| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
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The map label for this gene is hfaC [H]
Identifier: 89054410
GI number: 89054410
Start: 1907018
End: 1908829
Strand: Direct
Name: hfaC [H]
Synonym: Jann_1919
Alternate gene names: 89054410
Gene position: 1907018-1908829 (Clockwise)
Preceding gene: 89054409
Following gene: 89054419
Centisome position: 44.16
GC content: 63.85
Gene sequence:
>1812_bases ATGGCCAGACCTCCTCTCTTGCAACTCTCCGATATCGCCCTCACGTTTGGCGGTGATCCGGTATTCTCCTCGCTCGATCT TGTGGTTCAGGCGGGCGACCGGATGGCACTGGTCGGGCGCAACGGCTCGGGCAAATCGACGTTGATGAAGGTCATGGCCG GGTTGGTGGAGGCCGATGCGGGCAGCCGGGTTCTGCCCGATGGCACCAGCGTGGGCTACCTCGAACAGGATCCGGATTTT GCGGGTTTTGAGACCCTGGGTGACTTCGCCCTGGTGACCCTTGGCCCGTCAGAGGCGTGGCGTGTTGAGGCGGCGGCGGA AGGCCTGAAATTGCGGCTGGACGCGCGGGTTGATTCGGCATCTGGCGGGGAGCGCCGCCGCGCGGCACTGGCGCGCTTGT TGGCCGAAGCGCCCGATCTGATGCTGCTGGATGAGCCCACGAACCACCTGGATATTGACGCCATCGAATGGTTGGAAGGT GAGCTGAAATCGACCAGGGCGGGGTTCATCCTGATCTCCCACGACCGGGCGTTTCTGAAGGCGCTCGCGCGGGGCACGTT GTGGCTGGACCGGGGCGTCGTGCGGCGGCGTGACGGCAGCTATGATGGGTTTGAGGATTGGCGCGACACCGTGTGGGCCG AAGAGGACATGCAAAGGCATAAGCTGGACCGGAAGATCAAGGCCGAGGCGCGATGGGCGGTGGAAGGCATCTCGGCCCGC CGCAAGCGCAACCAGGGTCGGGTGCGGGCGTTGGGGGATCTGCGGGCCGAACGCTCTGCCATGATCCGGCGGCAGGGCAC GGCGGCGATGCAGTTGGAGGCCGGGACGGCATCCGGCAAGCGGGTCATTGAAGCGCGCGGAATTTCAAAGACTTACGGCG ATGCGGTGATCCTGCATCCGTTCGATCTGCGGGTGTTGCGCGGCGACCGCGTGGCCTTTGTGGGTCCCAACGGGGCGGGC AAAACGACGCTCCTGAAAATGTTGGTGGGGGAGTTGGCACCCGACACCGGCACCGTGACCCTGGGCACGGGGTTGGAGAT GGCGGTCTTCGATCAGACCCGCTCGGCACTTGATCCGAACGCGACGCTTTGGGACACGCTGACCAATGATCCGATCCTCG GCGTCTCGGGGCGGTCGGATCAGGTTCTGGTGCGCGGCGCCGCGCGCCATGTGGTGGGCTACCTCAAGGATTTCCTGTTC GATGAGGCTCAGGCGCGGGCCCCCGTGCGGTCGCTGTCGGGCGGTGAAAAGGCGCGGCTCCTACTGGCGCGGATCATGGC GAAGGAAAGCAATCTGCTGGTCCTCGACGAGCCGACGAACGATCTGGATGTAGAGACTCTGGATCTTCTGCAAGATCTTC TGGGCGATTACCCGGGCACCGTGCTTCTGGTGTCCCACGACCGTGATTTTCTGGACCGCGTCGCCACCACAACCGTTGCG TTGGAGGGCGCAGGCCGCGCCGTCACCTATGCGGGCGGCTGGACGGATATGTTGGCGCAACGGGGCGACAAGCCGCGCCC GGATTCTGAAAAGGCCCGTTTGAGAGCCGCGAAACCGGTAGCGAAACCTGCCGAGGGGGCGGCAAAATCTGTTTTGTCCT TTACCGAAAAGCACCGGTTGGAGGAATTGCCCTCGGTGATTGCGCGCCTTGAGGCGGAAATTGCGAAGCTTTCTAATCTG TTGTCAGACCCGCAGATTTACACGACCCAGGCCGTGAAGGCGCAAAAGGCCAGTGACGCGCTGGCGGAGCGGCAGGCCTT GCTGGAAGAGGCCGAGCTTGAATGGTTAACGCTGGAGGAGAAGGCCGGCTAA
Upstream 100 bases:
>100_bases CGCGCGGAGTGGGGCCCGCGTGAGCGTGGCGGGCCGGGCAGGCGCATAGATTTGGCCCCCTACGCTTGATTATCCGGGCC GCGTGCCATAGCTCGCCCCC
Downstream 100 bases:
>100_bases CGCGACAGGCTGAGTTGCGTGATCGCCACCCCAAGCGCCATCACGGCAATTCCCAGCAATCGCAGACCGGTCACCGCATT CACTTGCGCGCCGAACAGGC
Product: ABC transporter-like protein
Products: NA
Alternate protein names: Protein HfaC [H]
Number of amino acids: Translated: 603; Mature: 602
Protein sequence:
