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The map label for this gene is sufD [H]

Identifier: 89054849

GI number: 89054849

Start: 2363345

End: 2364637

Strand: Reverse

Name: sufD [H]

Synonym: Jann_2358

Alternate gene names: 89054849

Gene position: 2364637-2363345 (Counterclockwise)

Preceding gene: 89054850

Following gene: 89054848

Centisome position: 54.76

GC content: 62.72

Gene sequence:

>1293_bases
ATGGCCGCTCCTGCCGCAAAGCCTGACCTGACCGAGGCGCGCCTTGCCGCGCTGTCGATGCCCGATGGCGCGCCGGAGGC
CCGAAAGGCCGCGCTGGCCCGGGTCCGCGAAATGGGCCTGCCCACCCGCCGCGATGAATATTGGCGCTACACCGACCCGT
CGTCCCTGACCCAGGCTGGGGCGCCGCGCGCCGCTGTGTTTCATGATCCGAACGAAGCGCCGCTGTTCAAAGACATTGAC
CGCCTGAAGGTTGTGTTCGTGGACGGCGTGTTCGATGCAGAGAAGTCTGATGACCTCTCCATAGCGGGTCTGGAGATTGA
GCGTTTGGCGGATGTGTTGTCGAAAGACATCCACTGGGCCAAGGATCTGTACGGCACCCAGGAGGCGGCGGGGCAGGACC
CCGTTGCGCGCCCGCTGGCCGCCCTCAACACAGCGTTTGCAACCGACGGGATCGTCATTCGCGCGACGGCCAAGGCCGAA
AAACCCGTGGCGCTGATCTACCTTCACCGCGATGAGACATCCGACGCGATCCTGCACCATCTGGTTCGGGTCGAGACGGG
GGCCGAGTTGACCGTGCTGGAAGTGGGCCCGGCAGCCGCGCGCTTCAACAAATGCATGGAGATCGACGTGGCCGACGGCG
GCGCGTTCCACCATGTGCGCGCCCAGGGTCGTGACCATGAGCGCCGCGCCGTGACGCATATGTTTGCCCGTGTGGGGGAG
GAGGCGCTGTATAAGTCCTTCACCACCACCGCCAACGGCGTGACAACGCGCAACGAGCATGTCATTGAAATCGTAGGTAA
TAATGCCGTAGCCCATGTGGCCGGTGCAGCACTTGGCGATGCCAGAAACGCCGCCTTCCACCATGACGATACCGTTTTCA
TCACCCACGATGCGGTCAATTGCGAAAGCCGTCAGGTGTTCAAGAAGGTTCTGCGCAACGGGGCGGAGGGGGTCTTTCAG
GGCAAAATTCTTGTCAAGGAAGGCGCTCAGAAGACGGATGGCTATCAGATCAGCCAGGCGCTTTTGCTGGATGACGACAG
CAGCTTTCAGGCCAAGCCGGAATTGGAGATCTACGCCGACGATGTGATCTGCTCCCACGGGTCGACCACCGGGGCGATTG
ACGAAGAGGCGCTCTTTTACCTGCGCTCGCGCGGCTTGCCGACGGATCAAGCGACGGATCTTCTGGTTCTCGCGTTTCTG
GCCGAGGCGATCGAGGAAATCGCCGATGAGGCGTTGCGCGACGATGTCTTGGCGCGCCTGGAGGAATGGCTGGTGCGCAG
GCGGCACGGGTAA

Upstream 100 bases:

>100_bases
TCATGGCTGACGGGCGCATCGTGAAGACGGGCGGGCCGGAACTGGCCCTTGAGGTCGAGAAAAACGGTTATGCCGATATC
CTCTCGGAGGTGGCGTAACC

Downstream 100 bases:

>100_bases
ATAGATGAGCGTCTCTCAGGACATAGCCGCCACATGGCGGCGTCCGCGCACGGTGATGCGCAAGTTGCTGGCAATGGGCA
GACGCGAAGATCGCGCCCTG

Product: SufBD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 430; Mature: 429

Protein sequence:

>430_residues
MAAPAAKPDLTEARLAALSMPDGAPEARKAALARVREMGLPTRRDEYWRYTDPSSLTQAGAPRAAVFHDPNEAPLFKDID
RLKVVFVDGVFDAEKSDDLSIAGLEIERLADVLSKDIHWAKDLYGTQEAAGQDPVARPLAALNTAFATDGIVIRATAKAE
KPVALIYLHRDETSDAILHHLVRVETGAELTVLEVGPAAARFNKCMEIDVADGGAFHHVRAQGRDHERRAVTHMFARVGE
EALYKSFTTTANGVTTRNEHVIEIVGNNAVAHVAGAALGDARNAAFHHDDTVFITHDAVNCESRQVFKKVLRNGAEGVFQ
GKILVKEGAQKTDGYQISQALLLDDDSSFQAKPELEIYADDVICSHGSTTGAIDEEALFYLRSRGLPTDQATDLLVLAFL
AEAIEEIADEALRDDVLARLEEWLVRRRHG

Sequences:

>Translated_430_residues
MAAPAAKPDLTEARLAALSMPDGAPEARKAALARVREMGLPTRRDEYWRYTDPSSLTQAGAPRAAVFHDPNEAPLFKDID
RLKVVFVDGVFDAEKSDDLSIAGLEIERLADVLSKDIHWAKDLYGTQEAAGQDPVARPLAALNTAFATDGIVIRATAKAE
KPVALIYLHRDETSDAILHHLVRVETGAELTVLEVGPAAARFNKCMEIDVADGGAFHHVRAQGRDHERRAVTHMFARVGE
EALYKSFTTTANGVTTRNEHVIEIVGNNAVAHVAGAALGDARNAAFHHDDTVFITHDAVNCESRQVFKKVLRNGAEGVFQ
GKILVKEGAQKTDGYQISQALLLDDDSSFQAKPELEIYADDVICSHGSTTGAIDEEALFYLRSRGLPTDQATDLLVLAFL
AEAIEEIADEALRDDVLARLEEWLVRRRHG
>Mature_429_residues
AAPAAKPDLTEARLAALSMPDGAPEARKAALARVREMGLPTRRDEYWRYTDPSSLTQAGAPRAAVFHDPNEAPLFKDIDR
LKVVFVDGVFDAEKSDDLSIAGLEIERLADVLSKDIHWAKDLYGTQEAAGQDPVARPLAALNTAFATDGIVIRATAKAEK
PVALIYLHRDETSDAILHHLVRVETGAELTVLEVGPAAARFNKCMEIDVADGGAFHHVRAQGRDHERRAVTHMFARVGEE
ALYKSFTTTANGVTTRNEHVIEIVGNNAVAHVAGAALGDARNAAFHHDDTVFITHDAVNCESRQVFKKVLRNGAEGVFQG
KILVKEGAQKTDGYQISQALLLDDDSSFQAKPELEIYADDVICSHGSTTGAIDEEALFYLRSRGLPTDQATDLLVLAFLA
EAIEEIADEALRDDVLARLEEWLVRRRHG

Specific function: The sufBCD complex acts synergistically with sufE to stimulate the cysteine desulfurase activity of sufS. The sufBCD complex contributes to the assembly or repair of oxygen-labile iron-sulfur clusters under oxidative stress. May facilitate iron uptake fro

COG id: COG0719

COG function: function code O; ABC-type transport system involved in Fe-S cluster assembly, permease component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0051 (ycf24) family [H]

Homologues:

Organism=Escherichia coli, GI1787971, Length=411, Percent_Identity=28.9537712895377, Blast_Score=148, Evalue=6e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000825
- InterPro:   IPR011542 [H]

Pfam domain/function: PF01458 UPF0051 [H]

EC number: NA

Molecular weight: Translated: 46927; Mature: 46796

Theoretical pI: Translated: 5.00; Mature: 5.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAPAAKPDLTEARLAALSMPDGAPEARKAALARVREMGLPTRRDEYWRYTDPSSLTQAG
CCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEECCCHHHHHCC
APRAAVFHDPNEAPLFKDIDRLKVVFVDGVFDAEKSDDLSIAGLEIERLADVLSKDIHWA
CCCEEEEECCCCCCHHHHHCCEEEEEEECEECCCCCCCCEEECCCHHHHHHHHHHHHHHH
KDLYGTQEAAGQDPVARPLAALNTAFATDGIVIRATAKAEKPVALIYLHRDETSDAILHH
HHHCCCHHHCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEEEECCCCHHHHHHH
LVRVETGAELTVLEVGPAAARFNKCMEIDVADGGAFHHVRAQGRDHERRAVTHMFARVGE
HHHHCCCCEEEEEECCCHHHHHCCEEEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHH
EALYKSFTTTANGVTTRNEHVIEIVGNNAVAHVAGAALGDARNAAFHHDDTVFITHDAVN
HHHHHHHHCCCCCCCCCCCEEEEEECCCCHHHHHHHHHCCCCCCCEECCCEEEEEECCCC
CESRQVFKKVLRNGAEGVFQGKILVKEGAQKTDGYQISQALLLDDDSSFQAKPELEIYAD
CHHHHHHHHHHHCCCCCEEECEEEEECCCCCCCCEEEEEEEEECCCCCCCCCCCEEEEEC
DVICSHGSTTGAIDEEALFYLRSRGLPTDQATDLLVLAFLAEAIEEIADEALRDDVLARL
CEEECCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EEWLVRRRHG
HHHHHHHCCC
>Mature Secondary Structure 
AAPAAKPDLTEARLAALSMPDGAPEARKAALARVREMGLPTRRDEYWRYTDPSSLTQAG
CCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEECCCHHHHHCC
APRAAVFHDPNEAPLFKDIDRLKVVFVDGVFDAEKSDDLSIAGLEIERLADVLSKDIHWA
CCCEEEEECCCCCCHHHHHCCEEEEEEECEECCCCCCCCEEECCCHHHHHHHHHHHHHHH
KDLYGTQEAAGQDPVARPLAALNTAFATDGIVIRATAKAEKPVALIYLHRDETSDAILHH
HHHCCCHHHCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEEEECCCCHHHHHHH
LVRVETGAELTVLEVGPAAARFNKCMEIDVADGGAFHHVRAQGRDHERRAVTHMFARVGE
HHHHCCCCEEEEEECCCHHHHHCCEEEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHH
EALYKSFTTTANGVTTRNEHVIEIVGNNAVAHVAGAALGDARNAAFHHDDTVFITHDAVN
HHHHHHHHCCCCCCCCCCCEEEEEECCCCHHHHHHHHHCCCCCCCEECCCEEEEEECCCC
CESRQVFKKVLRNGAEGVFQGKILVKEGAQKTDGYQISQALLLDDDSSFQAKPELEIYAD
CHHHHHHHHHHHCCCCCEEECEEEEECCCCCCCCEEEEEEEEECCCCCCCCCCCEEEEEC
DVICSHGSTTGAIDEEALFYLRSRGLPTDQATDLLVLAFLAEAIEEIADEALRDDVLARL
CEEECCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EEWLVRRRHG
HHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 10322040 [H]