| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
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The map label for this gene is ntrY [H]
Identifier: 89054730
GI number: 89054730
Start: 2244354
End: 2246624
Strand: Direct
Name: ntrY [H]
Synonym: Jann_2239
Alternate gene names: 89054730
Gene position: 2244354-2246624 (Clockwise)
Preceding gene: 89054729
Following gene: 89054731
Centisome position: 51.98
GC content: 61.43
Gene sequence:
>2271_bases ATGCGAGTGGTGGATGAGCCCGCCCGGGGTTTGGGCGATCAGGTGACGATACTGGATCGGTTGGGTCGGGTGCGCCGCAA CCGGAAGTTCCGCTCGGGTGGAACGATCGCGCTTGTGTTGCTGGCGCCATGCCTTGCGCTGGCCACGTTCCTCGCCTTCA GCCCGCTCAGGGACGCGTCCGACAGCACGGTACGCACGCTCGTCCTGCTGGCCGATTTCGTCTATATCCTTGTAATCATT ACGCTTGTGCTGCGGGAGGTGGCGCGGATCGTGGCCTCACGCCGCGCGCAATCGGCGGGGTCACGGTTGCATCTGCGGCT GACGGCGATCTTTGGCGTCGTGGCACTGGTGCCCACCGTTGTCGTGGCCATTCTGGCGGTCCTCAGCGTGAATATGGGTC TTGAGGGGTGGTTCTCGGACCGTGTGTCGACGGCTTTGGGCAATTCCGTCGACGCCGCCGTGGCCTATCAGCAGGAGCAT CGCGATGATCTGGCGCAGGATGCGCGCGCGCTGGGGTCGTTTCTTAACATCAACCGTCGCACCGCCCCGTTCCTGTCAGA CGGAGATCTGCGGCAGGTGCTCAGCGCCGGGCAAAGCCAGATCCAGCGCGGCATCAACGAAGCATTCGTGATCGACGGTG GCGGAGAGATCCGCGCGCGCGGCGAGCGGTCCTATCAGTTTGATTATGATCGTCCCAGCGATGCCGATCTGGCGCTGGCC GCAGAGGGGGATGTCGTCATCAGCGAAGATCGCGCGCAGAATGAATTCCGTGCCCTCTTCCGGCTGGCTGCCTTTCCGGA TCGCTACCTTTACATCTCTCGGGAGGTCGATGGGCAGATCATCGCGCTTCTCGATGAAACCGAACAAACCGTACTTCTTT ATCGGCAAGTGGAGGAAGATCGCGGGCGGCTGCTGTTTGATTTCGCCCTTCTGTATCTAGGTTTTGCGACCCTGATGATC CTGGCGGCGATCTGGGCGGGCCTATCGTTTGGAGAACGGTTGTCGCGCCCCGTCGGCCAGTTGGCAGGCGCCGCACAGCG CGTGGGCCAGGGCGATCTGGACGTGCGCGTGCGCGAGGAGACGTCCGACGATGAAATTGCCATGCTGGGGCGGCTGTTCA ACCAGATGACCCGGCAATTGAAAGGTCAGCGCGAGACGATGATCGAGCAGAACGCCGCAACGGAGGAATCGCGGCGGCTG TTTGACAGCGTTTTGTCGTCCGTCACAGCAGGTGTCATCGGGTTGGAGAAAGGCGGGCGCGTCGATTTCATGAACCGATC CGCCATGCGGCTTCTGTCCCTGGTCGAACAGCGCGACAGTGGCTTGACGATGGAGGCGGCGGTCCCCGAATTCGCCCCCT TGTTTGAAAAGCTCACCGGCACCACGGCGGAGGCGGTTCAGGAAGAGATAAAGCTGACCCGCAGCGGCAAACAGGAAAGC CTGCTGGTGCGGATGGCCACGCGCCGCAATCTGGACGGAGCGTTGGAGGGTTATGTGGTCGCCTTTGATGACGTGACCCA ATTGGTTTCTGCGCAGCGCATGGCGGCCTGGGGCGATGTGGCGCGCCGGATCGCCCATGAGATCAAGAACCCGCTGACCC CGATCCAGCTATCGGCGGAGCGCATAAAACGCAAATTCTCCAGGATGTTGGAGGACGAAGATAAGGTATCGCTTGAGCAG ATGACCGAGGTCATCGTTCGCCAGACCAATGATCTGCGCCGGATCGTCGATGAGTTCTCAAAGTTCGCGCGGATGCCGGA GCCGGAAACGCGGGTCGAAGATATAGTTCAACTGTTAAACGATGCCGTGATGCTGCAACGGGCGGGGCAGCCCGACACGC ATTTCGTGACGGACATCCCGGACAGACGGGTGCCCGCTGAGGTCGATTCCACGATGATCGGCCAGGCCCTCACCAATTTG TTAAAGAACGGCGGAGAAGCCATTGAAAGCCTTTATGAAAAAGGTAAACCTGACGGACATGTGCCGCAGTTGCGGGTCGC ATTGTCTCTGACGCCGGATGCGCTCCACATCGACATCTCGGACAATGGGATCGGCCTGCCGCCGGACCGCGCGAAATTGT TCGAGCCTTACGTGACAACCCGCGACAAGGGCACCGGCCTTGGCCTGCCCATCGTCAAAAAGATCATTGAGGAGCACGGC GGTACGCTGACGCTGGACGATGCCGAACCGTTTGAGGACGGCGCGCATCCCGGCGCCAGGGCCCGCGTTACGCTGCCACG CCTCCCAGACCCCACAGGAGAAGAGACATGA
Upstream 100 bases:
>100_bases TGTAATAAAGCCACACGCGTGGCACATCGGGAACAGGCATCCCGATGCGCACTGGCCCTGTCAGGCCAAGCAAGCGCGCG CCAGAAGGATGCGGTGGGGG
Downstream 100 bases:
>100_bases GCGATATTCTGGTCGTAGATGATGAACGCGATATCCGGGAGTTGATCTGTGATATCCTGCAAGATGAAGGGTTTACGACC CGGATGGCGGGCAATTCCGA
Product: multi-sensor signal transduction histidine kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 756; Mature: 756
Protein sequence:
>756_residues MRVVDEPARGLGDQVTILDRLGRVRRNRKFRSGGTIALVLLAPCLALATFLAFSPLRDASDSTVRTLVLLADFVYILVII TLVLREVARIVASRRAQSAGSRLHLRLTAIFGVVALVPTVVVAILAVLSVNMGLEGWFSDRVSTALGNSVDAAVAYQQEH RDDLAQDARALGSFLNINRRTAPFLSDGDLRQVLSAGQSQIQRGINEAFVIDGGGEIRARGERSYQFDYDRPSDADLALA AEGDVVISEDRAQNEFRALFRLAAFPDRYLYISREVDGQIIALLDETEQTVLLYRQVEEDRGRLLFDFALLYLGFATLMI LAAIWAGLSFGERLSRPVGQLAGAAQRVGQGDLDVRVREETSDDEIAMLGRLFNQMTRQLKGQRETMIEQNAATEESRRL FDSVLSSVTAGVIGLEKGGRVDFMNRSAMRLLSLVEQRDSGLTMEAAVPEFAPLFEKLTGTTAEAVQEEIKLTRSGKQES LLVRMATRRNLDGALEGYVVAFDDVTQLVSAQRMAAWGDVARRIAHEIKNPLTPIQLSAERIKRKFSRMLEDEDKVSLEQ MTEVIVRQTNDLRRIVDEFSKFARMPEPETRVEDIVQLLNDAVMLQRAGQPDTHFVTDIPDRRVPAEVDSTMIGQALTNL LKNGGEAIESLYEKGKPDGHVPQLRVALSLTPDALHIDISDNGIGLPPDRAKLFEPYVTTRDKGTGLGLPIVKKIIEEHG GTLTLDDAEPFEDGAHPGARARVTLPRLPDPTGEET
Sequences:
>Translated_756_residues MRVVDEPARGLGDQVTILDRLGRVRRNRKFRSGGTIALVLLAPCLALATFLAFSPLRDASDSTVRTLVLLADFVYILVII TLVLREVARIVASRRAQSAGSRLHLRLTAIFGVVALVPTVVVAILAVLSVNMGLEGWFSDRVSTALGNSVDAAVAYQQEH RDDLAQDARALGSFLNINRRTAPFLSDGDLRQVLSAGQSQIQRGINEAFVIDGGGEIRARGERSYQFDYDRPSDADLALA AEGDVVISEDRAQNEFRALFRLAAFPDRYLYISREVDGQIIALLDETEQTVLLYRQVEEDRGRLLFDFALLYLGFATLMI LAAIWAGLSFGERLSRPVGQLAGAAQRVGQGDLDVRVREETSDDEIAMLGRLFNQMTRQLKGQRETMIEQNAATEESRRL FDSVLSSVTAGVIGLEKGGRVDFMNRSAMRLLSLVEQRDSGLTMEAAVPEFAPLFEKLTGTTAEAVQEEIKLTRSGKQES LLVRMATRRNLDGALEGYVVAFDDVTQLVSAQRMAAWGDVARRIAHEIKNPLTPIQLSAERIKRKFSRMLEDEDKVSLEQ MTEVIVRQTNDLRRIVDEFSKFARMPEPETRVEDIVQLLNDAVMLQRAGQPDTHFVTDIPDRRVPAEVDSTMIGQALTNL LKNGGEAIESLYEKGKPDGHVPQLRVALSLTPDALHIDISDNGIGLPPDRAKLFEPYVTTRDKGTGLGLPIVKKIIEEHG GTLTLDDAEPFEDGAHPGARARVTLPRLPDPTGEET >Mature_756_residues MRVVDEPARGLGDQVTILDRLGRVRRNRKFRSGGTIALVLLAPCLALATFLAFSPLRDASDSTVRTLVLLADFVYILVII TLVLREVARIVASRRAQSAGSRLHLRLTAIFGVVALVPTVVVAILAVLSVNMGLEGWFSDRVSTALGNSVDAAVAYQQEH RDDLAQDARALGSFLNINRRTAPFLSDGDLRQVLSAGQSQIQRGINEAFVIDGGGEIRARGERSYQFDYDRPSDADLALA AEGDVVISEDRAQNEFRALFRLAAFPDRYLYISREVDGQIIALLDETEQTVLLYRQVEEDRGRLLFDFALLYLGFATLMI LAAIWAGLSFGERLSRPVGQLAGAAQRVGQGDLDVRVREETSDDEIAMLGRLFNQMTRQLKGQRETMIEQNAATEESRRL FDSVLSSVTAGVIGLEKGGRVDFMNRSAMRLLSLVEQRDSGLTMEAAVPEFAPLFEKLTGTTAEAVQEEIKLTRSGKQES LLVRMATRRNLDGALEGYVVAFDDVTQLVSAQRMAAWGDVARRIAHEIKNPLTPIQLSAERIKRKFSRMLEDEDKVSLEQ MTEVIVRQTNDLRRIVDEFSKFARMPEPETRVEDIVQLLNDAVMLQRAGQPDTHFVTDIPDRRVPAEVDSTMIGQALTNL LKNGGEAIESLYEKGKPDGHVPQLRVALSLTPDALHIDISDNGIGLPPDRAKLFEPYVTTRDKGTGLGLPIVKKIIEEHG GTLTLDDAEPFEDGAHPGARARVTLPRLPDPTGEET
Specific function: Member of the two-component regulatory system ntrY/ntrX involved in nitrogen level control. Probably activates ntrX by phosphorylation [H]
COG id: COG5000
COG function: function code T; Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]
Homologues:
Organism=Escherichia coli, GI1788549, Length=380, Percent_Identity=26.5789473684211, Blast_Score=110, Evalue=3e-25, Organism=Escherichia coli, GI1790300, Length=341, Percent_Identity=29.6187683284457, Blast_Score=89, Evalue=1e-18, Organism=Escherichia coli, GI1790436, Length=221, Percent_Identity=27.6018099547511, Blast_Score=84, Evalue=5e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR003660 - InterPro: IPR000014 - InterPro: IPR013767 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 - InterPro: IPR017232 [H]
Pfam domain/function: PF00672 HAMP; PF02518 HATPase_c; PF00512 HisKA; PF00989 PAS [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 83475; Mature: 83475
Theoretical pI: Translated: 4.95; Mature: 4.95
Prosite motif: PS50885 HAMP ; PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRVVDEPARGLGDQVTILDRLGRVRRNRKFRSGGTIALVLLAPCLALATFLAFSPLRDAS CCCCCCHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC DSTVRTLVLLADFVYILVIITLVLREVARIVASRRAQSAGSRLHLRLTAIFGVVALVPTV CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHH VVAILAVLSVNMGLEGWFSDRVSTALGNSVDAAVAYQQEHRDDLAQDARALGSFLNINRR HHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC TAPFLSDGDLRQVLSAGQSQIQRGINEAFVIDGGGEIRARGERSYQFDYDRPSDADLALA CCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCEEECCCCCEECCCCCCCCCCEEEE AEGDVVISEDRAQNEFRALFRLAAFPDRYLYISREVDGQIIALLDETEQTVLLYRQVEED ECCCEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEECCCCHHHHHHHHHHHH RGRLLFDFALLYLGFATLMILAAIWAGLSFGERLSRPVGQLAGAAQRVGQGDLDVRVREE CCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECC