| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
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The map label for this gene is 89054269
Identifier: 89054269
GI number: 89054269
Start: 1766245
End: 1767144
Strand: Direct
Name: 89054269
Synonym: Jann_1778
Alternate gene names: NA
Gene position: 1766245-1767144 (Clockwise)
Preceding gene: 89054267
Following gene: 89054271
Centisome position: 40.9
GC content: 62.22
Gene sequence:
>900_bases TTGAGAGTTTTGGTGCGCGTTTGCGTAGGTTTGGGGATCCTCACCCTCGGCGCGAGCTATCTGGGGGCTTTGCACCCTCT GGGCGATTCTCTGGCGGTGTTCAGAAACTGGATCGCGGGCGCGTTGCTGGCCTTTGCCGTGATCATGATCTTTCTGCGGC CCCGCGCGCTTGGCGTGGCGGTATCGGTTGGAGCGGGCATCGCGCTGGTCGGGGCGACGCCCGCTGAAATAGGGGCCATG CATTCCAGCGAGTTTGTCCGGCCCCAGACAATCTACCAGAAAAACCTGCTTTTCGCCCTGCCGGATGCCACCGCAATTCT GGACGATATCGCTGAGGTCAGCCCCGATCACATGACCTTGCAGGAGGTGAACGCCAGCAACCGCGCGCAGGTTCTGGCCG CTTTGCCAAACTTCTATGCGCGGCATTTCTGCCCATTTGCCTCCGTCGGTGGGGTCGCGGTGTTGTCGCGGTACGAGGTT GTGGAGGGCAGTGAATTTTGTATCGAAGGGCGCGGGATGGCCGGGTTTCAGGTGCTGAGCCCGCAAGGGCCGTTATGGGT CGTGTCGGTGCATCTCCACTGGCCCTATCCTTACAGTCAGCGGGCGCAGGTGGAGGAATTGACACCGATTGTCGCCGCGC TGGAGGGCCCGGTGCTGATCGGCGGGGACTTCAACATGGTGCCGTGGTCGTGGGTCATGCGGGAGTTTGAACGGGCCAGC GGGTCGCGGGTGCCACATCCGCTGAGTGGCACGATCCAATTGTTCGATGGCTGGTTTGCACCGCCGATTGACCACGTGAT CCTCCCGGGGCGGGGCGGCATCCAATCCGTGCACCCAAGATTGGGGTCCGATCACCGGGCGATTGTGGGGATGTTCGAGA TCACTGAACCCGGCGTCTAG
Upstream 100 bases:
>100_bases GCGAGGTACGGATTCCCGCAACCTCTGTGTCATTGTCCTCACGCCCCCGTGCACCCATGTTCCCAACACGTGAACAAAAA CGGACAGTGCGGTGCGGATA
Downstream 100 bases:
>100_bases GAGGCCCCCATCAGCGCCGCATCGAAGGGATAGGTCGTCAGGTTCTCGTACCCGTCTTCGGTGATCAGCACCTGATCTTC CAGCTTGATGCAGAAATCGC
Product: endonuclease/exonuclease/phosphatase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 299; Mature: 299
Protein sequence:
>299_residues MRVLVRVCVGLGILTLGASYLGALHPLGDSLAVFRNWIAGALLAFAVIMIFLRPRALGVAVSVGAGIALVGATPAEIGAM HSSEFVRPQTIYQKNLLFALPDATAILDDIAEVSPDHMTLQEVNASNRAQVLAALPNFYARHFCPFASVGGVAVLSRYEV VEGSEFCIEGRGMAGFQVLSPQGPLWVVSVHLHWPYPYSQRAQVEELTPIVAALEGPVLIGGDFNMVPWSWVMREFERAS GSRVPHPLSGTIQLFDGWFAPPIDHVILPGRGGIQSVHPRLGSDHRAIVGMFEITEPGV
Sequences:
>Translated_299_residues MRVLVRVCVGLGILTLGASYLGALHPLGDSLAVFRNWIAGALLAFAVIMIFLRPRALGVAVSVGAGIALVGATPAEIGAM HSSEFVRPQTIYQKNLLFALPDATAILDDIAEVSPDHMTLQEVNASNRAQVLAALPNFYARHFCPFASVGGVAVLSRYEV VEGSEFCIEGRGMAGFQVLSPQGPLWVVSVHLHWPYPYSQRAQVEELTPIVAALEGPVLIGGDFNMVPWSWVMREFERAS GSRVPHPLSGTIQLFDGWFAPPIDHVILPGRGGIQSVHPRLGSDHRAIVGMFEITEPGV >Mature_299_residues MRVLVRVCVGLGILTLGASYLGALHPLGDSLAVFRNWIAGALLAFAVIMIFLRPRALGVAVSVGAGIALVGATPAEIGAM HSSEFVRPQTIYQKNLLFALPDATAILDDIAEVSPDHMTLQEVNASNRAQVLAALPNFYARHFCPFASVGGVAVLSRYEV VEGSEFCIEGRGMAGFQVLSPQGPLWVVSVHLHWPYPYSQRAQVEELTPIVAALEGPVLIGGDFNMVPWSWVMREFERAS GSRVPHPLSGTIQLFDGWFAPPIDHVILPGRGGIQSVHPRLGSDHRAIVGMFEITEPGV
Specific function: Unknown
COG id: COG3021
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32177; Mature: 32177
Theoretical pI: Translated: 6.34; Mature: 6.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRVLVRVCVGLGILTLGASYLGALHPLGDSLAVFRNWIAGALLAFAVIMIFLRPRALGVA CHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEE VSVGAGIALVGATPAEIGAMHSSEFVRPQTIYQKNLLFALPDATAILDDIAEVSPDHMTL EECCCCEEEECCCHHHHHCCCCCCCCCHHHHHHCCCEEECCCHHHHHHHHHHCCCCCEEH QEVNASNRAQVLAALPNFYARHFCPFASVGGVAVLSRYEVVEGSEFCIEGRGMAGFQVLS HHCCCCCHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHEECCCEEEEECCCCCCEEEEC PQGPLWVVSVHLHWPYPYSQRAQVEELTPIVAALEGPVLIGGDFNMVPWSWVMREFERAS CCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHHHC GSRVPHPLSGTIQLFDGWFAPPIDHVILPGRGGIQSVHPRLGSDHRAIVGMFEITEPGV CCCCCCCCCCEEEEECCCCCCCCCEEEECCCCCCCHHCCCCCCCCEEEEEEEEECCCCC >Mature Secondary Structure MRVLVRVCVGLGILTLGASYLGALHPLGDSLAVFRNWIAGALLAFAVIMIFLRPRALGVA CHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEE VSVGAGIALVGATPAEIGAMHSSEFVRPQTIYQKNLLFALPDATAILDDIAEVSPDHMTL EECCCCEEEECCCHHHHHCCCCCCCCCHHHHHHCCCEEECCCHHHHHHHHHHCCCCCEEH QEVNASNRAQVLAALPNFYARHFCPFASVGGVAVLSRYEVVEGSEFCIEGRGMAGFQVLS HHCCCCCHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHEECCCEEEEECCCCCCEEEEC PQGPLWVVSVHLHWPYPYSQRAQVEELTPIVAALEGPVLIGGDFNMVPWSWVMREFERAS CCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHHHC GSRVPHPLSGTIQLFDGWFAPPIDHVILPGRGGIQSVHPRLGSDHRAIVGMFEITEPGV CCCCCCCCCCEEEEECCCCCCCCCEEEECCCCCCCHHCCCCCCCCEEEEEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA