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The map label for this gene is ydfH [H]

Identifier: 89054598

GI number: 89054598

Start: 2115795

End: 2116529

Strand: Direct

Name: ydfH [H]

Synonym: Jann_2107

Alternate gene names: 89054598

Gene position: 2115795-2116529 (Clockwise)

Preceding gene: 89054595

Following gene: 89054599

Centisome position: 49.0

GC content: 60.54

Gene sequence:

>735_bases
ATGTTATCGACGGGCCACCCCAAGGATCAAGGTGAAATCGCGAAGCCTGTTCGGCTATCGTCCCTGTCATCTTACGAAGG
GACTTTGTCGGGCCGCGTGTACCACAGCCTGAAGGACGCGATCCTGTCACTGGCCTATCAGCCAGGCCAGATTTTGCGCA
AGGGCGATATCTGCGACCAGCTTGGCATATCCCGCAGCCCGGTATCGGAGGCGGTCACGCGGCTGGCAACCGAGGGCTTG
GTGGATGTGGTGCCCCAGGCCGGGACCTTTGTCGCGCGCTTTTCGATGGATGAGATCCGCGAAGGCGCGTTCCTGCGAGA
GGCGCTGGAACTTGCGGCGATCGAGCGGGTCGCCGGCACGATCACGGATGAGCAAATCATCTTGCTCAAGCGAAATCTGC
GGGTTCAGGAGGCGTTGGTTGAAGACGGTGATTTTCAGGGCTTCTACAAGATGGATGCCGACATGCACGAGATGATCCTG
GGGTTCACGGGCTATCGACGGCTGGCCCAGATGGCCGAAACAAGCTGGCTTCAGGTCAACCGCGCGCGGCAGTTGATCCT
GCCCAATCCAGGCCGGGTGGCAGACACGCTGGAGGAGCACCGGTCGATCATTGCCGCACTTGCGGCGCGTGACAGCGGTG
CTGCCCGTCTCGCAACACAAAATCATCTGCGGCAATTGTTGCGTTATCTGGAGCCTCTGGAGCGCGACCACCCTGAAATG
TTCGCGCCGCGATGA

Upstream 100 bases:

>100_bases
GGCGGTCACAACGGCCCGTTTTCCCTGAAGTCGCATGCGCCTCTCCCTCTGGCCCCGCTTGGGCATTGCCCAAATGTCTG
GCAATCGCTAACATTCTAGC

Downstream 100 bases:

>100_bases
GCCGTCCAAATCGCCCCCGCTATGCCGCGCGGCTCAACGCGTTCAAACAGCTCACGCCGGGCTCGGATGTGCGGGACTGG
ATCGCGGCGGCGGGACAGGT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 244; Mature: 244

Protein sequence:

>244_residues
MLSTGHPKDQGEIAKPVRLSSLSSYEGTLSGRVYHSLKDAILSLAYQPGQILRKGDICDQLGISRSPVSEAVTRLATEGL
VDVVPQAGTFVARFSMDEIREGAFLREALELAAIERVAGTITDEQIILLKRNLRVQEALVEDGDFQGFYKMDADMHEMIL
GFTGYRRLAQMAETSWLQVNRARQLILPNPGRVADTLEEHRSIIAALAARDSGAARLATQNHLRQLLRYLEPLERDHPEM
FAPR

Sequences:

>Translated_244_residues
MLSTGHPKDQGEIAKPVRLSSLSSYEGTLSGRVYHSLKDAILSLAYQPGQILRKGDICDQLGISRSPVSEAVTRLATEGL
VDVVPQAGTFVARFSMDEIREGAFLREALELAAIERVAGTITDEQIILLKRNLRVQEALVEDGDFQGFYKMDADMHEMIL
GFTGYRRLAQMAETSWLQVNRARQLILPNPGRVADTLEEHRSIIAALAARDSGAARLATQNHLRQLLRYLEPLERDHPEM
FAPR
>Mature_244_residues
MLSTGHPKDQGEIAKPVRLSSLSSYEGTLSGRVYHSLKDAILSLAYQPGQILRKGDICDQLGISRSPVSEAVTRLATEGL
VDVVPQAGTFVARFSMDEIREGAFLREALELAAIERVAGTITDEQIILLKRNLRVQEALVEDGDFQGFYKMDADMHEMIL
GFTGYRRLAQMAETSWLQVNRARQLILPNPGRVADTLEEHRSIIAALAARDSGAARLATQNHLRQLLRYLEPLERDHPEM
FAPR

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=214, Percent_Identity=27.1028037383178, Blast_Score=107, Evalue=5e-25,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 27195; Mature: 27195

Theoretical pI: Translated: 6.26; Mature: 6.26

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSTGHPKDQGEIAKPVRLSSLSSYEGTLSGRVYHSLKDAILSLAYQPGQILRKGDICDQ
CCCCCCCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHCCCCHHH
LGISRSPVSEAVTRLATEGLVDVVPQAGTFVARFSMDEIREGAFLREALELAAIERVAGT
HCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHC
ITDEQIILLKRNLRVQEALVEDGDFQGFYKMDADMHEMILGFTGYRRLAQMAETSWLQVN
CCCCEEEEHHHCCHHHHHHHCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
RARQLILPNPGRVADTLEEHRSIIAALAARDSGAARLATQNHLRQLLRYLEPLERDHPEM
CCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
FAPR
CCCC
>Mature Secondary Structure
MLSTGHPKDQGEIAKPVRLSSLSSYEGTLSGRVYHSLKDAILSLAYQPGQILRKGDICDQ
CCCCCCCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHCCCCHHH
LGISRSPVSEAVTRLATEGLVDVVPQAGTFVARFSMDEIREGAFLREALELAAIERVAGT
HCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHC
ITDEQIILLKRNLRVQEALVEDGDFQGFYKMDADMHEMILGFTGYRRLAQMAETSWLQVN
CCCCEEEEHHHCCHHHHHHHCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
RARQLILPNPGRVADTLEEHRSIIAALAARDSGAARLATQNHLRQLLRYLEPLERDHPEM
CCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
FAPR
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]