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The map label for this gene is dgoR [H]

Identifier: 89054876

GI number: 89054876

Start: 2387418

End: 2388197

Strand: Direct

Name: dgoR [H]

Synonym: Jann_2385

Alternate gene names: 89054876

Gene position: 2387418-2388197 (Clockwise)

Preceding gene: 89054872

Following gene: 89054878

Centisome position: 55.29

GC content: 67.95

Gene sequence:

>780_bases
ATGAAAATCGATCCCAACAGCGACGCCGACCTGTCGGCGCAGATCGCCAAAGCCATCCGCGATGCGATCGTTGCGGGCGA
TCTGATCGTGGATGCGCGCCTGCCGTCGGAGGCGGATCTGTCGGACACGTTCGGCGTTTCGCGCTCCACCGTGCGCGAGG
CGTTGAAGCGGCTGGCGGCGCAATCGTTGATCCGCACCCAGCGCGGGGCGTTCGGCGGCGCTTTCGTGAACCGGCTGTCC
TATGAGGACGCTTACGGTCAGCATATTACCACTTCCACCCTGCTTCTGGGCATGAACGATGTAGCGTTCGACACGGCGTG
CGAGGCGCGGTTTGCGCTGGAGCGGGCCTGTGCGGATCTGTCGGCCGCGCGGCGCAGCGCCGATCATCTGGCCACGATGC
GGGTAGAGGCTCTGCGTCAGGCGCAGCCGGGCCTGAGCGATGAGGCGTTCTGCGCCTCGGACGTGGCCTTTCACCGGGCG
CTGGTGGACGGCGCGGCCAACCCGGTGATGTCGTACCAGCTGGCCGGGGCGGTGGAGGCGATGCAACCGCTGATGAACAT
GATCACCTTCACCGCGCGCAACCGGGCGGAAATCGTGCGCCTGCACGGGCGGATCGCCGATGCGGTGGAGGCGCGCGACG
GGGGGGCTGTGGCCTCGGCCCTGACGGAGCTGGAAGCCTACACCAAAGCCCTGGCGCAATCGGTCTTCGCCGCCCGCGCT
CAGGCCGCCGCTTCGGATGGGGCCGGATCAGACGGGATGTCAACGACGGAGGCGCGGTAG

Upstream 100 bases:

>100_bases
ACACGTTGTGCAAACACGGGGCTGTATCCCTCCCAGGCTGTCCGACTCGGCGGGCAGAATTCTCTTGCGCCTCATTGTCA
GACATTTAAACGTCTGACAA

Downstream 100 bases:

>100_bases
ATCCGCGTCAGGATCGCGGCCCCGATCAGGGTGGTCAGCGTATCGACCACAGCATAGCCCAGGCGGATCATGTATTCGGT
GCCGAGAGTGAGCCCCTCCG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MKIDPNSDADLSAQIAKAIRDAIVAGDLIVDARLPSEADLSDTFGVSRSTVREALKRLAAQSLIRTQRGAFGGAFVNRLS
YEDAYGQHITTSTLLLGMNDVAFDTACEARFALERACADLSAARRSADHLATMRVEALRQAQPGLSDEAFCASDVAFHRA
LVDGAANPVMSYQLAGAVEAMQPLMNMITFTARNRAEIVRLHGRIADAVEARDGGAVASALTELEAYTKALAQSVFAARA
QAAASDGAGSDGMSTTEAR

Sequences:

>Translated_259_residues
MKIDPNSDADLSAQIAKAIRDAIVAGDLIVDARLPSEADLSDTFGVSRSTVREALKRLAAQSLIRTQRGAFGGAFVNRLS
YEDAYGQHITTSTLLLGMNDVAFDTACEARFALERACADLSAARRSADHLATMRVEALRQAQPGLSDEAFCASDVAFHRA
LVDGAANPVMSYQLAGAVEAMQPLMNMITFTARNRAEIVRLHGRIADAVEARDGGAVASALTELEAYTKALAQSVFAARA
QAAASDGAGSDGMSTTEAR
>Mature_259_residues
MKIDPNSDADLSAQIAKAIRDAIVAGDLIVDARLPSEADLSDTFGVSRSTVREALKRLAAQSLIRTQRGAFGGAFVNRLS
YEDAYGQHITTSTLLLGMNDVAFDTACEARFALERACADLSAARRSADHLATMRVEALRQAQPGLSDEAFCASDVAFHRA
LVDGAANPVMSYQLAGAVEAMQPLMNMITFTARNRAEIVRLHGRIADAVEARDGGAVASALTELEAYTKALAQSVFAARA
QAAASDGAGSDGMSTTEAR

Specific function: Repressor for the dgoRKAT operon. Binds D-galactonate as an inducer [H]

COG id: COG2186

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI48994955, Length=218, Percent_Identity=29.3577981651376, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI1790032, Length=176, Percent_Identity=30.1136363636364, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 27326; Mature: 27326

Theoretical pI: Translated: 4.98; Mature: 4.98

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIDPNSDADLSAQIAKAIRDAIVAGDLIVDARLPSEADLSDTFGVSRSTVREALKRLAA
CCCCCCCCCHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCHHHHCCCHHHHHHHHHHHHH
QSLIRTQRGAFGGAFVNRLSYEDAYGQHITTSTLLLGMNDVAFDTACEARFALERACADL
HHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
SAARRSADHLATMRVEALRQAQPGLSDEAFCASDVAFHRALVDGAANPVMSYQLAGAVEA
HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
MQPLMNMITFTARNRAEIVRLHGRIADAVEARDGGAVASALTELEAYTKALAQSVFAARA
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
QAAASDGAGSDGMSTTEAR
HHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKIDPNSDADLSAQIAKAIRDAIVAGDLIVDARLPSEADLSDTFGVSRSTVREALKRLAA
CCCCCCCCCHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCHHHHCCCHHHHHHHHHHHHH
QSLIRTQRGAFGGAFVNRLSYEDAYGQHITTSTLLLGMNDVAFDTACEARFALERACADL
HHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
SAARRSADHLATMRVEALRQAQPGLSDEAFCASDVAFHRALVDGAANPVMSYQLAGAVEA
HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
MQPLMNMITFTARNRAEIVRLHGRIADAVEARDGGAVASALTELEAYTKALAQSVFAARA
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
QAAASDGAGSDGMSTTEAR
HHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7686882; 9278503 [H]