Definition Jannaschia sp. CCS1 chromosome, complete genome.
Accession NC_007802
Length 4,317,977

Click here to switch to the map view.

The map label for this gene is 89054269

Identifier: 89054269

GI number: 89054269

Start: 1766245

End: 1767144

Strand: Direct

Name: 89054269

Synonym: Jann_1778

Alternate gene names: NA

Gene position: 1766245-1767144 (Clockwise)

Preceding gene: 89054267

Following gene: 89054271

Centisome position: 40.9

GC content: 62.22

Gene sequence:

>900_bases
TTGAGAGTTTTGGTGCGCGTTTGCGTAGGTTTGGGGATCCTCACCCTCGGCGCGAGCTATCTGGGGGCTTTGCACCCTCT
GGGCGATTCTCTGGCGGTGTTCAGAAACTGGATCGCGGGCGCGTTGCTGGCCTTTGCCGTGATCATGATCTTTCTGCGGC
CCCGCGCGCTTGGCGTGGCGGTATCGGTTGGAGCGGGCATCGCGCTGGTCGGGGCGACGCCCGCTGAAATAGGGGCCATG
CATTCCAGCGAGTTTGTCCGGCCCCAGACAATCTACCAGAAAAACCTGCTTTTCGCCCTGCCGGATGCCACCGCAATTCT
GGACGATATCGCTGAGGTCAGCCCCGATCACATGACCTTGCAGGAGGTGAACGCCAGCAACCGCGCGCAGGTTCTGGCCG
CTTTGCCAAACTTCTATGCGCGGCATTTCTGCCCATTTGCCTCCGTCGGTGGGGTCGCGGTGTTGTCGCGGTACGAGGTT
GTGGAGGGCAGTGAATTTTGTATCGAAGGGCGCGGGATGGCCGGGTTTCAGGTGCTGAGCCCGCAAGGGCCGTTATGGGT
CGTGTCGGTGCATCTCCACTGGCCCTATCCTTACAGTCAGCGGGCGCAGGTGGAGGAATTGACACCGATTGTCGCCGCGC
TGGAGGGCCCGGTGCTGATCGGCGGGGACTTCAACATGGTGCCGTGGTCGTGGGTCATGCGGGAGTTTGAACGGGCCAGC
GGGTCGCGGGTGCCACATCCGCTGAGTGGCACGATCCAATTGTTCGATGGCTGGTTTGCACCGCCGATTGACCACGTGAT
CCTCCCGGGGCGGGGCGGCATCCAATCCGTGCACCCAAGATTGGGGTCCGATCACCGGGCGATTGTGGGGATGTTCGAGA
TCACTGAACCCGGCGTCTAG

Upstream 100 bases:

>100_bases
GCGAGGTACGGATTCCCGCAACCTCTGTGTCATTGTCCTCACGCCCCCGTGCACCCATGTTCCCAACACGTGAACAAAAA
CGGACAGTGCGGTGCGGATA

Downstream 100 bases:

>100_bases
GAGGCCCCCATCAGCGCCGCATCGAAGGGATAGGTCGTCAGGTTCTCGTACCCGTCTTCGGTGATCAGCACCTGATCTTC
CAGCTTGATGCAGAAATCGC

Product: endonuclease/exonuclease/phosphatase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MRVLVRVCVGLGILTLGASYLGALHPLGDSLAVFRNWIAGALLAFAVIMIFLRPRALGVAVSVGAGIALVGATPAEIGAM
HSSEFVRPQTIYQKNLLFALPDATAILDDIAEVSPDHMTLQEVNASNRAQVLAALPNFYARHFCPFASVGGVAVLSRYEV
VEGSEFCIEGRGMAGFQVLSPQGPLWVVSVHLHWPYPYSQRAQVEELTPIVAALEGPVLIGGDFNMVPWSWVMREFERAS
GSRVPHPLSGTIQLFDGWFAPPIDHVILPGRGGIQSVHPRLGSDHRAIVGMFEITEPGV

Sequences:

>Translated_299_residues
MRVLVRVCVGLGILTLGASYLGALHPLGDSLAVFRNWIAGALLAFAVIMIFLRPRALGVAVSVGAGIALVGATPAEIGAM
HSSEFVRPQTIYQKNLLFALPDATAILDDIAEVSPDHMTLQEVNASNRAQVLAALPNFYARHFCPFASVGGVAVLSRYEV
VEGSEFCIEGRGMAGFQVLSPQGPLWVVSVHLHWPYPYSQRAQVEELTPIVAALEGPVLIGGDFNMVPWSWVMREFERAS
GSRVPHPLSGTIQLFDGWFAPPIDHVILPGRGGIQSVHPRLGSDHRAIVGMFEITEPGV
>Mature_299_residues
MRVLVRVCVGLGILTLGASYLGALHPLGDSLAVFRNWIAGALLAFAVIMIFLRPRALGVAVSVGAGIALVGATPAEIGAM
HSSEFVRPQTIYQKNLLFALPDATAILDDIAEVSPDHMTLQEVNASNRAQVLAALPNFYARHFCPFASVGGVAVLSRYEV
VEGSEFCIEGRGMAGFQVLSPQGPLWVVSVHLHWPYPYSQRAQVEELTPIVAALEGPVLIGGDFNMVPWSWVMREFERAS
GSRVPHPLSGTIQLFDGWFAPPIDHVILPGRGGIQSVHPRLGSDHRAIVGMFEITEPGV

Specific function: Unknown

COG id: COG3021

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 32177; Mature: 32177

Theoretical pI: Translated: 6.34; Mature: 6.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVLVRVCVGLGILTLGASYLGALHPLGDSLAVFRNWIAGALLAFAVIMIFLRPRALGVA
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEE
VSVGAGIALVGATPAEIGAMHSSEFVRPQTIYQKNLLFALPDATAILDDIAEVSPDHMTL
EECCCCEEEECCCHHHHHCCCCCCCCCHHHHHHCCCEEECCCHHHHHHHHHHCCCCCEEH
QEVNASNRAQVLAALPNFYARHFCPFASVGGVAVLSRYEVVEGSEFCIEGRGMAGFQVLS
HHCCCCCHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHEECCCEEEEECCCCCCEEEEC
PQGPLWVVSVHLHWPYPYSQRAQVEELTPIVAALEGPVLIGGDFNMVPWSWVMREFERAS
CCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHHHC
GSRVPHPLSGTIQLFDGWFAPPIDHVILPGRGGIQSVHPRLGSDHRAIVGMFEITEPGV
CCCCCCCCCCEEEEECCCCCCCCCEEEECCCCCCCHHCCCCCCCCEEEEEEEEECCCCC
>Mature Secondary Structure
MRVLVRVCVGLGILTLGASYLGALHPLGDSLAVFRNWIAGALLAFAVIMIFLRPRALGVA
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEE
VSVGAGIALVGATPAEIGAMHSSEFVRPQTIYQKNLLFALPDATAILDDIAEVSPDHMTL
EECCCCEEEECCCHHHHHCCCCCCCCCHHHHHHCCCEEECCCHHHHHHHHHHCCCCCEEH
QEVNASNRAQVLAALPNFYARHFCPFASVGGVAVLSRYEVVEGSEFCIEGRGMAGFQVLS
HHCCCCCHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHEECCCEEEEECCCCCCEEEEC
PQGPLWVVSVHLHWPYPYSQRAQVEELTPIVAALEGPVLIGGDFNMVPWSWVMREFERAS
CCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHHHC
GSRVPHPLSGTIQLFDGWFAPPIDHVILPGRGGIQSVHPRLGSDHRAIVGMFEITEPGV
CCCCCCCCCCEEEEECCCCCCCCCEEEECCCCCCCHHCCCCCCCCEEEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA