| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
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The map label for this gene is 89054848
Identifier: 89054848
GI number: 89054848
Start: 2362801
End: 2363340
Strand: Reverse
Name: 89054848
Synonym: Jann_2357
Alternate gene names: NA
Gene position: 2363340-2362801 (Counterclockwise)
Preceding gene: 89054849
Following gene: 89054847
Centisome position: 54.73
GC content: 63.52
Gene sequence:
>540_bases ATGAGCGTCTCTCAGGACATAGCCGCCACATGGCGGCGTCCGCGCACGGTGATGCGCAAGTTGCTGGCAATGGGCAGACG CGAAGATCGCGCCCTGGCCTTTCTCTTTGCGGCCTGCGCGCTGATTTTCGTGGGCCAACTGCCAAGGTTGCAACGGGCCA ATACGCTGGAGCAACAGGAGTGGCTGGCAGCGGGCGCGAAAGCCTCGGACAAGGTCGCCACCTTCCAGGCCGAGATCGCG ATCACCGGCTTCGCCTGGCTGCTCGTCTGGCCGTTACTGTTTTACTTCCTTGGTGGGCTGACGCATCTGATCGCCAAACT CTTCGGCGGCAGGGGCAGCTTTTACACGGCGCGTCTGGCGCTGTTCTGGACTCTGCTGGCATCAAGCCCCGCGTGGCTGT TTCACGGCCTCGTCTCAGGCTTCATCGGACCGGGGCCGGCACAGCAGATCGCGGGCGTGATCGTTGTCGGATCGTTCCTG TTGTTCTGGAGCGTCTGCCTGCGTGAGGCCGAGACCAACCCTGACGGAGCCGCGGCATGA
Upstream 100 bases:
>100_bases CTGGCCGAGGCGATCGAGGAAATCGCCGATGAGGCGTTGCGCGACGATGTCTTGGCGCGCCTGGAGGAATGGCTGGTGCG CAGGCGGCACGGGTAAATAG
Downstream 100 bases:
>100_bases GCGATCTTCTGGACCTGCGGTTTCTCGGCAAGCTCGCAGTAGATACTATTCGCGACCCCAGAGGCAGTGCGGCAGAGGTC CTGCGCCTGGCGCCCCCGCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 179; Mature: 178
Protein sequence:
>179_residues MSVSQDIAATWRRPRTVMRKLLAMGRREDRALAFLFAACALIFVGQLPRLQRANTLEQQEWLAAGAKASDKVATFQAEIA ITGFAWLLVWPLLFYFLGGLTHLIAKLFGGRGSFYTARLALFWTLLASSPAWLFHGLVSGFIGPGPAQQIAGVIVVGSFL LFWSVCLREAETNPDGAAA
Sequences:
>Translated_179_residues MSVSQDIAATWRRPRTVMRKLLAMGRREDRALAFLFAACALIFVGQLPRLQRANTLEQQEWLAAGAKASDKVATFQAEIA ITGFAWLLVWPLLFYFLGGLTHLIAKLFGGRGSFYTARLALFWTLLASSPAWLFHGLVSGFIGPGPAQQIAGVIVVGSFL LFWSVCLREAETNPDGAAA >Mature_178_residues SVSQDIAATWRRPRTVMRKLLAMGRREDRALAFLFAACALIFVGQLPRLQRANTLEQQEWLAAGAKASDKVATFQAEIAI TGFAWLLVWPLLFYFLGGLTHLIAKLFGGRGSFYTARLALFWTLLASSPAWLFHGLVSGFIGPGPAQQIAGVIVVGSFLL FWSVCLREAETNPDGAAA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19573; Mature: 19442
Theoretical pI: Translated: 10.54; Mature: 10.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVSQDIAATWRRPRTVMRKLLAMGRREDRALAFLFAACALIFVGQLPRLQRANTLEQQE CCCCHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH WLAAGAKASDKVATFQAEIAITGFAWLLVWPLLFYFLGGLTHLIAKLFGGRGSFYTARLA HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH LFWTLLASSPAWLFHGLVSGFIGPGPAQQIAGVIVVGSFLLFWSVCLREAETNPDGAAA HHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure SVSQDIAATWRRPRTVMRKLLAMGRREDRALAFLFAACALIFVGQLPRLQRANTLEQQE CCCHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH WLAAGAKASDKVATFQAEIAITGFAWLLVWPLLFYFLGGLTHLIAKLFGGRGSFYTARLA HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH LFWTLLASSPAWLFHGLVSGFIGPGPAQQIAGVIVVGSFLLFWSVCLREAETNPDGAAA HHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA