Click here to switch to the map view.

The map label for this gene is ycbB [H]

Identifier: 89054636

GI number: 89054636

Start: 2152379

End: 2153974

Strand: Direct

Name: ycbB [H]

Synonym: Jann_2145

Alternate gene names: 89054636

Gene position: 2152379-2153974 (Clockwise)

Preceding gene: 89054632

Following gene: 89054637

Centisome position: 49.85

GC content: 61.22

Gene sequence:

>1596_bases
ATGTTGAAATTTGCGAAGCTTTCGCTTTTGTCGCTGGCTTTGGCGGCAACGCCGATGGTGTCGGTGATGTTGACGCCCAA
CCAAGCGGAAGCCCAGGCGTTTTCGGCTCTTCGTCAGGCAATCGCTGAGGCGTCTTCGACCGAGGAACAACTGGCCGCCT
TCTACCGTGAGCGGGATTTCCAGCCGATCTGGACGTCAGCCGACGCGAGTGACCGTCGCAACGCGCTCTTCAGCGCGCTG
GCGGAGGCCAACAACCACGGCCTTCCGACGCAACGCTATGACACCACCGATCTGGTTGCGGCATTCAGCAATGCTACAAA
CCCCTATGAGATGGGCCGCGCCGATGTTCAGGCGTCGCTCCTGTTCCTGCAATACGCGCAGGACATTCATTCCGGTTTCC
TGGAGCCCGGTGATATCGTGGGTGACATTGTCCACACCCTGCCGCGCCGGGATCCGCTGGAGCTGTTCACCGAGTTTGTG
AGCGCCAACCCCTACGAATACATCGCGACCCTGCCGCCGCAGCACCCCGAATACACACGTCTGATGCGCGCGAAGCTGCA
TCTGGAGCGGATGATTGACGAGGGTGGCTACGGCGCGACTGTTCAGGCGGGCTCTCTGACGCCGGGTGCGACGGGCAGCG
CTGTTGTGCAGTTGCGCAACCGTCTGATGGCGATGGGCTACCTTGATCGCTCAGCCACTGCGACTTACGACACGCGGCTG
CAACAGGCCGTGATGGAATTTCAGGTCGATAATGGCATCAACGCCGACGGCATCGCGGGCGGCGATACGATCCGCGCCGT
CAACCGCTCCGCCACGGAGCATCTGTCCGAGGTGATCCTTGCGATGGAGCGGCAGCGGTGGCTGAACGTGGATCGTGGTC
CGCGCCATATCTTCGTGAACCTGCCTGATTTCCACACGCGCGTCATCGACGACGGCGAAGTGACCTTCATCACCCGCTCT
GTCATCGGTTCGCGGGATCGCGACCGTCGCACGCCCGAGTTCTCGGACGAGATGGAGCATATGGTCATCAACCCCAGCTG
GTACGTGCCGCGCTCGATCGCGCGGGGCTACATCCCCTCCATCATGGCGGGGGGTGCAAACCACCTGCAGCTTATGTCCA
ACGGCCGCCCTGTGAACCGGGGTGCCGTGGATTGGAGCCGTGTTTCGGCGGGCAATTTCCCGTTTGACTTGCGACAGCCC
CCCGGTCCGCGCAACGCGCTCGGCCTCGTGAAATTCATGTTCCCCAACCAATGGAACATCTACCTGCACGATAGCCCGGA
TCAGCACCTGATGACCCATGACGTCCGCGCCTATTCTGCGGGCTGTGTGCGCCTCGATGATCCGTTTGAACTGGCCTACC
ATCTGCTGGCCGCGCAGGAAGATGATCCCGTCACCTTCTTCAACACGATCCTGAATTCCAGCCGCGAGACGCAGGTGAAT
CTGCAAACACCGCTGCCGGTTCACATCGTCTATTGGACGTCCTGGGTCGACACCGAAGGCCGCCTGAACTTCCGCAATGA
TATCTATGGGCGGAACGCGGAACTGCGCCAGGCGATCCAGAACCTTGGGGTGGAGATCAGGGGCGTGAACAGCTAA

Upstream 100 bases:

