Definition Jannaschia sp. CCS1 chromosome, complete genome.
Accession NC_007802
Length 4,317,977

Click here to switch to the map view.

The map label for this gene is 89056079

Identifier: 89056079

GI number: 89056079

Start: 3665762

End: 3666025

Strand: Direct

Name: 89056079

Synonym: Jann_3588

Alternate gene names: NA

Gene position: 3665762-3666025 (Clockwise)

Preceding gene: 89056078

Following gene: 89056080

Centisome position: 84.9

GC content: 62.88

Gene sequence:

>264_bases
ATGGCATATCAACTTCCAGACCACCTTACCCCTGAAATCTGGCTGAGCCAGGTCCTGTCATCTCGGGAAGCCCAGGGCGG
CGGCATCGTGAAGCGACAGGTCCGGGATGTGGAGCGGCTCGTGGGACGCGACGCGTTTCTGGAAGAGGCAGAGCGGCGCG
GGTTCCAGGTGGTGCAGAACAACCGCCATTTCGTGATCTTCTGCAACGCGTTGCCGATCCGCCGGGTCCGGGCGGATTGC
GGGCTTTCGAAAGCCCGCCCTTAG

Upstream 100 bases:

>100_bases
CCGCCATTGAAAGCGCGCCGGGTGTGAAAGATGCGGCGCGGATGCAGGCTTTTTCGGCGGCGTTAACTGACGGATAACCA
AGTCGCGCCTAGGCTACGGC

Downstream 100 bases:

>100_bases
GCCCGCGCGCGCGGGCCGTTCACGCGGTTTGAAAACCGCGTGCGTCAAGGCCTTTCGAAAGGCCTTCCCCTTGCCCCGCC
CACATCCGCGCGCTACCCCT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 87; Mature: 86

Protein sequence:

>87_residues
MAYQLPDHLTPEIWLSQVLSSREAQGGGIVKRQVRDVERLVGRDAFLEEAERRGFQVVQNNRHFVIFCNALPIRRVRADC
GLSKARP

Sequences:

>Translated_87_residues
MAYQLPDHLTPEIWLSQVLSSREAQGGGIVKRQVRDVERLVGRDAFLEEAERRGFQVVQNNRHFVIFCNALPIRRVRADC
GLSKARP
>Mature_86_residues
AYQLPDHLTPEIWLSQVLSSREAQGGGIVKRQVRDVERLVGRDAFLEEAERRGFQVVQNNRHFVIFCNALPIRRVRADCG
LSKARP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 9973; Mature: 9841

Theoretical pI: Translated: 10.23; Mature: 10.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYQLPDHLTPEIWLSQVLSSREAQGGGIVKRQVRDVERLVGRDAFLEEAERRGFQVVQN
CCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCHHEEEC
NRHFVIFCNALPIRRVRADCGLSKARP
CCCEEEEECCCCHHHHHHHCCCCCCCC
>Mature Secondary Structure 
AYQLPDHLTPEIWLSQVLSSREAQGGGIVKRQVRDVERLVGRDAFLEEAERRGFQVVQN
CCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCHHEEEC
NRHFVIFCNALPIRRVRADCGLSKARP
CCCEEEEECCCCHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA