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The map label for this gene is ypdF [C]

Identifier: 89055103

GI number: 89055103

Start: 2628098

End: 2629258

Strand: Reverse

Name: ypdF [C]

Synonym: Jann_2612

Alternate gene names: 89055103

Gene position: 2629258-2628098 (Counterclockwise)

Preceding gene: 89055104

Following gene: 89055101

Centisome position: 60.89

GC content: 61.07

Gene sequence:

>1161_bases
ATGTTGCCCTTTGAAGGCGCGGAATATGATGCGCGCCTGAAGGGCCTGCGCGCCCGGATGTCTGACGCAGGCGTGGAGGC
TTGCGTTTTCACGTCGATGCACAACATCGCCTACTATTCGGGTTTTCTCTGTTGTGCGTTTGGACGGCCTTATGCGCTTG
TCGTGACGCCCACCGACAGCGTAACGATCAGCGCCGGTATCGATGCGGCGCAACCCTGGCGGCGCAGCCACGGCGACGCG
ATCACCTACACCGATTGGCAGCGAAACAACTACTGGCGCGCGATCTTGTCGGTGACGGGTGCGGGCCGTGCCGTTGGGTT
TGAGGGCGACCACATCTCGGTCGTGCAAAAGATGTTGCTGGAGGAGTTTTTGTCCCCCTCCCGCAGTATCGACATCGCCC
CGGCCACCATGCAGCAACGGATGCACAAATCGCCTGCCGAACTTGCGCTGATCCGTCATGGAGCCAATGTCGCTGATGTG
GGCGGCTATGCCATCAGGGAGGCCGTGAAGATCGGCGCGCGGGAAATCGACGTGGCCATGGCCGGGCGCGACGCGATGGA
GTTGGAGATTGCCCGCCGCTTCCCCGATGCCGAATACCGCGACACCTGGGTCTGGTTCCAGTCGGGCATCAACACCGACG
GTGCCCATAACCCGGTCACGGCGCGGGCCTGTGAGCGCGGCGATATCCTGTCGCTCAACACCTTTCCGATGATCTCGGGC
TACTACACGGCGCTGGAGCGGACGATGTTCGTGGAGGAGTGTGATGCGGACAGTTTGAAGATCTGGGAAGCCAATATCGC
CGCCCATGAATATGGGATGAGCCTGCTCAAGCCCGGTATGTCCTGTGCGGACGTCACCCATAAAATCAACGAAGTCTTTG
CTGAACGTGACCTGCTGCAATACCGCACCTTTGGCTACGGCCACTCCTTCGGGGTGCTGTCGCATTATTATGGCCGGGAG
GCCGGCCTTGAGCTGCGCGAAGACGTCGACACGGTTCTGGAGCCGGGCATGGTCATCTCCATGGAGCCGATGCTGACGAT
CCCCGAAGGCCAGCCCGGGGCAGGTGGCTACCGCGAACATGACATCCTGATCATCACCGAGGATGGGAACGAGAACATCA
CCGGCTATCCCTATGGGCCGGAGTTCAACGTGGTGGGCTAG

Upstream 100 bases:

>100_bases
GCGGCTGAGGGAGAGTGCGCCCCGGCTTTGCGTCGACCTGATGAGAAGGATCATGTCGATGACCCGTCCCGATTTTTACC
GTTTTCACCAAGGTGACCGG

Downstream 100 bases:

>100_bases
GGTGGTCTGGCCGCGCGTGTCCGTTACTCGGGCGCGCGCGTCGCCTCCCGATACCAGGCCACGATCAAGGCCCGACGCTC
GGGCGTCATGGTAGAGATCG

Product: peptidase M24

Products: NA

Alternate protein names: Creatine amidinohydrolase [H]

Number of amino acids: Translated: 386; Mature: 386

Protein sequence:

>386_residues
MLPFEGAEYDARLKGLRARMSDAGVEACVFTSMHNIAYYSGFLCCAFGRPYALVVTPTDSVTISAGIDAAQPWRRSHGDA
ITYTDWQRNNYWRAILSVTGAGRAVGFEGDHISVVQKMLLEEFLSPSRSIDIAPATMQQRMHKSPAELALIRHGANVADV
GGYAIREAVKIGAREIDVAMAGRDAMELEIARRFPDAEYRDTWVWFQSGINTDGAHNPVTARACERGDILSLNTFPMISG
YYTALERTMFVEECDADSLKIWEANIAAHEYGMSLLKPGMSCADVTHKINEVFAERDLLQYRTFGYGHSFGVLSHYYGRE
AGLELREDVDTVLEPGMVISMEPMLTIPEGQPGAGGYREHDILIITEDGNENITGYPYGPEFNVVG

Sequences:

