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The map label for this gene is yomI [H]

Identifier: 89054377

GI number: 89054377

Start: 1876744

End: 1877313

Strand: Direct

Name: yomI [H]

Synonym: Jann_1886

Alternate gene names: 89054377

Gene position: 1876744-1877313 (Clockwise)

Preceding gene: 89054372

Following gene: 89054378

Centisome position: 43.46

GC content: 66.32

Gene sequence:

>570_bases
ATGTCGCGTTTTCGTCTGTCCCTTGCCGCCGTTTGCGGCGTCCTGTTCGCTCTGCCTGCCACAGCCCAAAGCGGGTTGGA
CCGGCTGGACCGGGCGATGGGCGTGCTCGATGGACGCGCGGCCACGCAATACGAATTCTCCGATCGCTTGCGCCCGACCT
CTGAAGCAGAGCGGGGTCTGCCGGAATTTGAGGGCGGGTATGACGGGCCGTTTCTGGAGGTTGCCCGTTCTGCGGCGCGC
CGCCACGGCGTGCCGGAGGATTTGTTCCTGCGTCTTGTCCAGCAGGAATCGGGCTGGAACACGGGCGCACTCAGCAGCGC
GGGCGCGATTGGTCTGGCGCAACTGATGCCCGACACCGCGACGCTTCTGGGCGTGGATCCGGCCGACCCGGTGGCCAACC
TCGATGGCGGTGCGCGGTATCTTGCGCAGCAATTCCGCCGTTTCGGAAACTGGCGTCTGGCGCTGGCCGCGTATAATGCG
GGCCCGGAGGCCGTCGTGCGCCATGACGGTGTGCCGCCCTTTGCCGAGACCCAGCATTATGTCCGCGTGATCCTTGGCAC
CCGAAGCTGA

Upstream 100 bases:

>100_bases
TCATGGAAAGCCAAAATCCGGGCCGCACGCCTCGCCCCCTAGATAAGGGGCGCCGGTCACGCTATATTCCAGCTGGTCTG
CACCGCCATCCCGAGGCTTC

Downstream 100 bases:

>100_bases
CCCTCCGGCCGATGCGCCGGAGCCTACACGCATGGACCGGGTGCTGAGACTTCTGGAATCCATCACATTCTGCTGCCTCT
CGGCCCTGATCCTGTTCTGG

Product: lytic transglycosylase

Products: 1,6-Anhydrobond [C]

Alternate protein names: NA

Number of amino acids: Translated: 189; Mature: 188

Protein sequence:

>189_residues
MSRFRLSLAAVCGVLFALPATAQSGLDRLDRAMGVLDGRAATQYEFSDRLRPTSEAERGLPEFEGGYDGPFLEVARSAAR
RHGVPEDLFLRLVQQESGWNTGALSSAGAIGLAQLMPDTATLLGVDPADPVANLDGGARYLAQQFRRFGNWRLALAAYNA
GPEAVVRHDGVPPFAETQHYVRVILGTRS

Sequences:

>Translated_189_residues
MSRFRLSLAAVCGVLFALPATAQSGLDRLDRAMGVLDGRAATQYEFSDRLRPTSEAERGLPEFEGGYDGPFLEVARSAAR
RHGVPEDLFLRLVQQESGWNTGALSSAGAIGLAQLMPDTATLLGVDPADPVANLDGGARYLAQQFRRFGNWRLALAAYNA
GPEAVVRHDGVPPFAETQHYVRVILGTRS
>Mature_188_residues
SRFRLSLAAVCGVLFALPATAQSGLDRLDRAMGVLDGRAATQYEFSDRLRPTSEAERGLPEFEGGYDGPFLEVARSAARR
HGVPEDLFLRLVQQESGWNTGALSSAGAIGLAQLMPDTATLLGVDPADPVANLDGGARYLAQQFRRFGNWRLALAAYNAG
PEAVVRHDGVPPFAETQHYVRVILGTRS

Specific function: Murein-Degrading Enzyme. Catalyzes The Cleavage Of The Glycosidic Bonds Between N-Acetylmuramic Acid And N- Acetylglucosamine Residues In Peptidoglycan. May Play A Role In Recycling Of Muropeptides During Cell Elongation And/Or Cell Division. [C]

COG id: COG0741

COG function: function code M; Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)

Gene ontology:

Cell location: Periplasmic Protein. Tightly Associated With The Murein Sacculus [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 10 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI87082441, Length=128, Percent_Identity=35.15625, Blast_Score=64, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR008258
- InterPro:   IPR016047
- InterPro:   IPR010090
- InterPro:   IPR000189 [H]

Pfam domain/function: PF01551 Peptidase_M23; PF10145 PhageMin_Tail; PF01464 SLT [H]

EC number: 3.2.1.- [C]

Molecular weight: Translated: 20371; Mature: 20240

Theoretical pI: Translated: 6.27; Mature: 6.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRFRLSLAAVCGVLFALPATAQSGLDRLDRAMGVLDGRAATQYEFSDRLRPTSEAERGL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCHHHHCC
PEFEGGYDGPFLEVARSAARRHGVPEDLFLRLVQQESGWNTGALSSAGAIGLAQLMPDTA
CCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCHH
TLLGVDPADPVANLDGGARYLAQQFRRFGNWRLALAAYNAGPEAVVRHDGVPPFAETQHY
HEEECCCCCCCCCCCCHHHHHHHHHHHHCCEEEEEEEECCCCHHHHHCCCCCCHHHHHHH
VRVILGTRS
HHHEECCCC
>Mature Secondary Structure 
SRFRLSLAAVCGVLFALPATAQSGLDRLDRAMGVLDGRAATQYEFSDRLRPTSEAERGL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCHHHHCC
PEFEGGYDGPFLEVARSAARRHGVPEDLFLRLVQQESGWNTGALSSAGAIGLAQLMPDTA
CCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCHH
TLLGVDPADPVANLDGGARYLAQQFRRFGNWRLALAAYNAGPEAVVRHDGVPPFAETQHY
HEEECCCCCCCCCCCCHHHHHHHHHHHHCCEEEEEEEECCCCHHHHHCCCCCCHHHHHHH
VRVILGTRS
HHHEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Muramic Acid Residue (N-Acetylmuramic Acid And N-Acetylglucosamine Residues) [C]

Specific reaction: Cleavage Of The Beta-1,4-Glycosidic Bond Between N-Acetylmuramic Acid And N-Acetylglucosamine Residues, Thereby Conserving The Energy In A Newly Synthesized 1,6-Anhydrobond In The Muramic Acid Residue. [C]

General reaction: Cleavage Of The Beta-1,4-Glycosidic Bond [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]