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The map label for this gene is yiaD [H]

Identifier: 89054158

GI number: 89054158

Start: 1651403

End: 1652062

Strand: Reverse

Name: yiaD [H]

Synonym: Jann_1667

Alternate gene names: 89054158

Gene position: 1652062-1651403 (Counterclockwise)

Preceding gene: 89054159

Following gene: 89054157

Centisome position: 38.26

GC content: 68.18

Gene sequence:

>660_bases
ATGGCACTTCTCATCAAACCAATTCTTCTCGCAAGCGCGGCGTCTCTGGCATTGACCGCCTGCGTCGGCAACACCGTGGT
TCCGGGCGGGCCCGAGCAGAACCGCACCCGCGACGGCGCGGTCTTGGGTGGGCTTCTTGGCGGCGTTTTGGGCGCAGCCT
CCGGCGACGACAACCGGGGCCGCAACGCCGTTCTGGGCGCCGCCGTGGGCGCGGCCGCTGGCGGGGCCATCGGCAACGCG
CTGGATCGTCAGGCGCAGGACCTGCGCGGATCGCTCAGCAATGAGCGCATCCTGATCGAAAACACCGGTGAGGCGCTGAT
CCTGACCCTGCCGGAGGGCATCCTGTTTGACGTCGACAGCGCCGCCATCCGCGCGGGCCTGCAAGGCGACCTGCGGGCGC
TGGCGTTCAACCTGAACCAATACCCCGACACCCGCGTCGTCGTGGAAGGGCACACCGACAATACCGGGTCCGCGTCCTAC
AACCAAGACCTCTCCACCCGCCGCGCGCAGGCCGTCTCGGGCGTGCTGCTGGAAGGTGGCGTCGCGCCGTTCCGGGTGCA
GTCGGTCGGACGCGGGGAGAGCGCCCCGATTGCCACGAACCTCACGCCGGAGGGACGTCAACAAAACCGCCGGGTCGAGG
TCATTATTCGTCCGCAATAG

Upstream 100 bases:

>100_bases
GCGCGCCCTTTTCCCCCTGTGCGCAGGCCACGTGCCTGATATAGAGGTCGCAATAAGTCTCGTCGGGAAACGGGGCACAG
GCTTACAAGGGCAAGCACTC

Downstream 100 bases:

>100_bases
CGGCATATAGAAGCTATTCCTTTAGCGGCCCGCCTCAATCGGCGGGCCGTTTTGCGGTGTTTCTCTGGACAGCGGGTCGC
CACTGGTCATATCCTTTGAC

Product: OmpA/MotB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 218

Protein sequence:

>219_residues
MALLIKPILLASAASLALTACVGNTVVPGGPEQNRTRDGAVLGGLLGGVLGAASGDDNRGRNAVLGAAVGAAAGGAIGNA
LDRQAQDLRGSLSNERILIENTGEALILTLPEGILFDVDSAAIRAGLQGDLRALAFNLNQYPDTRVVVEGHTDNTGSASY
NQDLSTRRAQAVSGVLLEGGVAPFRVQSVGRGESAPIATNLTPEGRQQNRRVEVIIRPQ

Sequences:

>Translated_219_residues
MALLIKPILLASAASLALTACVGNTVVPGGPEQNRTRDGAVLGGLLGGVLGAASGDDNRGRNAVLGAAVGAAAGGAIGNA
LDRQAQDLRGSLSNERILIENTGEALILTLPEGILFDVDSAAIRAGLQGDLRALAFNLNQYPDTRVVVEGHTDNTGSASY
NQDLSTRRAQAVSGVLLEGGVAPFRVQSVGRGESAPIATNLTPEGRQQNRRVEVIIRPQ
>Mature_218_residues
ALLIKPILLASAASLALTACVGNTVVPGGPEQNRTRDGAVLGGLLGGVLGAASGDDNRGRNAVLGAAVGAAAGGAIGNAL
DRQAQDLRGSLSNERILIENTGEALILTLPEGILFDVDSAAIRAGLQGDLRALAFNLNQYPDTRVVVEGHTDNTGSASYN
QDLSTRRAQAVSGVLLEGGVAPFRVQSVGRGESAPIATNLTPEGRQQNRRVEVIIRPQ

Specific function: Unknown

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential). Cell inner membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=205, Percent_Identity=38.0487804878049, Blast_Score=103, Evalue=7e-24,
Organism=Escherichia coli, GI1788957, Length=140, Percent_Identity=32.8571428571429, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787191, Length=121, Percent_Identity=33.8842975206612, Blast_Score=63, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 22450; Mature: 22318

Theoretical pI: Translated: 5.29; Mature: 5.29

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALLIKPILLASAASLALTACVGNTVVPGGPEQNRTRDGAVLGGLLGGVLGAASGDDNRG
CCEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC
RNAVLGAAVGAAAGGAIGNALDRQAQDLRGSLSNERILIENTGEALILTLPEGILFDVDS
CCEEHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEEECCCCEEEECCH
AAIRAGLQGDLRALAFNLNQYPDTRVVVEGHTDNTGSASYNQDLSTRRAQAVSGVLLEGG
HHHHHCCCCCCEEEEEECCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCC
VAPFRVQSVGRGESAPIATNLTPEGRQQNRRVEVIIRPQ
CCCEEEECCCCCCCCCEEECCCCCCCCCCCEEEEEEECC
>Mature Secondary Structure 
ALLIKPILLASAASLALTACVGNTVVPGGPEQNRTRDGAVLGGLLGGVLGAASGDDNRG
CEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC
RNAVLGAAVGAAAGGAIGNALDRQAQDLRGSLSNERILIENTGEALILTLPEGILFDVDS
CCEEHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEEECCCCEEEECCH
AAIRAGLQGDLRALAFNLNQYPDTRVVVEGHTDNTGSASYNQDLSTRRAQAVSGVLLEGG
HHHHHCCCCCCEEEEEECCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCC
VAPFRVQSVGRGESAPIATNLTPEGRQQNRRVEVIIRPQ
CCCEEEECCCCCCCCCEEECCCCCCCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2180922 [H]