>Translated_386_residues
MLPFEGAEYDARLKGLRARMSDAGVEACVFTSMHNIAYYSGFLCCAFGRPYALVVTPTDSVTISAGIDAAQPWRRSHGDA
ITYTDWQRNNYWRAILSVTGAGRAVGFEGDHISVVQKMLLEEFLSPSRSIDIAPATMQQRMHKSPAELALIRHGANVADV
GGYAIREAVKIGAREIDVAMAGRDAMELEIARRFPDAEYRDTWVWFQSGINTDGAHNPVTARACERGDILSLNTFPMISG
YYTALERTMFVEECDADSLKIWEANIAAHEYGMSLLKPGMSCADVTHKINEVFAERDLLQYRTFGYGHSFGVLSHYYGRE
AGLELREDVDTVLEPGMVISMEPMLTIPEGQPGAGGYREHDILIITEDGNENITGYPYGPEFNVVG
>Mature_386_residues
MLPFEGAEYDARLKGLRARMSDAGVEACVFTSMHNIAYYSGFLCCAFGRPYALVVTPTDSVTISAGIDAAQPWRRSHGDA
ITYTDWQRNNYWRAILSVTGAGRAVGFEGDHISVVQKMLLEEFLSPSRSIDIAPATMQQRMHKSPAELALIRHGANVADV
GGYAIREAVKIGAREIDVAMAGRDAMELEIARRFPDAEYRDTWVWFQSGINTDGAHNPVTARACERGDILSLNTFPMISG
YYTALERTMFVEECDADSLKIWEANIAAHEYGMSLLKPGMSCADVTHKINEVFAERDLLQYRTFGYGHSFGVLSHYYGRE
AGLELREDVDTVLEPGMVISMEPMLTIPEGQPGAGGYREHDILIITEDGNENITGYPYGPEFNVVG

Specific function: Unknown

COG id: COG0006

COG function: function code E; Xaa-Pro aminopeptidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M24 family. Creatinase subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788728, Length=286, Percent_Identity=26.5734265734266, Blast_Score=86, Evalue=5e-18,
Organism=Escherichia coli, GI1789275, Length=284, Percent_Identity=26.4084507042254, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000587
- InterPro:   IPR000994 [H]

Pfam domain/function: PF01321 Creatinase_N; PF00557 Peptidase_M24 [H]

EC number: =3.5.3.3 [H]

Molecular weight: Translated: 42722; Mature: 42722

Theoretical pI: Translated: 4.70; Mature: 4.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPFEGAEYDARLKGLRARMSDAGVEACVFTSMHNIAYYSGFLCCAFGRPYALVVTPTDS
CCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCEEEEECCCCEEEEEECCCC
VTISAGIDAAQPWRRSHGDAITYTDWQRNNYWRAILSVTGAGRAVGFEGDHISVVQKMLL
EEEECCCCCCCCHHHCCCCEEEEECCCCCCEEEEEEEECCCCEEECCCCCHHHHHHHHHH
EEFLSPSRSIDIAPATMQQRMHKSPAELALIRHGANVADVGGYAIREAVKIGAREIDVAM
HHHCCCCCCEECCHHHHHHHHCCCHHHEEEECCCCCEECCCHHHHHHHHHHCCCEEEEEE
AGRDAMELEIARRFPDAEYRDTWVWFQSGINTDGAHNPVTARACERGDILSLNTFPMISG
CCCCHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCHHHCCCCCEEEECCCCHHHH
YYTALERTMFVEECDADSLKIWEANIAAHEYGMSLLKPGMSCADVTHKINEVFAERDLLQ
HHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHCHHHHCCCCHHHHHHHHHHHHHHHHHHHH
YRTFGYGHSFGVLSHYYGREAGLELREDVDTVLEPGMVISMEPMLTIPEGQPGAGGYREH
HHHCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEECCEEECCCCCCCCCCCCCC
DILIITEDGNENITGYPYGPEFNVVG
EEEEEEECCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLPFEGAEYDARLKGLRARMSDAGVEACVFTSMHNIAYYSGFLCCAFGRPYALVVTPTDS
CCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCEEEEECCCCEEEEEECCCC
VTISAGIDAAQPWRRSHGDAITYTDWQRNNYWRAILSVTGAGRAVGFEGDHISVVQKMLL
EEEECCCCCCCCHHHCCCCEEEEECCCCCCEEEEEEEECCCCEEECCCCCHHHHHHHHHH
EEFLSPSRSIDIAPATMQQRMHKSPAELALIRHGANVADVGGYAIREAVKIGAREIDVAM
HHHCCCCCCEECCHHHHHHHHCCCHHHEEEECCCCCEECCCHHHHHHHHHHCCCEEEEEE
AGRDAMELEIARRFPDAEYRDTWVWFQSGINTDGAHNPVTARACERGDILSLNTFPMISG
CCCCHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCHHHCCCCCEEEECCCCHHHH
YYTALERTMFVEECDADSLKIWEANIAAHEYGMSLLKPGMSCADVTHKINEVFAERDLLQ
HHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHCHHHHCCCCHHHHHHHHHHHHHHHHHHHH
YRTFGYGHSFGVLSHYYGREAGLELREDVDTVLEPGMVISMEPMLTIPEGQPGAGGYREH
HHHCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEECCEEECCCCCCCCCCCCCC
DILIITEDGNENITGYPYGPEFNVVG
EEEEEEECCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1368564 [H]