>603_residues MARPPLLQLSDIALTFGGDPVFSSLDLVVQAGDRMALVGRNGSGKSTLMKVMAGLVEADAGSRVLPDGTSVGYLEQDPDF AGFETLGDFALVTLGPSEAWRVEAAAEGLKLRLDARVDSASGGERRRAALARLLAEAPDLMLLDEPTNHLDIDAIEWLEG ELKSTRAGFILISHDRAFLKALARGTLWLDRGVVRRRDGSYDGFEDWRDTVWAEEDMQRHKLDRKIKAEARWAVEGISAR RKRNQGRVRALGDLRAERSAMIRRQGTAAMQLEAGTASGKRVIEARGISKTYGDAVILHPFDLRVLRGDRVAFVGPNGAG KTTLLKMLVGELAPDTGTVTLGTGLEMAVFDQTRSALDPNATLWDTLTNDPILGVSGRSDQVLVRGAARHVVGYLKDFLF DEAQARAPVRSLSGGEKARLLLARIMAKESNLLVLDEPTNDLDVETLDLLQDLLGDYPGTVLLVSHDRDFLDRVATTTVA LEGAGRAVTYAGGWTDMLAQRGDKPRPDSEKARLRAAKPVAKPAEGAAKSVLSFTEKHRLEELPSVIARLEAEIAKLSNL LSDPQIYTTQAVKAQKASDALAERQALLEEAELEWLTLEEKAG
Sequences:
>Translated_603_residues MARPPLLQLSDIALTFGGDPVFSSLDLVVQAGDRMALVGRNGSGKSTLMKVMAGLVEADAGSRVLPDGTSVGYLEQDPDF AGFETLGDFALVTLGPSEAWRVEAAAEGLKLRLDARVDSASGGERRRAALARLLAEAPDLMLLDEPTNHLDIDAIEWLEG ELKSTRAGFILISHDRAFLKALARGTLWLDRGVVRRRDGSYDGFEDWRDTVWAEEDMQRHKLDRKIKAEARWAVEGISAR RKRNQGRVRALGDLRAERSAMIRRQGTAAMQLEAGTASGKRVIEARGISKTYGDAVILHPFDLRVLRGDRVAFVGPNGAG KTTLLKMLVGELAPDTGTVTLGTGLEMAVFDQTRSALDPNATLWDTLTNDPILGVSGRSDQVLVRGAARHVVGYLKDFLF DEAQARAPVRSLSGGEKARLLLARIMAKESNLLVLDEPTNDLDVETLDLLQDLLGDYPGTVLLVSHDRDFLDRVATTTVA LEGAGRAVTYAGGWTDMLAQRGDKPRPDSEKARLRAAKPVAKPAEGAAKSVLSFTEKHRLEELPSVIARLEAEIAKLSNL LSDPQIYTTQAVKAQKASDALAERQALLEEAELEWLTLEEKAG >Mature_602_residues ARPPLLQLSDIALTFGGDPVFSSLDLVVQAGDRMALVGRNGSGKSTLMKVMAGLVEADAGSRVLPDGTSVGYLEQDPDFA GFETLGDFALVTLGPSEAWRVEAAAEGLKLRLDARVDSASGGERRRAALARLLAEAPDLMLLDEPTNHLDIDAIEWLEGE LKSTRAGFILISHDRAFLKALARGTLWLDRGVVRRRDGSYDGFEDWRDTVWAEEDMQRHKLDRKIKAEARWAVEGISARR KRNQGRVRALGDLRAERSAMIRRQGTAAMQLEAGTASGKRVIEARGISKTYGDAVILHPFDLRVLRGDRVAFVGPNGAGK TTLLKMLVGELAPDTGTVTLGTGLEMAVFDQTRSALDPNATLWDTLTNDPILGVSGRSDQVLVRGAARHVVGYLKDFLFD EAQARAPVRSLSGGEKARLLLARIMAKESNLLVLDEPTNDLDVETLDLLQDLLGDYPGTVLLVSHDRDFLDRVATTTVAL EGAGRAVTYAGGWTDMLAQRGDKPRPDSEKARLRAAKPVAKPAEGAAKSVLSFTEKHRLEELPSVIARLEAEIAKLSNLL SDPQIYTTQAVKAQKASDALAERQALLEEAELEWLTLEEKAG
Specific function: Involved in attachment of the holdfast to the cell. The holdfast is a structure that allows the bacteria to firmly adhere to surfaces [H]
COG id: COG0488
COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 ABC transporter domains [H]
Homologues:
Organism=Homo sapiens, GI10947137, Length=520, Percent_Identity=28.2692307692308, Blast_Score=159, Evalue=7e-39, Organism=Homo sapiens, GI27881506, Length=527, Percent_Identity=28.0834914611006, Blast_Score=159, Evalue=1e-38, Organism=Homo sapiens, GI148612853, Length=386, Percent_Identity=32.1243523316062, Blast_Score=154, Evalue=3e-37, Organism=Homo sapiens, GI10947135, Length=516, Percent_Identity=27.3255813953488, Blast_Score=147, Evalue=2e-35, Organism=Homo sapiens, GI69354671, Length=516, Percent_Identity=27.3255813953488, Blast_Score=147, Evalue=3e-35, Organism=Homo sapiens, GI45446740, Length=274, Percent_Identity=27.7372262773723, Blast_Score=70, Evalue=9e-12, Organism=Homo sapiens, GI47078218, Length=274, Percent_Identity=27.7372262773723, Blast_Score=69, Evalue=9e-12, Organism=Escherichia