TSDDEIAMLGRLFNQMTRQLKGQRETMIEQNAATEESRRLFDSVLSSVTAGVIGLEKGGR CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHEECCCCC VDFMNRSAMRLLSLVEQRDSGLTMEAAVPEFAPLFEKLTGTTAEAVQEEIKLTRSGKQES EECCCHHHHHHHHHHHHHCCCCEEHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHH LLVRMATRRNLDGALEGYVVAFDDVTQLVSAQRMAAWGDVARRIAHEIKNPLTPIQLSAE HHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH RIKRKFSRMLEDEDKVSLEQMTEVIVRQTNDLRRIVDEFSKFARMPEPETRVEDIVQLLN HHHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH DAVMLQRAGQPDTHFVTDIPDRRVPAEVDSTMIGQALTNLLKNGGEAIESLYEKGKPDGH HHHHHHHCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCC VPQLRVALSLTPDALHIDISDNGIGLPPDRAKLFEPYVTTRDKGTGLGLPIVKKIIEEHG CCEEEEEEEECCCEEEEEECCCCCCCCCCHHHHHCCHHCCCCCCCCCCHHHHHHHHHHCC GTLTLDDAEPFEDGAHPGARARVTLPRLPDPTGEET CEEEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCC >Mature Secondary Structure MRVVDEPARGLGDQVTILDRLGRVRRNRKFRSGGTIALVLLAPCLALATFLAFSPLRDAS CCCCCCHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC DSTVRTLVLLADFVYILVIITLVLREVARIVASRRAQSAGSRLHLRLTAIFGVVALVPTV CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHH VVAILAVLSVNMGLEGWFSDRVSTALGNSVDAAVAYQQEHRDDLAQDARALGSFLNINRR HHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC TAPFLSDGDLRQVLSAGQSQIQRGINEAFVIDGGGEIRARGERSYQFDYDRPSDADLALA CCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCEEECCCCCEECCCCCCCCCCEEEE AEGDVVISEDRAQNEFRALFRLAAFPDRYLYISREVDGQIIALLDETEQTVLLYRQVEED ECCCEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEECCCCHHHHHHHHHHHH RGRLLFDFALLYLGFATLMILAAIWAGLSFGERLSRPVGQLAGAAQRVGQGDLDVRVREE CCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECC TSDDEIAMLGRLFNQMTRQLKGQRETMIEQNAATEESRRLFDSVLSSVTAGVIGLEKGGR CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHEECCCCC VDFMNRSAMRLLSLVEQRDSGLTMEAAVPEFAPLFEKLTGTTAEAVQEEIKLTRSGKQES EECCCHHHHHHHHHHHHHCCCCEEHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHH LLVRMATRRNLDGALEGYVVAFDDVTQLVSAQRMAAWGDVARRIAHEIKNPLTPIQLSAE HHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH RIKRKFSRMLEDEDKVSLEQMTEVIVRQTNDLRRIVDEFSKFARMPEPETRVEDIVQLLN HHHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH DAVMLQRAGQPDTHFVTDIPDRRVPAEVDSTMIGQALTNLLKNGGEAIESLYEKGKPDGH HHHHHHHCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCC VPQLRVALSLTPDALHIDISDNGIGLPPDRAKLFEPYVTTRDKGTGLGLPIVKKIIEEHG CCEEEEEEEECCCEEEEEECCCCCCCCCCHHHHHCCHHCCCCCCCCCCHHHHHHHHHHCC GTLTLDDAEPFEDGAHPGARARVTLPRLPDPTGEET CEEEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1661370 [H]