| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
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The map label for this gene is 89055825
Identifier: 89055825
GI number: 89055825
Start: 3384045
End: 3385160
Strand: Direct
Name: 89055825
Synonym: Jann_3334
Alternate gene names: NA
Gene position: 3384045-3385160 (Clockwise)
Preceding gene: 89055824
Following gene: 89055826
Centisome position: 78.37
GC content: 69.18
Gene sequence:
>1116_bases GTGTCTGGAAGAACCGTGTCGCTTAAGGCCCGCCTGCTGGCGCGGATCGCGCGGTTGGGGCCGATATCGCTGGCCGATTA CATGGCCGAATGCCTGCACGACCCGCAATTTGGCTATTACGCCACCCGCGATCCCCTGGGGCGGGGGGGCGATTTCATCA CCGCGCCCGAGATATCTCAGATGTTCGGAGAGCTGATCGGCCTATGGCTGGCGCAGGTCTGGATGGATCAGGGCGGCGGG GCGGCCGCACTGGTGGAGTTGGGCCCGGGGCGGGGCACGTTGATGGCCGACGTGATGCGCGCCACGCGCGGCGTGCCGGG CTTCCACGACGCGGTCACGGTGCATCTGGTGGAGGCGTCCCCGGTGTTGCGCGCCATGCAGACAGAGGCATTGGCGGCAT ACGCGCCGAGGTTCCACGACAATCTGGCTGACGTGCCGGAAGGGCCAATCCTGCTGGTGGCCAACGAGTTCTTCGACGCG CTGCCGATCCGGCAATTCCAGATGAGCGATGCAGGCGATTGGCAGGAGCGGCAGATTGGGGCATCCGACGGCGCGCTGAT CTGGGGCCTCGCACCCCCGGCCCCGCTGGATGTCCGTGACGGATTTGCGCCCGGTATGCCCGGCATGATCGTGGAGACCT GCGCCCCGGCAGAGGCGATTGCCGCCGAGATCGGGCGACGCGTGGCCCAGGGCGGCGCGGCGCTGATCGTGGATTACGGC GATTGGCACAGCGCGGGCGATACGTTTCAGGCGCTTGCCAAGCACGCCTACACGGACCCGTTGGACGCGCCGGGAGAGGC CGATTTGACCGCCCATGTGGCGTTTGCCCCCATCGCGCGCGCGGCCCGGGCGGCGTCTGGCGTGGTCGCCTCGGGGCTGA CACGGCAGGGGATGTTCCTAGAGCGGCTTGGCATCACGGCACGGGCACAGGCGCTGGCGCGGGGCCTGGACGGCACGGCG CTTGACACCCACATCGCCGCCCACCGCCGCTTGACGCATGGGGATGAAATGGGAACTCTGTTCAAGGTGCTGGCGCTGAC CCCGGAGGGCGCGCCGCCACCGCCCGCCATAGACCCAGCCCCTGCCCCATCCGCTGACCCGGAGCCCGCCCGATGA
Upstream 100 bases:
>100_bases TACGCTGTGGCGCTGTCGCCCAATGTGGGGCTGACGATGGGGCAAATTCTGTGTGTGCCAATGGTGATTGCCGGATTCTG GTTGGTGGTACGGGCCCACC
Downstream 100 bases:
>100_bases CCCTCTCGCCCCTGACATCCCCGCTTCTGGAGGGCGTGACCCATGGGTTTTTCACCCGTGCGGGAGGGGCATCGACGGGG ATCTACGAGGGGTTGAACTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 371; Mature: 370
Protein sequence:
>371_residues MSGRTVSLKARLLARIARLGPISLADYMAECLHDPQFGYYATRDPLGRGGDFITAPEISQMFGELIGLWLAQVWMDQGGG AAALVELGPGRGTLMADVMRATRGVPGFHDAVTVHLVEASPVLRAMQTEALAAYAPRFHDNLADVPEGPILLVANEFFDA LPIRQFQMSDAGDWQERQIGASDGALIWGLAPPAPLDVRDGFAPGMPGMIVETCAPAEAIAAEIGRRVAQGGAALIVDYG DWHSAGDTFQALAKHAYTDPLDAPGEADLTAHVAFAPIARAARAASGVVASGLTRQGMFLERLGITARAQALARGLDGTA LDTHIAAHRRLTHGDEMGTLFKVLALTPEGAPPPPAIDPAPAPSADPEPAR
Sequences:
>Translated_371_residues MSGRTVSLKARLLARIARLGPISLADYMAECLHDPQFGYYATRDPLGRGGDFITAPEISQMFGELIGLWLAQVWMDQGGG AAALVELGPGRGTLMADVMRATRGVPGFHDAVTVHLVEASPVLRAMQTEALAAYAPRFHDNLADVPEGPILLVANEFFDA LPIRQFQMSDAGDWQERQIGASDGALIWGLAPPAPLDVRDGFAPGMPGMIVETCAPAEAIAAEIGRRVAQGGAALIVDYG DWHSAGDTFQALAKHAYTDPLDAPGEADLTAHVAFAPIARAARAASGVVASGLTRQGMFLERLGITARAQALARGLDGTA LDTHIAAHRRLTHGDEMGTLFKVLALTPEGAPPPPAIDPAPAPSADPEPAR >Mature_370_residues SGRTVSLKARLLARIARLGPISLADYMAECLHDPQFGYYATRDPLGRGGDFITAPEISQMFGELIGLWLAQVWMDQGGGA AALVELGPGRGTLMADVMRATRGVPGFHDAVTVHLVEASPVLRAMQTEALAAYAPRFHDNLADVPEGPILLVANEFFDAL PIRQFQMSDAGDWQERQIGASDGALIWGLAPPAPLDVRDGFAPGMPGMIVETCAPAEAIAAEIGRRVAQGGAALIVDYGD WHSAGDTFQALAKHAYTDPLDAPGEADLTAHVAFAPIARAARAASGVVASGLTRQGMFLERLGITARAQALARGLDGTAL DTHIAAHRRLTHGDEMGTLFKVLALTPEGAPPPPAIDPAPAPSADPEPAR