coli, GI1787182, Length=637, Percent_Identity=39.7174254317111, Blast_Score=390, Evalue=1e-109, Organism=Escherichia coli, GI2367384, Length=522, Percent_Identity=33.1417624521073, Blast_Score=277, Evalue=2e-75, Organism=Escherichia coli, GI1787041, Length=545, Percent_Identity=29.5412844036697, Blast_Score=233, Evalue=3e-62, Organism=Escherichia coli, GI1789751, Length=651, Percent_Identity=29.9539170506912, Blast_Score=216, Evalue=2e-57, Organism=Escherichia coli, GI48995001, Length=505, Percent_Identity=24.3564356435644, Blast_Score=88, Evalue=2e-18, Organism=Escherichia coli, GI145693107, Length=627, Percent_Identity=25.518341307815, Blast_Score=87, Evalue=4e-18, Organism=Escherichia coli, GI48994943, Length=529, Percent_Identity=22.8733459357278, Blast_Score=84, Evalue=3e-17, Organism=Escherichia coli, GI1787758, Length=202, Percent_Identity=30.6930693069307, Blast_Score=83, Evalue=5e-17, Organism=Escherichia coli, GI1787370, Length=194, Percent_Identity=28.3505154639175, Blast_Score=82, Evalue=1e-16, Organism=Escherichia coli, GI1789672, Length=215, Percent_Identity=29.3023255813954, Blast_Score=81, Evalue=2e-16, Organism=Escherichia coli, GI1786253, Length=190, Percent_Identity=33.6842105263158, Blast_Score=81, Evalue=2e-16, Organism=Escherichia coli, GI1787164, Length=185, Percent_Identity=34.5945945945946, Blast_Score=80, Evalue=5e-16, Organism=Escherichia coli, GI1786563, Length=188, Percent_Identity=31.3829787234043, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI87081709, Length=219, Percent_Identity=25.1141552511416, Blast_Score=77, Evalue=3e-15, Organism=Escherichia coli, GI1788165, Length=232, Percent_Identity=29.3103448275862, Blast_Score=77, Evalue=4e-15, Organism=Escherichia coli, GI87081834, Length=193, Percent_Identity=31.0880829015544, Blast_Score=77, Evalue=4e-15, Organism=Escherichia coli, GI1787029, Length=216, Percent_Identity=28.2407407407407, Blast_Score=76, Evalue=5e-15, Organism=Escherichia coli, GI1788225, Length=227, Percent_Identity=27.3127753303965, Blast_Score=74, Evalue=2e-14, Organism=Escherichia coli, GI1786319, Length=208, Percent_Identity=29.8076923076923, Blast_Score=73, Evalue=4e-14, Organism=Escherichia coli, GI87081791, Length=194, Percent_Identity=29.3814432989691, Blast_Score=73, Evalue=5e-14, Organism=Escherichia coli, GI1788761, Length=238, Percent_Identity=28.1512605042017, Blast_Score=72, Evalue=1e-13, Organism=Escherichia coli, GI1789891, Length=217, Percent_Identity=26.2672811059908, Blast_Score=69, Evalue=1e-12, Organism=Escherichia coli, GI1790467, Length=210, Percent_Identity=30, Blast_Score=68, Evalue=2e-12, Organism=Escherichia coli, GI1788210, Length=174, Percent_Identity=29.8850574712644, Blast_Score=67, Evalue=3e-12, Organism=Escherichia coli, GI1786703, Length=189, Percent_Identity=32.8042328042328, Blast_Score=67, Evalue=3e-12, Organism=Escherichia coli, GI87081782, Length=244, Percent_Identity=29.0983606557377, Blast_Score=67, Evalue=4e-12, Organism=Escherichia coli, GI1787112, Length=218, Percent_Identity=32.1100917431193, Blast_Score=66, Evalue=7e-12, Organism=Escherichia coli, GI1786345, Length=168, Percent_Identity=35.7142857142857, Blast_Score=66, Evalue=8e-12, Organism=Escherichia coli, GI1786698, Length=207, Percent_Identity=27.0531400966184, Blast_Score=65, Evalue=2e-11, Organism=Escherichia coli, GI1786803, Length=167, Percent_Identity=31.1377245508982, Blast_Score=64, Evalue=2e-11, Organism=Escherichia coli, GI1787712, Length=299, Percent_Identity=23.0769230769231, Blast_Score=64, Evalue=2e-11, Organism=Escherichia coli, GI1790190, Length=196, Percent_Identity=29.5918367346939, Blast_Score=64, Evalue=4e-11, Organism=Caenorhabditis elegans, GI17559834, Length=541, Percent_Identity=26.8022181146026, Blast_Score=169, Evalue=3e-42, Organism=Caenorhabditis elegans, GI17555318, Length=526, Percent_Identity=26.0456273764259, Blast_Score=144, Evalue=1e-34, Organism=Caenorhabditis elegans, GI17553372, Length=518, Percent_Identity=28.1853281853282, Blast_Score=140, Evalue=3e-33, Organism=Caenorhabditis elegans, GI193208177, Length=216, Percent_Identity=28.7037037037037, Blast_Score=68, Evalue=1e-11, Organism=Caenorhabditis elegans, GI193202349, Length=180, Percent_Identity=30, Blast_Score=66, Evalue=6e-11, Organism=Saccharomyces cerevisiae, GI6320874, Length=534, Percent_Identity=26.9662921348315, Blast_Score=155, Evalue=2e-38, Organism=Saccharomyces cerevisiae, GI6321121, Length=365, Percent_Identity=30.958904109589, Blast_Score=139, Evalue=1e-33, Organism=Saccharomyces cerevisiae, GI6323278, Length=347, Percent_Identity=26.8011527377522, Blast_Score=107, Evalue=6e-24, Organism=Saccharomyces cerevisiae, GI6325030, Length=352, Percent_Identity=27.2727272727273, Blast_Score=106, Evalue=1e-23, Organism=Saccharomyces cerevisiae, GI6324314, Length=347, Percent_Identity=25.0720461095101, Blast_Score=102, Evalue=2e-22, Organism=Saccharomyces cerevisiae, GI6325110, Length=235, Percent_Identity=26.8085106382979, Blast_Score=66, Evalue=1e-11, Organism=Drosophila melanogaster, GI24642252, Length=549, Percent_Identity=27.5045537340619, Blast_Score=179, Evalue=5e-45, Organism=Drosophila melanogaster, GI18859989, Length=549, Percent_Identity=27.5045537340619, Blast_Score=179, Evalue=5e-45, Organism=Drosophila melanogaster, GI24666836, Length=523, Percent_Identity=28.6806883365201, Blast_Score=175, Evalue=1e-43, Organism=Drosophila melanogaster, GI24641342, Length=534, Percent_Identity=27.1535580524345, Blast_Score=167, Evalue=2e-41,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR007406 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 65522; Mature: 65391
Theoretical pI: Translated: 5.30; Mature: 5.30
