| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
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The map label for this gene is 89054378
Identifier: 89054378
GI number: 89054378
Start: 1877345
End: 1877890
Strand: Direct
Name: 89054378
Synonym: Jann_1887
Alternate gene names: NA
Gene position: 1877345-1877890 (Clockwise)
Preceding gene: 89054377
Following gene: 89054382
Centisome position: 43.48
GC content: 64.65
Gene sequence:
>546_bases ATGGACCGGGTGCTGAGACTTCTGGAATCCATCACATTCTGCTGCCTCTCGGCCCTGATCCTGTTCTGGATCGCGGACCG GATGCGCGGCGTGGATTTTGAGCCCTTTGAGGTCACGCCCTGCGTCGCGGGAGACTGCACGCCCTATATCGGCCCCTATC AGGGCAGTCCCTGGTCGGTCTTCACGGAGGCGCTGGACGCCCGCGGGGCGACGTCGCTGTCGCCGATCAACCTATGCACC CAACTGGCCGAGACGCTGCGGGTACGGGGCGAGGAGGCGCAGGGCGTCGACCTGATCCTTGATCTGATCACCAGCCGGGG CACCGTTGCCATCAGTCGCCCCGATGACGCGACAGTTCTGATCGCGCCGGGCCCGCGCAATGACGGGTTTCTGGATGTGC TGCGCGACGGGATCTCGTGGCAACCGTCCCGGGGATGTCACCCGATCAACTACAAACCGGTGTTCTGGCCCCTGTGGACC AGTTGGATGTTGCTGGCGAACCTGAGATTGTTCCGGGGGCGCCAAAAGGTCTGGGCCGCCCGCTAG
Upstream 100 bases:
>100_bases CATGACGGTGTGCCGCCCTTTGCCGAGACCCAGCATTATGTCCGCGTGATCCTTGGCACCCGAAGCTGACCCTCCGGCCG ATGCGCCGGAGCCTACACGC
Downstream 100 bases:
>100_bases GTTGGATCAGGCACATCTGCCCCAAGCGCGACCAGCCGTGTCTTGAGGGACGGGACACGGGGGTCGCCCGCCTCCAGCGC ATGGATGTAGGCGTGGGTCA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 181; Mature: 181
Protein sequence:
>181_residues MDRVLRLLESITFCCLSALILFWIADRMRGVDFEPFEVTPCVAGDCTPYIGPYQGSPWSVFTEALDARGATSLSPINLCT QLAETLRVRGEEAQGVDLILDLITSRGTVAISRPDDATVLIAPGPRNDGFLDVLRDGISWQPSRGCHPINYKPVFWPLWT SWMLLANLRLFRGRQKVWAAR
Sequences:
>Translated_181_residues MDRVLRLLESITFCCLSALILFWIADRMRGVDFEPFEVTPCVAGDCTPYIGPYQGSPWSVFTEALDARGATSLSPINLCT QLAETLRVRGEEAQGVDLILDLITSRGTVAISRPDDATVLIAPGPRNDGFLDVLRDGISWQPSRGCHPINYKPVFWPLWT SWMLLANLRLFRGRQKVWAAR >Mature_181_residues MDRVLRLLESITFCCLSALILFWIADRMRGVDFEPFEVTPCVAGDCTPYIGPYQGSPWSVFTEALDARGATSLSPINLCT QLAETLRVRGEEAQGVDLILDLITSRGTVAISRPDDATVLIAPGPRNDGFLDVLRDGISWQPSRGCHPINYKPVFWPLWT SWMLLANLRLFRGRQKVWAAR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20269; Mature: 20269
Theoretical pI: Translated: 5.91; Mature: 5.91
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.3 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 3.3 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDRVLRLLESITFCCLSALILFWIADRMRGVDFEPFEVTPCVAGDCTPYIGPYQGSPWSV CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCHHH FTEALDARGATSLSPINLCTQLAETLRVRGEEAQGVDLILDLITSRGTVAISRPDDATVL HHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCEEEEECCCCCEEE IAPGPRNDGFLDVLRDGISWQPSRGCHPINYKPVFWPLWTSWMLLANLRLFRGRQKVWAA EECCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHCC R C >Mature Secondary Structure MDRVLRLLESITFCCLSALILFWIADRMRGVDFEPFEVTPCVAGDCTPYIGPYQGSPWSV CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCHHH FTEALDARGATSLSPINLCTQLAETLRVRGEEAQGVDLILDLITSRGTVAISRPDDATVL HHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCEEEEECCCCCEEE IAPGPRNDGFLDVLRDGISWQPSRGCHPINYKPVFWPLWTSWMLLANLRLFRGRQKVWAA EECCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHCC R C
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA