| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
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The map label for this gene is 89055660
Identifier: 89055660
GI number: 89055660
Start: 3208358
End: 3209053
Strand: Direct
Name: 89055660
Synonym: Jann_3169
Alternate gene names: NA
Gene position: 3208358-3209053 (Clockwise)
Preceding gene: 89055656
Following gene: 89055668
Centisome position: 74.3
GC content: 61.49
Gene sequence:
>696_bases ATGGCGGATGTTTCTCCCAACGGCGATAGGTTTATCGAGCGCATTGAAAGCCCCCGCACCGGGCATCACCACGACGCTTC CCAGCGCCAGCGTTTTCCGCTACCGTTGTCCAAAATAATATGGACGTTGAGCAGTCCCATGCAGAAATGGATCACCCTCG CCGCCGCTGGCGGTCTTGCGGCGTGTCAGTTGCCCCCCCCCGAGGACAGTTTCACCTCGGTCATAGATCCGGTTATCAAC TCAGGTGCCGCTGGCGTGCAGGTCAGTCGTGGTGTGGGTCCGGCCAATGCGGACCCTCAAAGCTGCTATGGCCGTGAAAT CGAGCCCGCGGTGATTGAGACGGTGACCGAACAGCTGATGGTCGAGCCGGAAGAGCTGGACCGCAACGGCAACATCCGCC GCCCCGCTGTTTTCGTCACAGCGACTGAGCAGCGCATTGTCGAGGACCGGACAGAGATCTGGTTTGAAACACCCTGCGAG ATGGAGAGCGACGCAGAATTCGTTGCCAACCTGCAAAGAGCCCTCACGGCCCGGGGGCATTATGATGGCGCGGTCACCGG CGAGATGAACCGCGCCACCGTGCGCGCCGTGCGCGCCTACCAACAGCCGCAGGGCCTCGACAGCGGTGTGTTGTCACTGG CCGCCGCCCGTCAATTGGGTCTGTCGGTCTGGGATCCTGATTTATCAGGCGGATAG
Upstream 100 bases:
>100_bases GTATCAACCCTATCGCCGCGCGGCACGTCCCGGCTGGCCTTTTCCTGTCGCCAGGCACAGCTACAGCGTGCCGGGCGGCG CCCATATGGCGGTATAGCCG
Downstream 100 bases:
>100_bases ATTGCCGCCCAAGACCGCATAATAAAAGCCCCCGGTCGCCATCCAGCGCCGGGGGCTTTGTGTTTCGTGCCACGTCTCAG GTCACTCCTTGATGCCCAAG
Product: peptidoglycan binding domain-containing protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 231; Mature: 230
Protein sequence:
>231_residues MADVSPNGDRFIERIESPRTGHHHDASQRQRFPLPLSKIIWTLSSPMQKWITLAAAGGLAACQLPPPEDSFTSVIDPVIN SGAAGVQVSRGVGPANADPQSCYGREIEPAVIETVTEQLMVEPEELDRNGNIRRPAVFVTATEQRIVEDRTEIWFETPCE MESDAEFVANLQRALTARGHYDGAVTGEMNRATVRAVRAYQQPQGLDSGVLSLAAARQLGLSVWDPDLSGG
Sequences:
>Translated_231_residues MADVSPNGDRFIERIESPRTGHHHDASQRQRFPLPLSKIIWTLSSPMQKWITLAAAGGLAACQLPPPEDSFTSVIDPVIN SGAAGVQVSRGVGPANADPQSCYGREIEPAVIETVTEQLMVEPEELDRNGNIRRPAVFVTATEQRIVEDRTEIWFETPCE MESDAEFVANLQRALTARGHYDGAVTGEMNRATVRAVRAYQQPQGLDSGVLSLAAARQLGLSVWDPDLSGG >Mature_230_residues ADVSPNGDRFIERIESPRTGHHHDASQRQRFPLPLSKIIWTLSSPMQKWITLAAAGGLAACQLPPPEDSFTSVIDPVINS GAAGVQVSRGVGPANADPQSCYGREIEPAVIETVTEQLMVEPEELDRNGNIRRPAVFVTATEQRIVEDRTEIWFETPCEM ESDAEFVANLQRALTARGHYDGAVTGEMNRATVRAVRAYQQPQGLDSGVLSLAAARQLGLSVWDPDLSGG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25117; Mature: 24986
Theoretical pI: Translated: 4.56; Mature: 4.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADVSPNGDRFIERIESPRTGHHHDASQRQRFPLPLSKIIWTLSSPMQKWITLAAAGGLA CCCCCCCHHHHHHHHCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEE ACQLPPPEDSFTSVIDPVINSGAAGVQVSRGVGPANADPQSCYGREIEPAVIETVTEQLM ECCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHCCCCCCHHHHHHHHHHHH VEPEELDRNGNIRRPAVFVTATEQRIVEDRTEIWFETPCEMESDAEFVANLQRALTARGH CCHHHHCCCCCCCCCEEEEEEHHHHHHHHHHHHEECCCCCCCCCHHHHHHHHHHHHHCCC YDGAVTGEMNRATVRAVRAYQQPQGLDSGVLSLAAARQLGLSVWDPDLSGG CCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCEEECCCCCCC >Mature Secondary Structure ADVSPNGDRFIERIESPRTGHHHDASQRQRFPLPLSKIIWTLSSPMQKWITLAAAGGLA CCCCCCHHHHHHHHCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEE ACQLPPPEDSFTSVIDPVINSGAAGVQVSRGVGPANADPQSCYGREIEPAVIETVTEQLM ECCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHCCCCCCHHHHHHHHHHHH VEPEELDRNGNIRRPAVFVTATEQRIVEDRTEIWFETPCEMESDAEFVANLQRALTARGH CCHHHHCCCCCCCCCEEEEEEHHHHHHHHHHHHEECCCCCCCCCHHHHHHHHHHHHHCCC YDGAVTGEMNRATVRAVRAYQQPQGLDSGVLSLAAARQLGLSVWDPDLSGG CCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA