| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
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The map label for this gene is 89054271
Identifier: 89054271
GI number: 89054271
Start: 1768550
End: 1769344
Strand: Direct
Name: 89054271
Synonym: Jann_1780
Alternate gene names: NA
Gene position: 1768550-1769344 (Clockwise)
Preceding gene: 89054269
Following gene: 89054279
Centisome position: 40.96
GC content: 66.16
Gene sequence:
>795_bases ATGGACCATGTTCTACAAGATCATTTGCCGTCCGCGCCGTGGATGGCAGAGGCCACGCGCCGGTTGCCGGGCTTGCAGCC GTTGGAGAGCGGCGCGCCGTGGCTGCAAAGGGACGAGGCGTTTGCCGGACAGATGGCGGTGCGGGATCAACTGGTTGCAG AGCGCCGTGCGGAGGTGATTGCGCAAATGCCGGGCTGTCAGGGCGCCGTGGCGGAGTTATATGGCGCGGTGCTGCGAGGG CTCGCCGGGTGTGATGGCTACGCGGTTGGGCGAGGGGCGTGTGTGCGCCCCGATGGCGTAGATGTGCCGTTGGACGAGGG CGACCCCCTCGGCACGTTGGCGCGGCTGGTGCAGCAGGATCTGTGCGTTTTGGAGAAGCCCGAGGGCGGTATGGAGCATG TAATGAGCGCCGCGATCCTGTGCTTTCCGGCCAGTTGGTCCCTGGCCGAGAAGATTGGCCACCCGCTGTCGCGCATTCAC GGACCGGTGACGGAGTATGATGGTCTGATGGAGCGGCGGGTGCAGCGCGTGTTCGACCATTTGCGAGAGGACAGCCCGGT CTGGCGACAAAACGCGCTGATCTACGACGACCCGCAGCTGTTCCAGCCCCGCCGCATGGACGCCAGGCGGCCCAAGCCCA CGGGCGCGGGGTATCTGCGGTCGGAAAAACAGGTGCTGATGCGGTTACCCGTCACGCGGGCGGTGGTGTTCTCGATCCAC ACCTATGTCGTGGCGATGGAGGATCTGACGGCGGATCAGCGCGCCGGGCTGGCGGGTGTTGACCGGGTGACGTGA
Upstream 100 bases:
>100_bases TTGCGGCGATAGGCTTGGTTCATGGTCACTCTCCCTTAGGATGAGCCTTGCGCGGTCAGATCGCCTCCGCGTGTCAGATC GCGCCGCGAAAGGGTCGGAA
Downstream 100 bases:
>100_bases GGGGGGGGGGGGCGCGGGGGCGGGAAAAGAGGGGGCTCTGCCCCATGGAACTTTTCAGAAAAAGTCCCACTCCCCGGGAT ATTAAGAGAACGGGGAAGAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 264; Mature: 264
Protein sequence:
>264_residues MDHVLQDHLPSAPWMAEATRRLPGLQPLESGAPWLQRDEAFAGQMAVRDQLVAERRAEVIAQMPGCQGAVAELYGAVLRG LAGCDGYAVGRGACVRPDGVDVPLDEGDPLGTLARLVQQDLCVLEKPEGGMEHVMSAAILCFPASWSLAEKIGHPLSRIH GPVTEYDGLMERRVQRVFDHLREDSPVWRQNALIYDDPQLFQPRRMDARRPKPTGAGYLRSEKQVLMRLPVTRAVVFSIH TYVVAMEDLTADQRAGLAGVDRVT
Sequences:
>Translated_264_residues MDHVLQDHLPSAPWMAEATRRLPGLQPLESGAPWLQRDEAFAGQMAVRDQLVAERRAEVIAQMPGCQGAVAELYGAVLRG LAGCDGYAVGRGACVRPDGVDVPLDEGDPLGTLARLVQQDLCVLEKPEGGMEHVMSAAILCFPASWSLAEKIGHPLSRIH GPVTEYDGLMERRVQRVFDHLREDSPVWRQNALIYDDPQLFQPRRMDARRPKPTGAGYLRSEKQVLMRLPVTRAVVFSIH TYVVAMEDLTADQRAGLAGVDRVT >Mature_264_residues MDHVLQDHLPSAPWMAEATRRLPGLQPLESGAPWLQRDEAFAGQMAVRDQLVAERRAEVIAQMPGCQGAVAELYGAVLRG LAGCDGYAVGRGACVRPDGVDVPLDEGDPLGTLARLVQQDLCVLEKPEGGMEHVMSAAILCFPASWSLAEKIGHPLSRIH GPVTEYDGLMERRVQRVFDHLREDSPVWRQNALIYDDPQLFQPRRMDARRPKPTGAGYLRSEKQVLMRLPVTRAVVFSIH TYVVAMEDLTADQRAGLAGVDRVT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29109; Mature: 29109
Theoretical pI: Translated: 5.90; Mature: 5.90
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 5.7 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 5.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDHVLQDHLPSAPWMAEATRRLPGLQPLESGAPWLQRDEAFAGQMAVRDQLVAERRAEVI CCCCHHHHCCCCCHHHHHHHHCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH AQMPGCQGAVAELYGAVLRGLAGCDGYAVGRGACVRPDGVDVPLDEGDPLGTLARLVQQD HHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHH LCVLEKPEGGMEHVMSAAILCFPASWSLAEKIGHPLSRIHGPVTEYDGLMERRVQRVFDH HHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHHH LREDSPVWRQNALIYDDPQLFQPRRMDARRPKPTGAGYLRSEKQVLMRLPVTRAVVFSIH HHCCCCCHHHCCEEECCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHH TYVVAMEDLTADQRAGLAGVDRVT HHHHHHHHHCHHHHCCCCCCCCCC >Mature Secondary Structure MDHVLQDHLPSAPWMAEATRRLPGLQPLESGAPWLQRDEAFAGQMAVRDQLVAERRAEVI CCCCHHHHCCCCCHHHHHHHHCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH AQMPGCQGAVAELYGAVLRGLAGCDGYAVGRGACVRPDGVDVPLDEGDPLGTLARLVQQD HHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHH LCVLEKPEGGMEHVMSAAILCFPASWSLAEKIGHPLSRIHGPVTEYDGLMERRVQRVFDH HHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHHH LREDSPVWRQNALIYDDPQLFQPRRMDARRPKPTGAGYLRSEKQVLMRLPVTRAVVFSIH HHCCCCCHHHCCEEECCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHH TYVVAMEDLTADQRAGLAGVDRVT HHHHHHHHHCHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA