCCGACTGGC CGAAAACAAGCGGCCGCTCCTGTGGGTCGACACGATGGCGGCGCTGCGCAACCGGCACGGTCTTGATATCGCCCCGCGCA TCGTTGGGGCGGGCCCGCTTGCCGGTGAACTCCAGCGGCGTGCGGACCAGCTTGGCCTCCACGATCTTCGCCTGGACCCA CCGGTCGAGGACCCGTCAGCGATCTACCGGGACGCTGACGTGCTAGTGCTGCTGTCCCAGGTGGAAGGCACGCCCAACGT CGTGCTGGAGGCGCAGGCCTGCGGCCTTCCGGTCGCGGCTTGCCGTGTTGGCGGTGTTGCGGAGGCCCTGCACCGGGACG GCCCCGGTGGCGGCCTGCTTCTGGAGGCGGAGATCGACGCATCCGCCGCCGCCGACGCCATCGCACAATGGTTGCCCACC GCCTTGGCCGCCGATTATCGGCCGCGTGTGCAGTTCATCCTGGACCGGTATTCGAATGCCGCGTTGGTCGACCGCCTGCT TGATCTTTACGGTGCAACACCATGA
Upstream 100 bases:
>100_bases GCCGTCGGTACATATCAAGGTCGTCAACTTCGCGATTGTAGACGACATTGGAGGTCAGCATAGTTGCACCTGCTGCTCCG AATAGGGATTTCATGAACTT
Downstream 100 bases:
>100_bases CCGCTCAATGCCAATGGCTCGCCGTCGCGTCAGATCCGCTGTCGCAGGTGATCACCGAGCATCCGGATTTTGCGGCCCGT GATCATCTGGCCGTGCTCTC
Product: group 1 glycosyl transferase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 754; Mature: 753
Protein sequence:
>754_residues MGNVVSAGEIRRSVVDLCNQGQFFAAHMRLIDNGLDAHTHPSLWELIERRAAEAGDEALAHRVRREILAADVASVDTVLN EARYEIEQGQLGRARALLARTFGEEPENSEARILLGIALAPEDRAAAIHLLDDAQNGSEVETLWAVDAFRDLGELKRAMR LCQTAINRFPMNAMFRNRLGWIAEGVGDFETAIAAATMNLNGDPDTKVRALNRLVRLHRRLGDKPKAMVYAAQLLREAGS PVQKLALARTLGQTDLLYGIVGSLPSLHARGGLAEGEARKVLTFLLDEGEIGLVLFLWREGVPIEADMRRVLMRKGFGEA RADLPRSIEDAMGIRSPEVLFPLLPEASDLPLPSDWSPPLRDTDKIMLVNSVLAAGGAERQFLMLARALVAGGIDPDRLH AALFSLERDRGHGHFEDALRATGIHVHDLSAQDLSSVVMRDHQQDTMALLPGRMRSDVVALYGLAQQLKPAVIHGWQDRA GVASGLVSQLLGIRRTVISARNMRPRKRGDEADWIAHSVYKDLVAMPSVAITANATEGARDYEDWLDLPRGEISILSNAV DETVFFPTPNPPPSDGPIRILGVFRLAENKRPLLWVDTMAALRNRHGLDIAPRIVGAGPLAGELQRRADQLGLHDLRLDP PVEDPSAIYRDADVLVLLSQVEGTPNVVLEAQACGLPVAACRVGGVAEALHRDGPGGGLLLEAEIDASAAADAIAQWLPT ALAADYRPRVQFILDRYSNAALVDRLLDLYGATP
Sequences:
>Translated_754_residues MGNVVSAGEIRRSVVDLCNQGQFFAAHMRLIDNGLDAHTHPSLWELIERRAAEAGDEALAHRVRREILAADVASVDTVLN EARYEIEQGQLGRARALLARTFGEEPENSEARILLGIALAPEDRAAAIHLLDDAQNGSEVETLWAVDAFRDLGELKRAMR LCQTAINRFPMNAMFRNRLGWIAEGVGDFETAIAAATMNLNGDPDTKVRALNRLVRLHRRLGDKPKAMVYAAQLLREAGS PVQKLALARTLGQTDLLYGIVGSLPSLHARGGLAEGEARKVLTFLLDEGEIGLVLFLWREGVPIEADMRRVLMRKGFGEA RADLPRSIEDAMGIRSPEVLFPLLPEASDLPLPSDWSPPLRDTDKIMLVNSVLAAGGAERQFLMLARALVAGGIDPDRLH AALFSLERDRGHGHFEDALRATGIHVHDLSAQDLSSVVMRDHQQDTMALLPGRMRSDVVALYGLAQQLKPAVIHGWQDRA GVASGLVSQLLGIRRTVISARNMRPRKRGDEADWIAHSVYKDLVAMPSVAITANATEGARDYEDWLDLPRGEISILSNAV DETVFFPTPNPPPSDGPIRILGVFRLAENKRPLLWVDTMAALRNRHGLDIAPRIVGAGPLAGELQRRADQLGLHDLRLDP PVEDPSAIYRDADVLVLLSQVEGTPNVVLEAQACGLPVAACRVGGVAEALHRDGPGGGLLLEAEIDASAAADAIAQWLPT ALAADYRPRVQFILDRYSNAALVDRLLDLYGATP >Mature_753_residues GNVVSAGEIRRSVVDLCNQGQFFAAHMRLIDNGLDAHTHPSLWELIERRAAEAGDEALAHRVRREILAADVASVDTVLNE ARYEIEQGQLGRARALLARTFGEEPENSEARILLGIALAPEDRAAAIHLLDDAQNGSEVETLWAVDAFRDLGELKRAMRL CQTAINRFPMNAMFRNRLGWIAEGVGDFETAIAAATMNLNGDPDTKVRALNRLVRLHRRLGDKPKAMVYAAQLLREAGSP VQKLALARTLGQTDLLYGIVGSLPSLHARGGLAEGEARKVLTFLLDEGEIGLVLFLWREGVPIEADMRRVLMRKGFGEAR ADLPRSIEDAMGIRSPEVLFPLLPEASDLPLPSDWSPPLRDTDKIMLVNSVLAAGGAERQFLMLARALVAGGIDPDRLHA ALFSLERDRGHGHFEDALRATGIHVHDLSAQDLSSVVMRDHQQDTMALLPGRMRSDVVALYGLAQQLKPAVIHGWQDRAG VASGLVSQLLGIRRTVISARNMRPRKRGDEADWIAHSVYKDLVAMPSVAITANATEGARDYEDWLDLPRGEISILSNAVD ETVFFPTPNPPPSDGPIRILGVFRLAENKRPLLWVDTMAALRNRHGLDIAPRIVGAGPLAGELQRRADQLGLHDLRLDPP VEDPSAIYRDADVLVLLSQVEGTPNVVLEAQACGLPVAACRVGGVAEALHRDGPGGGLLLEAEIDASAAADAIAQWLPTA LAADYRPRVQFILDRYSNAALVDRLLDLYGATP
Specific function: Slime polysaccharide colanic acid biosynthesis. [C]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1788357, Length=160, Percent_Identity=31.25, Blast_Score=65, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001296 [H]
Pfam domain/function: PF00534 Glycos_transf_1 [H]
EC number: 2.-.-.- [C]
Molecular weight: Translated: 82130; Mature: 81999
Theoretical pI: Translated: 5.46; Mature: 5.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGNVVSAGEIRRSVVDLCNQGQFFAAHMRLIDNGLDAHTHPSLWELIERRAAEAGDEALA CCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHHHH HRVRREILAADVASVDTVLNEARYEIEQGQLGRARALLARTFGEEPENSEARILLGIALA HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEEEC PEDRAAAIHLLDDAQNGSEVETLWAVDAFRDLGELKRAMRLCQTAINRFPMNAMFRNRLG CCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH WIAEGVGDFETAIAAATMNLNGDPDTKVRALNRLVRLHRRLGDKPKAMVYAAQLLREAGS HHHHCCCHHHHHHHHEEEECCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC PVQKLALARTLGQTDLLYGIVGSLPSLHARGGLAEGEARKVLTFLLDEGEIGLVLFLWRE HHHHHHHHHHHCHHHHHHHHHHCCCCHHHCCCCCCCHHHHHHHHHHCCCCCEEEEEEECC GVPIEADMRRVLMRKGFGEARADLPRSIEDAMGIRSPEVLFPLLPEASDLPLPSDWSPPL CCCCHHHHHHHHHHCCCCHHHHHCCHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCCCCC RDTDKIMLVNSVLAAGGAERQFLMLARALVAGGIDPDRLHAALFSLERDRGHGHFEDALR CCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHH ATGIHVHDLSAQDLSSVVMRDHQQDTMALLPGRMRSDVVALYGLAQQLKPAVIHGWQDRA HCCCEEECCCHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHCCCCHHH GVASGLVSQLLGIRRTVISARNMRPRKRGDEADWIAHSVYKDLVAMPSVAITANATEGAR HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCC DYEDWLDLPRGEISILSNAVDETVFFPTPNPPPSDGPIRILGVFRLAENKRPLLWVDTMA HHHHHHCCCCCHHHHHHHHHHCCEECCCCCCCCCCCCEEEEEEEEHHCCCCCEEEHHHHH ALRNRHGLDIAPRIVGAGPLAGELQRRADQLGLHDLRLDPPVEDPSAIYRDADVLVLLSQ HHHCCCCCCCCCHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCHHEEEEEC VEGTPNVVLEAQACGLPVAACRVGGVAEALHRDGPGGGLLLEAEIDASAAADAIAQWLPT CCCCCCEEEEEHHCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHH ALAADYRPRVQFILDRYSNAALVDRLLDLYGATP HHHCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCC >Mature Secondary Structure GNVVSAGEIRRSVVDLCNQGQFFAAHMRLIDNGLDAHTHPSLWELIERRAAEAGDEALA CCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHHHH HRVRREILAADVASVDTVLNEARYEIEQGQLGRARALLARTFGEEPENSEARILLGIALA HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEEEC PEDRAAAIHLLDDAQNGSEVETLWAVDAFRDLGELKRAMRLCQTAINRFPMNAMFRNRLG CCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH WIAEGVGDFETAIAAATMNLNGDPDTKVRALNRLVRLHRRLGDKPKAMVYAAQLLREAGS HHHHCCCHHHHHHHHEEEECCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC PVQKLALARTLGQTDLLYGIVGSLPSLHARGGLAEGEARKVLTFLLDEGEIGLVLFLWRE HHHHHHHHHHHCHHHHHHHHHHCCCCHHHCCCCCCCHHHHHHHHHHCCCCCEEEEEEECC GVPIEADMRRVLMRKGFGEARADLPRSIEDAMGIRSPEVLFPLLPEASDLPLPSDWSPPL CCCCHHHHHHHHHHCCCCHHHHHCCHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCCCCC RDTDKIMLVNSVLAAGGAERQFLMLARALVAGGIDPDRLHAALFSLERDRGHGHFEDALR CCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHH ATGIHVHDLSAQDLSSVVMRDHQQDTMALLPGRMRSDVVALYGLAQQLKPAVIHGWQDRA HCCCEEECCCHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHCCCCHHH GVASGLVSQLLGIRRTVISARNMRPRKRGDEADWIAHSVYKDLVAMPSVAITANATEGAR HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCC DYEDWLDLPRGEISILSNAVDETVFFPTPNPPPSDGPIRILGVFRLAENKRPLLWVDTMA HHHHHHCCCCCHHHHHHHHHHCCEECCCCCCCCCCCCEEEEEEEEHHCCCCCEEEHHHHH ALRNRHGLDIAPRIVGAGPLAGELQRRADQLGLHDLRLDPPVEDPSAIYRDADVLVLLSQ HHHCCCCCCCCCHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCHHEEEEEC VEGTPNVVLEAQACGLPVAACRVGGVAEALHRDGPGGGLLLEAEIDASAAADAIAQWLPT CCCCCCEEEEEHHCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHH ALAADYRPRVQFILDRYSNAALVDRLLDLYGATP HHHCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8248629; 8331073; 11677608; 12644504 [H]