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The map label for this gene is potD [C]

Identifier: 89054878

GI number: 89054878

Start: 2389165

End: 2390199

Strand: Direct

Name: potD [C]

Synonym: Jann_2387

Alternate gene names: 89054878

Gene position: 2389165-2390199 (Clockwise)

Preceding gene: 89054876

Following gene: 89054880

Centisome position: 55.33

GC content: 63.77

Gene sequence:

>1035_bases
ATGACGAAAACAACCCTTCTTGCCAGTGCCGCGACGCTTGCGCTGGCGGTGCCTGCCACAGCCCAGAACCTGACCGTGTT
CGATTACTCGGGCTTTGAGGATCCGGCCTTTCACCAGCCGTTCATCGACGCCCACGGTGCGCCGGAATTCGTGTTCTTCG
GCGATGAGGATGAGGCGTTCCAGCGTCTTCTGGCGGGCTTCCAGTCCGATGTGACGCATATCTGCGCAGGCTCCGTGCCG
CGCTGGCAGGCCTCGGGCATCATCGAGGCCTGGGAGACGGACCAGATCGCGGCGTTCGAGACGCTGAACGCCGATCTGGT
GGGCCAGGACGTGCTGGCGGGCAGTGAGGACCTGTTCTTCCTGCCCACCGATTACGGCTCCACCGCATTGGCCTACAACG
CGGATGAGCTGTCCGAGAGCGATGTGACGTCGCTGGAGATCTTCAACAACCCCGCTTTTGCGGGCCGCCTGTCGATCCCC
GATAACGTCGATGACGCCTATGCGCTGGCCTACCTGGCCACGGGTGTCACCGATTGGGCCGATGCATCTGACGCAGAGTT
TGAGGCCGCGACTGACTGGCTGCGCGGCATTCACCAGAACCTGCGCACCTATTGGACCGATCCGGCTGAGATCAGCCAGC
TGATCGGCTCGGGCGAGGTTCTGGCCGCCTGGGTCTGGAACGAGGTGCCCGTGGCCATGGCCGAGGAAGGCTTCAACGTG
GGCTTTGCGCGCGATACGGCGGAAGGCACGTCCGTGTGGCTGTGCGGCTACGTGAACATGGTCGACGCGCCGGGCGAGGA
GCCGATGGCCTACGACTACGTCAACGCCGTGTTGTCAGAGGGATCTGCCGGACCGCTTCTGGGCAGCGGCTTTGGATCGG
CCAATGATGCCGCCCTTCAGGCCTTGGGCGCGGAGGCCATGGAGGCTGCGGGTCTGGGTGACGTGACGGTGCCGGTTCTG
GCGCAATTGCCGATTTCCAACGAACAGCGAGAGCGGCAGGCAGAGGCGTTTGAACGCATTAAGGCCGGGTTCTAA

Upstream 100 bases:

>100_bases
GTGCCGGTGGCGCGTCAAGCAAATCCGCTGGACGCCTCCTCCGCAGCACCTTACCGTCTTCGGCAAACCAATCATAACGT
TGCCAACAGGGATATGCTCC

Downstream 100 bases:

>100_bases
GCCCCTGTAAGATAACATTTATCATTGAGCGCGCATCGGGAAACCGGAGCGCGTTTTCCTTGGGGGTTATGCTGTGCTGC
GGACAAGAAAAAACGTGCCA

Product: spermidine/putrescine ABC transporter periplasmic spermidine/putrescine-binding protein

Products: phosphate; putrescine [Cytoplasm]; ADP; spermidine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 344; Mature: 343

Protein sequence:

>344_residues
MTKTTLLASAATLALAVPATAQNLTVFDYSGFEDPAFHQPFIDAHGAPEFVFFGDEDEAFQRLLAGFQSDVTHICAGSVP
RWQASGIIEAWETDQIAAFETLNADLVGQDVLAGSEDLFFLPTDYGSTALAYNADELSESDVTSLEIFNNPAFAGRLSIP
DNVDDAYALAYLATGVTDWADASDAEFEAATDWLRGIHQNLRTYWTDPAEISQLIGSGEVLAAWVWNEVPVAMAEEGFNV
GFARDTAEGTSVWLCGYVNMVDAPGEEPMAYDYVNAVLSEGSAGPLLGSGFGSANDAALQALGAEAMEAAGLGDVTVPVL
AQLPISNEQRERQAEAFERIKAGF

Sequences:

