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The map label for this gene is sodB [H]

Identifier: 89054680

GI number: 89054680

Start: 2195924

End: 2196523

Strand: Direct

Name: sodB [H]

Synonym: Jann_2189

Alternate gene names: 89054680

Gene position: 2195924-2196523 (Clockwise)

Preceding gene: 89054679

Following gene: 89054682

Centisome position: 50.86

GC content: 59.33

Gene sequence:

>600_bases
ATGGCCTTTGAACTTCCCGACCTTCCCTATGCCCACGACGCGCTTGCCGCCCACGGCATGTCCGCCGAGACGCTGGAATA
CCACCACGACCTGCACCACAACGCCTATGTTACCAACGGCAACAAGGCGATTGAGGGCACGGAATGGGAGGGTAAATCCC
TCGAAGAGATCATCACCGGCACCTATGATGCGGGCGCTGTTGCCCAGAACGGGATCTTCAACAACATCTCGCAGCTGTGG
AACCACAACCAGTTCTGGGAGATGATGGGGCCGGGCGCGTCCTCCATGCCGTCGGAGCTGGAGAGCGCGTTGACCGAGAG
CTTTGGCTCCGTCGATGAGTTCAAGTCGCAGTTCTCCGCCGCAGGTGCGGGCCAGTTCGGGTCCGGTTGGTGCTGGTTGG
TGAAGAACGCGGACGGGTCGCTGGCCGTCACGAAAACAGAGAACGGCGTCAACCCGCTTTGCTTCAATCAGACCGCGCTT
CTGGGCTGCGATGTGTGGGAGCATTCGTACTACATCGATTTCCGCAACAAGCGCCCGGATTACCTGAAAAACTTCCTCGA
CAACCTCGTCAACTGGGAAAACGTCGCCTCGCGGATGTGA

Upstream 100 bases:

>100_bases
CCGCGTGAAGGTGCGAAAGAGCCGCGCCACCCCTTGACGTTTGCCCCCCGCGACCTCCATCTGTGGCGCAATGACACACA
CAAGCCAGGGGGACCGACAC

Downstream 100 bases:

>100_bases
GGGTGCTCAAGGTTGAGCAGGGGTGTTAAGCCCCTGACACATAACCAAAAACGGCCTATTGGTGTTCGTCGCACCGGTGG
GTCGTTTCCGTTTTTCAGGG

Product: superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 199; Mature: 198

Protein sequence:

>199_residues
MAFELPDLPYAHDALAAHGMSAETLEYHHDLHHNAYVTNGNKAIEGTEWEGKSLEEIITGTYDAGAVAQNGIFNNISQLW
NHNQFWEMMGPGASSMPSELESALTESFGSVDEFKSQFSAAGAGQFGSGWCWLVKNADGSLAVTKTENGVNPLCFNQTAL
LGCDVWEHSYYIDFRNKRPDYLKNFLDNLVNWENVASRM

Sequences:

>Translated_199_residues
MAFELPDLPYAHDALAAHGMSAETLEYHHDLHHNAYVTNGNKAIEGTEWEGKSLEEIITGTYDAGAVAQNGIFNNISQLW
NHNQFWEMMGPGASSMPSELESALTESFGSVDEFKSQFSAAGAGQFGSGWCWLVKNADGSLAVTKTENGVNPLCFNQTAL
LGCDVWEHSYYIDFRNKRPDYLKNFLDNLVNWENVASRM
>Mature_198_residues
AFELPDLPYAHDALAAHGMSAETLEYHHDLHHNAYVTNGNKAIEGTEWEGKSLEEIITGTYDAGAVAQNGIFNNISQLWN
HNQFWEMMGPGASSMPSELESALTESFGSVDEFKSQFSAAGAGQFGSGWCWLVKNADGSLAVTKTENGVNPLCFNQTALL
GCDVWEHSYYIDFRNKRPDYLKNFLDNLVNWENVASRM

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=198, Percent_Identity=40.4040404040404, Blast_Score=126, Evalue=2e-29,
Organism=Homo sapiens, GI67782305, Length=198, Percent_Identity=40.4040404040404, Blast_Score=126, Evalue=2e-29,
Organism=Homo sapiens, GI67782309, Length=197, Percent_Identity=35.5329949238579, Blast_Score=102, Evalue=2e-22,
Organism=Escherichia coli, GI1787946, Length=200, Percent_Identity=53, Blast_Score=209, Evalue=1e-55,
Organism=Escherichia coli, GI1790342, Length=206, Percent_Identity=41.747572815534, Blast_Score=158, Evalue=2e-40,
Organism=Caenorhabditis elegans, GI17506561, Length=196, Percent_Identity=34.1836734693878, Blast_Score=107, Evalue=4e-24,
Organism=Caenorhabditis elegans, GI17569479, Length=194, Percent_Identity=30.9278350515464, Blast_Score=95, Evalue=2e-20,
Organism=Saccharomyces cerevisiae, GI6321796, Length=206, Percent_Identity=33.9805825242718, Blast_Score=91, Evalue=1e-19,
Organism=Drosophila melanogaster, GI17136812, Length=198, Percent_Identity=33.3333333333333, Blast_Score=101, Evalue=3e-22,

Paralogues:

None

Copy number: 2020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 900 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 22106; Mature: 21974

Theoretical pI: Translated: 4.39; Mature: 4.39

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFELPDLPYAHDALAAHGMSAETLEYHHDLHHNAYVTNGNKAIEGTEWEGKSLEEIITG
CCCCCCCCCCHHHHHHHCCCCHHHHHHHHHCCCCEEEECCCCEECCCCCCCCCHHHHHCC
TYDAGAVAQNGIFNNISQLWNHNQFWEMMGPGASSMPSELESALTESFGSVDEFKSQFSA
CCCCCHHHHCCHHHHHHHHHCCCCHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHH
AGAGQFGSGWCWLVKNADGSLAVTKTENGVNPLCFNQTALLGCDVWEHSYYIDFRNKRPD
CCCCCCCCCEEEEEECCCCCEEEEECCCCCCCEEECCHHEEECEEECCEEEEEECCCCHH
YLKNFLDNLVNWENVASRM
HHHHHHHHHCCHHHHHHCC
>Mature Secondary Structure 
AFELPDLPYAHDALAAHGMSAETLEYHHDLHHNAYVTNGNKAIEGTEWEGKSLEEIITG
CCCCCCCCCHHHHHHHCCCCHHHHHHHHHCCCCEEEECCCCEECCCCCCCCCHHHHHCC
TYDAGAVAQNGIFNNISQLWNHNQFWEMMGPGASSMPSELESALTESFGSVDEFKSQFSA
CCCCCHHHHCCHHHHHHHHHCCCCHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHH
AGAGQFGSGWCWLVKNADGSLAVTKTENGVNPLCFNQTALLGCDVWEHSYYIDFRNKRPD
CCCCCCCCCEEEEEECCCCCEEEEECCCCCCCEEECCHHEEECEEECCEEEEEECCCCHH
YLKNFLDNLVNWENVASRM
HHHHHHHHHCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9765573 [H]