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The map label for this gene is xylR [H]

Identifier: 89055080

GI number: 89055080

Start: 2598899

End: 2600068

Strand: Direct

Name: xylR [H]

Synonym: Jann_2589

Alternate gene names: 89055080

Gene position: 2598899-2600068 (Clockwise)

Preceding gene: 89055072

Following gene: 89055081

Centisome position: 60.19

GC content: 68.29

Gene sequence:

>1170_bases
ATGGCCAGTGCCTCGCCCCCTCCCGGCTCCAATGCCCTTCGCAGTCGAACCTACAACCGTGGGCTGGTTCTGGGTCATCT
GCGGCGGGAGGGAGAGGCCGGGCGCGCCGAGATCGCGCGGGCTTCGCGGCTCAGCATTCAAGCGGTCAGCAACATCATCC
AAGACCTCGTGGAGGGAGGCTGGGTGGTGGAAGCGGGCAAGCGCGAGGGACAGCGCGGCCTGCCCGCCGTCACCTACGCG
CTCAGCAGTGGCACGCATATCGCGATGGGGGTGGAGATCCGACCCGATGCCGTTCTGGCCGCATGGATTGATCTTGGGGG
GCATGTGCTGCACCGGGACCGGCTGGCGCTTCCGTCGGCCCGGCCTGAGCATGTGGGGCCGCTGATCGCGCAACTTCCCA
CGCGGGGCGACGCGGCGGGTGTCCCCCATAGCGCTGTTTTCGGCGCCGGTGTGGTGATGCCGGGACCGATTGGGCAAACG
GGCCTGTCAGACCTGACGACGCAATTGCCCGGTTGGGGCGACGTGTCCCCGGAGACGGTGTTGCGGGACGCCCTCGGTGT
GCCCGTGACGCTGGAAAACGACGCCAACGCCGCCGCCATGGCCGAACGCATTCTGGGCGCGGCGCAAGGGCTTGGCACCT
TTGCCTGCCTCTATTTCGGGACCGGGTTAGGCCTTGGTCTGGTGATCAACGGAGAGGTCTTCCCCGGCGCGTTCGGCAAT
GCCGGGGAAATCGGTCATATCCCCGTCGTCTCATCCAACGGTGCGTGCAGTCTGGAGACGTTGGCCAGTCGCGTGTCCCT
CGTCCGGGCGCTGGAAGCCGATGGGATCACTGCGCGCACTGTGGATGATCTGGCCCTGCAACATCAGGCCCGCCCCCCCG
CGATGGAGGCTTGGCTGCAAAGTGCGGCTGGCGCGCTGAGCCCCGCCGTGCAGATATTGGAAAACCTCATTGACCCGGAG
GCCATCGTGATGACCGGCGCCATGCCCCCTGCCCTGCTGGACGAACTGGCGGGCCGCGTCACGCTGCCGGAGCGCTCGGT
CTCCAACCGCGCCGACCGGGCCCGCCCCCGCCTGATTGCGGGCACCGCGGGCCGCATGGCCGCGACCCTTGGGGCGGCGG
CGCTGGTCGTGAATTCCGCCCTCTCGCCCCGTCTTATGGACACACAATAG

Upstream 100 bases:

>100_bases
ACGTTATTTTATGGGGGCCCGAACTCTCTTGGCCGGTGCCATTAGAATGACGCTAACGCAGCAGCGTTGAGCTATCAAGT
AAGTTGAGTTATTCGGGGGT

Downstream 100 bases:

>100_bases
GACCCTCCCCATGCCCAACACCACACCGTCGCCTGTTCAGGCCCGCATCCTCGCGGAAGCACACGATCCGCTGATCGCCC
GCATCTGGCGTGCCATGGCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 389; Mature: 388

Protein sequence:

>389_residues
MASASPPPGSNALRSRTYNRGLVLGHLRREGEAGRAEIARASRLSIQAVSNIIQDLVEGGWVVEAGKREGQRGLPAVTYA
LSSGTHIAMGVEIRPDAVLAAWIDLGGHVLHRDRLALPSARPEHVGPLIAQLPTRGDAAGVPHSAVFGAGVVMPGPIGQT
GLSDLTTQLPGWGDVSPETVLRDALGVPVTLENDANAAAMAERILGAAQGLGTFACLYFGTGLGLGLVINGEVFPGAFGN
AGEIGHIPVVSSNGACSLETLASRVSLVRALEADGITARTVDDLALQHQARPPAMEAWLQSAAGALSPAVQILENLIDPE
AIVMTGAMPPALLDELAGRVTLPERSVSNRADRARPRLIAGTAGRMAATLGAAALVVNSALSPRLMDTQ

Sequences:

>Translated_389_residues
MASASPPPGSNALRSRTYNRGLVLGHLRREGEAGRAEIARASRLSIQAVSNIIQDLVEGGWVVEAGKREGQRGLPAVTYA
LSSGTHIAMGVEIRPDAVLAAWIDLGGHVLHRDRLALPSARPEHVGPLIAQLPTRGDAAGVPHSAVFGAGVVMPGPIGQT
GLSDLTTQLPGWGDVSPETVLRDALGVPVTLENDANAAAMAERILGAAQGLGTFACLYFGTGLGLGLVINGEVFPGAFGN
AGEIGHIPVVSSNGACSLETLASRVSLVRALEADGITARTVDDLALQHQARPPAMEAWLQSAAGALSPAVQILENLIDPE
AIVMTGAMPPALLDELAGRVTLPERSVSNRADRARPRLIAGTAGRMAATLGAAALVVNSALSPRLMDTQ
>Mature_388_residues
ASASPPPGSNALRSRTYNRGLVLGHLRREGEAGRAEIARASRLSIQAVSNIIQDLVEGGWVVEAGKREGQRGLPAVTYAL
SSGTHIAMGVEIRPDAVLAAWIDLGGHVLHRDRLALPSARPEHVGPLIAQLPTRGDAAGVPHSAVFGAGVVMPGPIGQTG
LSDLTTQLPGWGDVSPETVLRDALGVPVTLENDANAAAMAERILGAAQGLGTFACLYFGTGLGLGLVINGEVFPGAFGNA
GEIGHIPVVSSNGACSLETLASRVSLVRALEADGITARTVDDLALQHQARPPAMEAWLQSAAGALSPAVQILENLIDPEA
IVMTGAMPPALLDELAGRVTLPERSVSNRADRARPRLIAGTAGRMAATLGAAALVVNSALSPRLMDTQ

Specific function: Transcriptional repressor of xylose-utilizing enzymes [H]

COG id: COG1940

COG function: function code KG; Transcriptional regulator/sugar kinase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ROK (nagC/xylR) family [H]

Homologues:

Organism=Escherichia coli, GI1786891, Length=404, Percent_Identity=24.5049504950495, Blast_Score=81, Evalue=9e-17,
Organism=Escherichia coli, GI1787878, Length=271, Percent_Identity=24.3542435424354, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000600
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00480 ROK [H]

EC number: NA

Molecular weight: Translated: 40030; Mature: 39899

Theoretical pI: Translated: 6.10; Mature: 6.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASASPPPGSNALRSRTYNRGLVLGHLRREGEAGRAEIARASRLSIQAVSNIIQDLVEGG
CCCCCCCCCCHHHHHHHCCCCEEEEHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
WVVEAGKREGQRGLPAVTYALSSGTHIAMGVEIRPDAVLAAWIDLGGHVLHRDRLALPSA
EEEECCCCCCCCCCCCEEEEECCCCEEEEEEEECCCHHHHHHHHCCCCEEECCCCCCCCC
RPEHVGPLIAQLPTRGDAAGVPHSAVFGAGVVMPGPIGQTGLSDLTTQLPGWGDVSPETV
CCHHHCHHHHHCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCCCHHHH
LRDALGVPVTLENDANAAAMAERILGAAQGLGTFACLYFGTGLGLGLVINGEVFPGAFGN
HHHHCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEECCCCCCC
AGEIGHIPVVSSNGACSLETLASRVSLVRALEADGITARTVDDLALQHQARPPAMEAWLQ
CCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHH
SAAGALSPAVQILENLIDPEAIVMTGAMPPALLDELAGRVTLPERSVSNRADRARPRLIA
HHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHCCCEECCCHHHHHHHHHCCCCEEE
GTAGRMAATLGAAALVVNSALSPRLMDTQ
CCCHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
ASASPPPGSNALRSRTYNRGLVLGHLRREGEAGRAEIARASRLSIQAVSNIIQDLVEGG
CCCCCCCCCHHHHHHHCCCCEEEEHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
WVVEAGKREGQRGLPAVTYALSSGTHIAMGVEIRPDAVLAAWIDLGGHVLHRDRLALPSA
EEEECCCCCCCCCCCCEEEEECCCCEEEEEEEECCCHHHHHHHHCCCCEEECCCCCCCCC
RPEHVGPLIAQLPTRGDAAGVPHSAVFGAGVVMPGPIGQTGLSDLTTQLPGWGDVSPETV
CCHHHCHHHHHCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCCCHHHH
LRDALGVPVTLENDANAAAMAERILGAAQGLGTFACLYFGTGLGLGLVINGEVFPGAFGN
HHHHCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEECCCCCCC
AGEIGHIPVVSSNGACSLETLASRVSLVRALEADGITARTVDDLALQHQARPPAMEAWLQ
CCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHH
SAAGALSPAVQILENLIDPEAIVMTGAMPPALLDELAGRVTLPERSVSNRADRARPRLIA
HHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHCCCEECCCHHHHHHHHHCCCCEEE
GTAGRMAATLGAAALVVNSALSPRLMDTQ
CCCHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2544559 [H]