>Translated_344_residues
MTKTTLLASAATLALAVPATAQNLTVFDYSGFEDPAFHQPFIDAHGAPEFVFFGDEDEAFQRLLAGFQSDVTHICAGSVP
RWQASGIIEAWETDQIAAFETLNADLVGQDVLAGSEDLFFLPTDYGSTALAYNADELSESDVTSLEIFNNPAFAGRLSIP
DNVDDAYALAYLATGVTDWADASDAEFEAATDWLRGIHQNLRTYWTDPAEISQLIGSGEVLAAWVWNEVPVAMAEEGFNV
GFARDTAEGTSVWLCGYVNMVDAPGEEPMAYDYVNAVLSEGSAGPLLGSGFGSANDAALQALGAEAMEAAGLGDVTVPVL
AQLPISNEQRERQAEAFERIKAGF
>Mature_343_residues
TKTTLLASAATLALAVPATAQNLTVFDYSGFEDPAFHQPFIDAHGAPEFVFFGDEDEAFQRLLAGFQSDVTHICAGSVPR
WQASGIIEAWETDQIAAFETLNADLVGQDVLAGSEDLFFLPTDYGSTALAYNADELSESDVTSLEIFNNPAFAGRLSIPD
NVDDAYALAYLATGVTDWADASDAEFEAATDWLRGIHQNLRTYWTDPAEISQLIGSGEVLAAWVWNEVPVAMAEEGFNVG
FARDTAEGTSVWLCGYVNMVDAPGEEPMAYDYVNAVLSEGSAGPLLGSGFGSANDAALQALGAEAMEAAGLGDVTVPVLA
QLPISNEQRERQAEAFERIKAGF

Specific function: Required For The Activity Of The Bacterial Periplasmic Transport System Of Putrescine And Spermidine. Polyamine Binding Protein. [C]

COG id: COG0687

COG function: function code E; Spermidine/putrescine-binding periplasmic protein

Gene ontology:

Cell location: Periplasmic Protein [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 1040 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 260 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 460 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 380 Molecules/Cell In: Stationary Phase,

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 36694; Mature: 36562

Theoretical pI: Translated: 3.60; Mature: 3.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKTTLLASAATLALAVPATAQNLTVFDYSGFEDPAFHQPFIDAHGAPEFVFFGDEDEAF
CCCHHHHHHHHHEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCHHHH
QRLLAGFQSDVTHICAGSVPRWQASGIIEAWETDQIAAFETLNADLVGQDVLAGSEDLFF
HHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCEEEHHHCCCCCCCHHHHCCCCCEEE
LPTDYGSTALAYNADELSESDVTSLEIFNNPAFAGRLSIPDNVDDAYALAYLATGVTDWA
EECCCCCEEEEECHHHCCCCCCCEEEEECCCCCEEECCCCCCCCHHHHHHHHHHCCCCCC
DASDAEFEAATDWLRGIHQNLRTYWTDPAEISQLIGSGEVLAAWVWNEVPVAMAEEGFNV
CCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCEEEEEECCCCCHHHHCCCCCC
GFARDTAEGTSVWLCGYVNMVDAPGEEPMAYDYVNAVLSEGSAGPLLGSGFGSANDAALQ
CEECCCCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHH
ALGAEAMEAAGLGDVTVPVLAQLPISNEQRERQAEAFERIKAGF
HHHHHHHHHCCCCCCHHHHHEECCCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TKTTLLASAATLALAVPATAQNLTVFDYSGFEDPAFHQPFIDAHGAPEFVFFGDEDEAF
CCHHHHHHHHHEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCHHHH
QRLLAGFQSDVTHICAGSVPRWQASGIIEAWETDQIAAFETLNADLVGQDVLAGSEDLFF
HHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCEEEHHHCCCCCCCHHHHCCCCCEEE
LPTDYGSTALAYNADELSESDVTSLEIFNNPAFAGRLSIPDNVDDAYALAYLATGVTDWA
EECCCCCEEEEECHHHCCCCCCCEEEEECCCCCEEECCCCCCCCHHHHHHHHHHCCCCCC
DASDAEFEAATDWLRGIHQNLRTYWTDPAEISQLIGSGEVLAAWVWNEVPVAMAEEGFNV
CCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCEEEEEECCCCCHHHHCCCCCC
GFARDTAEGTSVWLCGYVNMVDAPGEEPMAYDYVNAVLSEGSAGPLLGSGFGSANDAALQ
CEECCCCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHH
ALGAEAMEAAGLGDVTVPVLAQLPISNEQRERQAEAFERIKAGF
HHHHHHHHHCCCCCCHHHHHEECCCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: putrescine [Periplasm]; H2O; ATP; spermidine [Periplasm] [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] ATP + spermidine [Periplasm] + H2O = ADP + phosphate + spermidine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA