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The map label for this gene is yggB [C]

Identifier: 89056150

GI number: 89056150

Start: 3732929

End: 3734248

Strand: Direct

Name: yggB [C]

Synonym: Jann_3659

Alternate gene names: 89056150

Gene position: 3732929-3734248 (Clockwise)

Preceding gene: 89056149

Following gene: 89056151

Centisome position: 86.45

GC content: 63.11

Gene sequence:

>1320_bases
ATGATCAGAACGCTCCTCGCCATGCTCCTCGCCGCAATGCTCTGCGGGCCGGTCATTGCACAAACGGAGGGCAGCCAGCC
CGATGGCACCATTGCCGTGGAAAGTGACCGGGCCCAGGACTTCGCGACCCGCGACAGGATCATGGATATTCTCGGTCAGC
TTGACGGTTACGGCGATGTGCGCGCCACCGTGTCCAACGGCATCGTCACGCTGCGCGGGACGGTCGTGGATGCGAGCCGG
ATCACCGCGCTCAATGAGTTGGTGGCCCGTGTCGAGGGCGTGGTGGCCATTGAGAATACCGTGTCCGAGAGCACCGACGT
GGTAGAGCGGTTGAACCCGGCCATCGACCGCATGCGAGACCGGCTGGCGCAGGCCGTGGCCTTCTCTCCACTGATCCTTG
TGGCGGTGGGTGCGGGTGTCCTGATGGTCGCCTTCGGTCTTTGGCTGGCGCGCCGCAGCTGGCCCTGGGACACCATCGCG
CCAAATGCGTTCATCGCTGACATCTACCGCCAGATTGTCCGGCTGGCCTTTGTCGTGTTGGGCATTGTGCTTGCGCTCGA
TCTACTGAATGCGACGGCGCTTCTGGGGACCATCCTTGGGGCGGCTGGGATCGTCGGCCTCGCCATCGGCTTTGCCGTGC
GTGACACGGTCGAGAACTTTATCTCGTCCATCATGTTGTCGATCCGCCAGCCGTTTCGCCCAAAAGATCTGGTGGAGATT
GAGGGCGATATGGGGCACGTCATCCGCCTGACCAGCCGCGCGACGATCCTTCTCAGCCTCGACGGAAACCACATCCGCAT
TCCCAATGCGACGGTCTTCAAGGCCAAGATTACGAACTTCACCCGCAACGATGAACGGCGGTTCACTTTCCTTGTGGGTG
TAGACCCCAACGCCGATATCGCGGAGGCGCAGAAGATCATTCTCGCCGCGTTGAAGGAGCTACCGTTTCTTCTGAAGACA
CCCGGCCCCGGTGTCTGGGTCGAGGGCCTCGGAGCCTCGACCATCGACATCACGGCCGCCGGATGGATCAAGCAGCATGA
GACGGGCATCGGCATGGCCAAGGGCGAGGCAATCCGCGTTGTCAAAGCCCGCCTGGAGGAAGCCGGGATAACGCTGCCCG
AGCCCACTTATCGCCTGTTGGGGGCAGACATTGGCGACGCGTCGAAAACGGCCCCGACAGCCGCTGCTCCACGCCCCGCG
CAGGTCGAGGTGCAGCACGTGGGCGCTGATGAGGACGCCGCCCTGCAAGACATCATTCAGGCCGAACGCGACGCCCTGCC
CGATGACGACCTCCTCCGTCAGGAGGCCCCACAAGAATAG

Upstream 100 bases:

>100_bases
CGTCAGACGGACCCAACATGATCCGCCTGGACGATATGGAAGGGGTCCTCGGCACGCTTATGGCGCTGGACAAAGTGGCC
AAGGCCAACCCGGTGCAGCT

Downstream 100 bases:

>100_bases
CACGCATCCGGTCGGGAAAAACGCAATCGGGGTCTTGATCCCTGCCCCGGTGCGTCGTATCCCCTCCGGCACAGTTGGGG
TGTAGCCAAGCGGTAAGGCA

Product: mechanosensitive ion channel MscS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 439; Mature: 439

Protein sequence:

>439_residues
MIRTLLAMLLAAMLCGPVIAQTEGSQPDGTIAVESDRAQDFATRDRIMDILGQLDGYGDVRATVSNGIVTLRGTVVDASR
ITALNELVARVEGVVAIENTVSESTDVVERLNPAIDRMRDRLAQAVAFSPLILVAVGAGVLMVAFGLWLARRSWPWDTIA
PNAFIADIYRQIVRLAFVVLGIVLALDLLNATALLGTILGAAGIVGLAIGFAVRDTVENFISSIMLSIRQPFRPKDLVEI
EGDMGHVIRLTSRATILLSLDGNHIRIPNATVFKAKITNFTRNDERRFTFLVGVDPNADIAEAQKIILAALKELPFLLKT
PGPGVWVEGLGASTIDITAAGWIKQHETGIGMAKGEAIRVVKARLEEAGITLPEPTYRLLGADIGDASKTAPTAAAPRPA
QVEVQHVGADEDAALQDIIQAERDALPDDDLLRQEAPQE

Sequences:

>Translated_439_residues
MIRTLLAMLLAAMLCGPVIAQTEGSQPDGTIAVESDRAQDFATRDRIMDILGQLDGYGDVRATVSNGIVTLRGTVVDASR
ITALNELVARVEGVVAIENTVSESTDVVERLNPAIDRMRDRLAQAVAFSPLILVAVGAGVLMVAFGLWLARRSWPWDTIA
PNAFIADIYRQIVRLAFVVLGIVLALDLLNATALLGTILGAAGIVGLAIGFAVRDTVENFISSIMLSIRQPFRPKDLVEI
EGDMGHVIRLTSRATILLSLDGNHIRIPNATVFKAKITNFTRNDERRFTFLVGVDPNADIAEAQKIILAALKELPFLLKT
PGPGVWVEGLGASTIDITAAGWIKQHETGIGMAKGEAIRVVKARLEEAGITLPEPTYRLLGADIGDASKTAPTAAAPRPA
QVEVQHVGADEDAALQDIIQAERDALPDDDLLRQEAPQE
>Mature_439_residues
MIRTLLAMLLAAMLCGPVIAQTEGSQPDGTIAVESDRAQDFATRDRIMDILGQLDGYGDVRATVSNGIVTLRGTVVDASR
ITALNELVARVEGVVAIENTVSESTDVVERLNPAIDRMRDRLAQAVAFSPLILVAVGAGVLMVAFGLWLARRSWPWDTIA
PNAFIADIYRQIVRLAFVVLGIVLALDLLNATALLGTILGAAGIVGLAIGFAVRDTVENFISSIMLSIRQPFRPKDLVEI
EGDMGHVIRLTSRATILLSLDGNHIRIPNATVFKAKITNFTRNDERRFTFLVGVDPNADIAEAQKIILAALKELPFLLKT
PGPGVWVEGLGASTIDITAAGWIKQHETGIGMAKGEAIRVVKARLEEAGITLPEPTYRLLGADIGDASKTAPTAAAPRPA
QVEVQHVGADEDAALQDIIQAERDALPDDDLLRQEAPQE

Specific function: Unknown

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mscS (TC 1.A.23) family [H]

Homologues:

Organism=Escherichia coli, GI1789291, Length=215, Percent_Identity=28.3720930232558, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI1786670, Length=139, Percent_Identity=31.6546762589928, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI2367355, Length=181, Percent_Identity=24.8618784530387, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR011066
- InterPro:   IPR006685
- InterPro:   IPR006686
- InterPro:   IPR011014 [H]

Pfam domain/function: PF00924 MS_channel [H]

EC number: NA

Molecular weight: Translated: 47091; Mature: 47091

Theoretical pI: Translated: 4.65; Mature: 4.65

Prosite motif: PS50914 BON

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRTLLAMLLAAMLCGPVIAQTEGSQPDGTIAVESDRAQDFATRDRIMDILGQLDGYGDV
CHHHHHHHHHHHHHHCCHHCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCE
RATVSNGIVTLRGTVVDASRITALNELVARVEGVVAIENTVSESTDVVERLNPAIDRMRD
EEECCCCEEEEEEEEECHHHHHHHHHHHHHHHCCEEEHHHHHHHHHHHHHHHHHHHHHHH
RLAQAVAFSPLILVAVGAGVLMVAFGLWLARRSWPWDTIAPNAFIADIYRQIVRLAFVVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
GIVLALDLLNATALLGTILGAAGIVGLAIGFAVRDTVENFISSIMLSIRQPFRPKDLVEI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEE
EGDMGHVIRLTSRATILLSLDGNHIRIPNATVFKAKITNFTRNDERRFTFLVGVDPNADI
CCCCCEEEEEECCEEEEEEECCCEEECCCCEEEEEECCCCCCCCCCEEEEEEECCCCCCH
AEAQKIILAALKELPFLLKTPGPGVWVEGLGASTIDITAAGWIKQHETGIGMAKGEAIRV
HHHHHHHHHHHHHCCEEEECCCCCEEEECCCCCEEEEEEHHHHHHHCCCCCCCCCHHHHH
VKARLEEAGITLPEPTYRLLGADIGDASKTAPTAAAPRPAQVEVQHVGADEDAALQDIIQ
HHHHHHHCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHH
AERDALPDDDLLRQEAPQE
HHHHCCCCHHHHHHCCCCC
>Mature Secondary Structure
MIRTLLAMLLAAMLCGPVIAQTEGSQPDGTIAVESDRAQDFATRDRIMDILGQLDGYGDV
CHHHHHHHHHHHHHHCCHHCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCE
RATVSNGIVTLRGTVVDASRITALNELVARVEGVVAIENTVSESTDVVERLNPAIDRMRD
EEECCCCEEEEEEEEECHHHHHHHHHHHHHHHCCEEEHHHHHHHHHHHHHHHHHHHHHHH
RLAQAVAFSPLILVAVGAGVLMVAFGLWLARRSWPWDTIAPNAFIADIYRQIVRLAFVVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
GIVLALDLLNATALLGTILGAAGIVGLAIGFAVRDTVENFISSIMLSIRQPFRPKDLVEI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEE
EGDMGHVIRLTSRATILLSLDGNHIRIPNATVFKAKITNFTRNDERRFTFLVGVDPNADI
CCCCCEEEEEECCEEEEEEECCCEEECCCCEEEEEECCCCCCCCCCEEEEEEECCCCCCH
AEAQKIILAALKELPFLLKTPGPGVWVEGLGASTIDITAAGWIKQHETGIGMAKGEAIRV
HHHHHHHHHHHHHCCEEEECCCCCEEEECCCCCEEEEEEHHHHHHHCCCCCCCCCHHHHH
VKARLEEAGITLPEPTYRLLGADIGDASKTAPTAAAPRPAQVEVQHVGADEDAALQDIIQ
HHHHHHHCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHH
AERDALPDDDLLRQEAPQE
HHHHCCCCHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]