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The map label for this gene is ccmH [H]

Identifier: 89054644

GI number: 89054644

Start: 2162015

End: 2162491

Strand: Direct

Name: ccmH [H]

Synonym: Jann_2153

Alternate gene names: 89054644

Gene position: 2162015-2162491 (Clockwise)

Preceding gene: 89054643

Following gene: 89054645

Centisome position: 50.07

GC content: 66.88

Gene sequence:

>477_bases
ATGAAACAGCTCCTCCTCGCTACGCTCCTCGCAGCGATCTCTTTGGCGGGGCCGTCCTTCGCGGTCCAGCCCGATGAGAT
CCTGGATGATCCGGTGCTGGAGGAACGGGCGCGGGGCATCTCGTCGGGCCTGCGGTGCCTTGTGTGCCGCAACGAGAGCA
TCGACGAGAGCAACGCCGACCTCGCCCGTGACCTGCGGCTTCTGGTGCGGGAACGTCTGGTGGCGGGTGACACGGACGAG
GAAGCGGTGGCCTATATCGTGGCGCGCTACGGCGAATATGTGCTGCTGCGCCCCACCTTTGACGGCTCCACCATTGCGTT
GTGGCTGGCAGGGCCGCTGCTTCTGCTTGCAGGTCTCGGCCTGTCGCTGACCTATGTGCGGGGCCGCGCGAGCGCTCAGG
CAAGCGGCGAGGACGGGCTGAGCCCGGAGGAGCAGGCGCGCCTGGACGCGATCCTGTCTGATGAGCCAAAGGCGTGA

Upstream 100 bases:

>100_bases
TCATGGCCCTTGGCGGGTTTCTAAGCCTGTCGGACCGGCGCTACCGGATGGCGGCGGGGGCGGCGAAACAACGGTCTTCG
ACCTCGGAGGTTCCTGCGGA

Downstream 100 bases:

>100_bases
CTGACGCAGCGTTTTGGCTTTTCTGAACCGAACGGTTTGATATGGTCCCCCAAACCCCAGGGAGGCTACACCCATGAATT
ATGAGACCATCACTGCCGTC

Product: cytochrome C biogenesis protein

Products: NA

Alternate protein names: Cytochrome c-type biogenesis protein CycL [H]

Number of amino acids: Translated: 158; Mature: 158

Protein sequence:

>158_residues
MKQLLLATLLAAISLAGPSFAVQPDEILDDPVLEERARGISSGLRCLVCRNESIDESNADLARDLRLLVRERLVAGDTDE
EAVAYIVARYGEYVLLRPTFDGSTIALWLAGPLLLLAGLGLSLTYVRGRASAQASGEDGLSPEEQARLDAILSDEPKA

Sequences:

>Translated_158_residues
MKQLLLATLLAAISLAGPSFAVQPDEILDDPVLEERARGISSGLRCLVCRNESIDESNADLARDLRLLVRERLVAGDTDE
EAVAYIVARYGEYVLLRPTFDGSTIALWLAGPLLLLAGLGLSLTYVRGRASAQASGEDGLSPEEQARLDAILSDEPKA
>Mature_158_residues
MKQLLLATLLAAISLAGPSFAVQPDEILDDPVLEERARGISSGLRCLVCRNESIDESNADLARDLRLLVRERLVAGDTDE
EAVAYIVARYGEYVLLRPTFDGSTIALWLAGPLLLLAGLGLSLTYVRGRASAQASGEDGLSPEEQARLDAILSDEPKA

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG3088

COG function: function code O; Uncharacterized protein involved in biosynthesis of c-type cytochromes

Gene ontology:

Cell location: Membrane; Single-pass membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CcmH/CycL/Ccl2/NrfF family [H]

Homologues:

Organism=Escherichia coli, GI1788522, Length=107, Percent_Identity=36.4485981308411, Blast_Score=67, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005616 [H]

Pfam domain/function: PF03918 CcmH [H]

EC number: NA

Molecular weight: Translated: 16950; Mature: 16950

Theoretical pI: Translated: 4.20; Mature: 4.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQLLLATLLAAISLAGPSFAVQPDEILDDPVLEERARGISSGLRCLVCRNESIDESNAD
CHHHHHHHHHHHHHHCCCCCCCCCHHHHCCHHHHHHHHHHHHCCEEEEECCCCCCCCCHH
LARDLRLLVRERLVAGDTDEEAVAYIVARYGEYVLLRPTFDGSTIALWLAGPLLLLAGLG
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCEEEEEECCCCCEEHHHHHHHHHHHHCCC
LSLTYVRGRASAQASGEDGLSPEEQARLDAILSDEPKA
CCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MKQLLLATLLAAISLAGPSFAVQPDEILDDPVLEERARGISSGLRCLVCRNESIDESNAD
CHHHHHHHHHHHHHHCCCCCCCCCHHHHCCHHHHHHHHHHHHCCEEEEECCCCCCCCCHH
LARDLRLLVRERLVAGDTDEEAVAYIVARYGEYVLLRPTFDGSTIALWLAGPLLLLAGLG
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCEEEEEECCCCCEEHHHHHHHHHHHHCCC
LSLTYVRGRASAQASGEDGLSPEEQARLDAILSDEPKA
CCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7715602; 11481430 [H]