>100_bases
GAAAATCTTACGAAAACGTGAATGGACTTAGCGGTAGCATCACGCGAGTGTGAGCGCTATTAACGGCTGCCAACGTATTT
GACCCGGGGAAAAGAGTAAC

Downstream 100 bases:

>100_bases
TCGTATCCTCGCATCCACGCGGGGAATGACATGGCTGAGTTCAGCGTAAGAGACATTGCAGCGGCGCTTGGGGCGGAGGT
CCTGGGCGCCGCTGATCTTT

Product: peptidoglycan binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 531; Mature: 531

Protein sequence:

>531_residues
MLKFAKLSLLSLALAATPMVSVMLTPNQAEAQAFSALRQAIAEASSTEEQLAAFYRERDFQPIWTSADASDRRNALFSAL
AEANNHGLPTQRYDTTDLVAAFSNATNPYEMGRADVQASLLFLQYAQDIHSGFLEPGDIVGDIVHTLPRRDPLELFTEFV
SANPYEYIATLPPQHPEYTRLMRAKLHLERMIDEGGYGATVQAGSLTPGATGSAVVQLRNRLMAMGYLDRSATATYDTRL
QQAVMEFQVDNGINADGIAGGDTIRAVNRSATEHLSEVILAMERQRWLNVDRGPRHIFVNLPDFHTRVIDDGEVTFITRS
VIGSRDRDRRTPEFSDEMEHMVINPSWYVPRSIARGYIPSIMAGGANHLQLMSNGRPVNRGAVDWSRVSAGNFPFDLRQP
PGPRNALGLVKFMFPNQWNIYLHDSPDQHLMTHDVRAYSAGCVRLDDPFELAYHLLAAQEDDPVTFFNTILNSSRETQVN
LQTPLPVHIVYWTSWVDTEGRLNFRNDIYGRNAELRQAIQNLGVEIRGVNS

Sequences:

>Translated_531_residues
MLKFAKLSLLSLALAATPMVSVMLTPNQAEAQAFSALRQAIAEASSTEEQLAAFYRERDFQPIWTSADASDRRNALFSAL
AEANNHGLPTQRYDTTDLVAAFSNATNPYEMGRADVQASLLFLQYAQDIHSGFLEPGDIVGDIVHTLPRRDPLELFTEFV
SANPYEYIATLPPQHPEYTRLMRAKLHLERMIDEGGYGATVQAGSLTPGATGSAVVQLRNRLMAMGYLDRSATATYDTRL
QQAVMEFQVDNGINADGIAGGDTIRAVNRSATEHLSEVILAMERQRWLNVDRGPRHIFVNLPDFHTRVIDDGEVTFITRS
VIGSRDRDRRTPEFSDEMEHMVINPSWYVPRSIARGYIPSIMAGGANHLQLMSNGRPVNRGAVDWSRVSAGNFPFDLRQP
PGPRNALGLVKFMFPNQWNIYLHDSPDQHLMTHDVRAYSAGCVRLDDPFELAYHLLAAQEDDPVTFFNTILNSSRETQVN
LQTPLPVHIVYWTSWVDTEGRLNFRNDIYGRNAELRQAIQNLGVEIRGVNS
>Mature_531_residues
MLKFAKLSLLSLALAATPMVSVMLTPNQAEAQAFSALRQAIAEASSTEEQLAAFYRERDFQPIWTSADASDRRNALFSAL
AEANNHGLPTQRYDTTDLVAAFSNATNPYEMGRADVQASLLFLQYAQDIHSGFLEPGDIVGDIVHTLPRRDPLELFTEFV
SANPYEYIATLPPQHPEYTRLMRAKLHLERMIDEGGYGATVQAGSLTPGATGSAVVQLRNRLMAMGYLDRSATATYDTRL
QQAVMEFQVDNGINADGIAGGDTIRAVNRSATEHLSEVILAMERQRWLNVDRGPRHIFVNLPDFHTRVIDDGEVTFITRS
VIGSRDRDRRTPEFSDEMEHMVINPSWYVPRSIARGYIPSIMAGGANHLQLMSNGRPVNRGAVDWSRVSAGNFPFDLRQP
PGPRNALGLVKFMFPNQWNIYLHDSPDQHLMTHDVRAYSAGCVRLDDPFELAYHLLAAQEDDPVTFFNTILNSSRETQVN
LQTPLPVHIVYWTSWVDTEGRLNFRNDIYGRNAELRQAIQNLGVEIRGVNS

Specific function: Responsible, at least in part, for generating a meso- diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link [H]

COG id: COG2989

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1787155, Length=539, Percent_Identity=28.7569573283859, Blast_Score=171, Evalue=8e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002477
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01471 PG_binding_1; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 59453; Mature: 59453

Theoretical pI: Translated: 5.58; Mature: 5.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKFAKLSLLSLALAATPMVSVMLTPNQAEAQAFSALRQAIAEASSTEEQLAAFYRERDF
CCCHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC
QPIWTSADASDRRNALFSALAEANNHGLPTQRYDTTDLVAAFSNATNPYEMGRADVQASL
CCEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCHHHCCHHHHHHH
LFLQYAQDIHSGFLEPGDIVGDIVHTLPRRDPLELFTEFVSANPYEYIATLPPQHPEYTR
HHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCCCEEEEECCCCCCHHHH
LMRAKLHLERMIDEGGYGATVQAGSLTPGATGSAVVQLRNRLMAMGYLDRSATATYDTRL
HHHHHHHHHHHHHCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
QQAVMEFQVDNGINADGIAGGDTIRAVNRSATEHLSEVILAMERQRWLNVDRGPRHIFVN
HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE
LPDFHTRVIDDGEVTFITRSVIGSRDRDRRTPEFSDEMEHMVINPSWYVPRSIARGYIPS
CCCHHHEEECCCCEEEEEHHHHCCCCCCCCCCCHHHCCCEEEECCCCCCCHHHHHCCCHH
IMAGGANHLQLMSNGRPVNRGAVDWSRVSAGNFPFDLRQPPGPRNALGLVKFMFPNQWNI
HHCCCCCEEEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCHHHHEEEECCCCEEE
YLHDSPDQHLMTHDVRAYSAGCVRLDDPFELAYHLLAAQEDDPVTFFNTILNSSRETQVN
EEECCCCCHHHHHHHHHHCCCCEEECCHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCEEE
LQTPLPVHIVYWTSWVDTEGRLNFRNDIYGRNAELRQAIQNLGVEIRGVNS
EECCCCEEEEEEEEEECCCCCEECCCCCCCCCHHHHHHHHHCCEEEEECCC
>Mature Secondary Structure
MLKFAKLSLLSLALAATPMVSVMLTPNQAEAQAFSALRQAIAEASSTEEQLAAFYRERDF
CCCHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC
QPIWTSADASDRRNALFSALAEANNHGLPTQRYDTTDLVAAFSNATNPYEMGRADVQASL
CCEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCHHHCCHHHHHHH
LFLQYAQDIHSGFLEPGDIVGDIVHTLPRRDPLELFTEFVSANPYEYIATLPPQHPEYTR
HHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCCCEEEEECCCCCCHHHH
LMRAKLHLERMIDEGGYGATVQAGSLTPGATGSAVVQLRNRLMAMGYLDRSATATYDTRL
HHHHHHHHHHHHHCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
QQAVMEFQVDNGINADGIAGGDTIRAVNRSATEHLSEVILAMERQRWLNVDRGPRHIFVN
HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE
LPDFHTRVIDDGEVTFITRSVIGSRDRDRRTPEFSDEMEHMVINPSWYVPRSIARGYIPS
CCCHHHEEECCCCEEEEEHHHHCCCCCCCCCCCHHHCCCEEEECCCCCCCHHHHHCCCHH
IMAGGANHLQLMSNGRPVNRGAVDWSRVSAGNFPFDLRQPPGPRNALGLVKFMFPNQWNI
HHCCCCCEEEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCHHHHEEEECCCCEEE
YLHDSPDQHLMTHDVRAYSAGCVRLDDPFELAYHLLAAQEDDPVTFFNTILNSSRETQVN
EEECCCCCHHHHHHHHHHCCCCEEECCHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCEEE
LQTPLPVHIVYWTSWVDTEGRLNFRNDIYGRNAELRQAIQNLGVEIRGVNS
EECCCCEEEEEEEEEECCCCCEECCCCCCCCCHHHHHHHHHCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1989883 [H]