Prosite motif: PS00178 AA_TRNA_LIGASE_I ; PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARPPLLQLSDIALTFGGDPVFSSLDLVVQAGDRMALVGRNGSGKSTLMKVMAGLVEADA CCCCCCEEEEEEEEEECCCHHHHHHHHHEECCCEEEEEECCCCCHHHHHHHHHHHHHCCC GSRVLPDGTSVGYLEQDPDFAGFETLGDFALVTLGPSEAWRVEAAAEGLKLRLDARVDSA CCEECCCCCCCCCCCCCCCCCCHHHHCCEEEEEECCCCCEEEHHHHCCEEEEEEEECCCC SGGERRRAALARLLAEAPDLMLLDEPTNHLDIDAIEWLEGELKSTRAGFILISHDRAFLK CCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCCEEEEECCHHHHH ALARGTLWLDRGVVRRRDGSYDGFEDWRDTVWAEEDMQRHKLDRKIKAEARWAVEGISAR HHHHCCCEECCCHHHCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH RKRNQGRVRALGDLRAERSAMIRRQGTAAMQLEAGTASGKRVIEARGISKTYGDAVILHP HHCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEEECCCCCCCCCEEEEEC FDLRVLRGDRVAFVGPNGAGKTTLLKMLVGELAPDTGTVTLGTGLEMAVFDQTRSALDPN CEEEEEECCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCCCEEEEHHHHHHHCCCC ATLWDTLTNDPILGVSGRSDQVLVRGAARHVVGYLKDFLFDEAQARAPVRSLSGGEKARL CEEECCCCCCCEEEECCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCHHHHH LLARIMAKESNLLVLDEPTNDLDVETLDLLQDLLGDYPGTVLLVSHDRDFLDRVATTTVA HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHEE LEGAGRAVTYAGGWTDMLAQRGDKPRPDSEKARLRAAKPVAKPAEGAAKSVLSFTEKHRL EECCCCEEEECCCHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH EELPSVIARLEAEIAKLSNLLSDPQIYTTQAVKAQKASDALAERQALLEEAELEWLTLEE HHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECC KAG CCC >Mature Secondary Structure ARPPLLQLSDIALTFGGDPVFSSLDLVVQAGDRMALVGRNGSGKSTLMKVMAGLVEADA CCCCCEEEEEEEEEECCCHHHHHHHHHEECCCEEEEEECCCCCHHHHHHHHHHHHHCCC GSRVLPDGTSVGYLEQDPDFAGFETLGDFALVTLGPSEAWRVEAAAEGLKLRLDARVDSA CCEECCCCCCCCCCCCCCCCCCHHHHCCEEEEEECCCCCEEEHHHHCCEEEEEEEECCCC SGGERRRAALARLLAEAPDLMLLDEPTNHLDIDAIEWLEGELKSTRAGFILISHDRAFLK CCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCCEEEEECCHHHHH ALARGTLWLDRGVVRRRDGSYDGFEDWRDTVWAEEDMQRHKLDRKIKAEARWAVEGISAR HHHHCCCEECCCHHHCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH RKRNQGRVRALGDLRAERSAMIRRQGTAAMQLEAGTASGKRVIEARGISKTYGDAVILHP HHCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEEECCCCCCCCCEEEEEC FDLRVLRGDRVAFVGPNGAGKTTLLKMLVGELAPDTGTVTLGTGLEMAVFDQTRSALDPN CEEEEEECCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCCCEEEEHHHHHHHCCCC ATLWDTLTNDPILGVSGRSDQVLVRGAARHVVGYLKDFLFDEAQARAPVRSLSGGEKARL CEEECCCCCCCEEEECCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCHHHHH LLARIMAKESNLLVLDEPTNDLDVETLDLLQDLLGDYPGTVLLVSHDRDFLDRVATTTVA HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHEE LEGAGRAVTYAGGWTDMLAQRGDKPRPDSEKARLRAAKPVAKPAEGAAKSVLSFTEKHRL EECCCCEEEECCCHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH EELPSVIARLEAEIAKLSNLLSDPQIYTTQAVKAQKASDALAERQALLEEAELEWLTLEE HHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECC KAG CCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Endonuclease; Excision [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11259647; 8150261 [H]