Specific function: Unknown
COG id: COG1565
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI21396487, Length=378, Percent_Identity=37.3015873015873, Blast_Score=197, Evalue=1e-50, Organism=Homo sapiens, GI145701028, Length=344, Percent_Identity=29.6511627906977, Blast_Score=108, Evalue=9e-24, Organism=Caenorhabditis elegans, GI193211224, Length=381, Percent_Identity=34.1207349081365, Blast_Score=179, Evalue=2e-45, Organism=Drosophila melanogaster, GI24645885, Length=375, Percent_Identity=38.6666666666667, Blast_Score=215, Evalue=5e-56,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38966; Mature: 38835
Theoretical pI: Translated: 4.85; Mature: 4.85
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGRTVSLKARLLARIARLGPISLADYMAECLHDPQFGYYATRDPLGRGGDFITAPEISQ CCCCEEHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCEECCCCCCCCCCEECCHHHHH MFGELIGLWLAQVWMDQGGGAAALVELGPGRGTLMADVMRATRGVPGFHDAVTVHLVEAS HHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCC PVLRAMQTEALAAYAPRFHDNLADVPEGPILLVANEFFDALPIRQFQMSDAGDWQERQIG HHHHHHHHHHHHHHCCHHHCCCCCCCCCCEEEEECHHHHHCCCHHEECCCCCCHHHHHCC ASDGALIWGLAPPAPLDVRDGFAPGMPGMIVETCAPAEAIAAEIGRRVAQGGAALIVDYG CCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHCCCCEEEEECC DWHSAGDTFQALAKHAYTDPLDAPGEADLTAHVAFAPIARAARAASGVVASGLTRQGMFL CCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCHHH ERLGITARAQALARGLDGTALDTHIAAHRRLTHGDEMGTLFKVLALTPEGAPPPPAIDPA HHHCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC PAPSADPEPAR CCCCCCCCCCC >Mature Secondary Structure SGRTVSLKARLLARIARLGPISLADYMAECLHDPQFGYYATRDPLGRGGDFITAPEISQ CCCEEHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCEECCCCCCCCCCEECCHHHHH MFGELIGLWLAQVWMDQGGGAAALVELGPGRGTLMADVMRATRGVPGFHDAVTVHLVEAS HHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCC PVLRAMQTEALAAYAPRFHDNLADVPEGPILLVANEFFDALPIRQFQMSDAGDWQERQIG HHHHHHHHHHHHHHCCHHHCCCCCCCCCCEEEEECHHHHHCCCHHEECCCCCCHHHHHCC ASDGALIWGLAPPAPLDVRDGFAPGMPGMIVETCAPAEAIAAEIGRRVAQGGAALIVDYG CCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHCCCCEEEEECC DWHSAGDTFQALAKHAYTDPLDAPGEADLTAHVAFAPIARAARAASGVVASGLTRQGMFL CCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCHHH ERLGITARAQALARGLDGTALDTHIAAHRRLTHGDEMGTLFKVLALTPEGAPPPPAIDPA HHHCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC PAPSADPEPAR CCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA