Click here to switch to the map view.

The map label for this gene is scpB [H]

Identifier: 89054002

GI number: 89054002

Start: 1481385

End: 1482071

Strand: Direct

Name: scpB [H]

Synonym: Jann_1511

Alternate gene names: 89054002

Gene position: 1481385-1482071 (Clockwise)

Preceding gene: 89054001

Following gene: 89054003

Centisome position: 34.31

GC content: 62.74

Gene sequence:

>687_bases
ATGACGGACACGCCGAAGCAAACCGAGGAAAGCCTGTTTCGCGCCCCCCCACTGGCGGAACAGGAACGCATGGTGGAGGC
GCTTTTGTTCGCCTCGGCTGATCCCGTCAGTCTGGCGGAGATGGAAGCGCGGATGCCCCACGGATCTGACCCGGCGGAGG
CGCTGTTTTTGCTGCGCAAACGCTATGAAGGGCGCGGCGTTCAGGTCGCGAAGGTCGGCGATAACTGGGCGTTTCGCACC
GCGGCCGACCTGGGATTTCTGATGGCGCGCGACCAGGTGGAGCAGCGCAAACTGAGCCGTGCGGCCATTGAGACGCTGGC
CATCATTGCCTACCACCAACCCGTCACACGGGCAGAAATTGAGGAAATTCGCGGTGTTAGCGTCAGTCGCGGCACGATAG
ACCAGCTGATTGAGCTGGATTGGATCAAGTTCGGCCGCCGTCGCATGACGCCCGGGCGGCCTGTCACCTATGTGGTCACG
CAGCTGTTTCTGGATCATTTCGGGCTCGAATCCGCGCGCGATTTGCCGGGTCTCAAGGAACTCCGTGACGCGGGGCTGCT
CGAATCCCGTCCGCCCGATGCTGACGACGGAGCGGAACCGCGCGATGAGAATACGTCGGACATGTTTGACGACGACGCGG
ATGCCTCGCTGGACGACGATAGCCCGCTGTTCGAGGACGACGCCTGA

Upstream 100 bases:

>100_bases
CTGCAAACTTCGCGGCAGCCCTGGAGCTTGCGAAAGCGGGGCGTGTCGAGATCCGCCAGGCGGACACGTTCTCCCCCATC
CAACTGCGCCGGAAAGAGCC

Downstream 100 bases:

>100_bases
TTTTCGCCGCACTTCTTTGCAACATCCACCCATACAGGCAAAAAAAGGCTCCATCCCATGGACAGAATTATCAACATGAT
CGTGCGTCAGGTGATCGGGC

Product: condensin subunit ScpB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 228; Mature: 227

Protein sequence:

>228_residues
MTDTPKQTEESLFRAPPLAEQERMVEALLFASADPVSLAEMEARMPHGSDPAEALFLLRKRYEGRGVQVAKVGDNWAFRT
AADLGFLMARDQVEQRKLSRAAIETLAIIAYHQPVTRAEIEEIRGVSVSRGTIDQLIELDWIKFGRRRMTPGRPVTYVVT
QLFLDHFGLESARDLPGLKELRDAGLLESRPPDADDGAEPRDENTSDMFDDDADASLDDDSPLFEDDA

Sequences:

>Translated_228_residues
MTDTPKQTEESLFRAPPLAEQERMVEALLFASADPVSLAEMEARMPHGSDPAEALFLLRKRYEGRGVQVAKVGDNWAFRT
AADLGFLMARDQVEQRKLSRAAIETLAIIAYHQPVTRAEIEEIRGVSVSRGTIDQLIELDWIKFGRRRMTPGRPVTYVVT
QLFLDHFGLESARDLPGLKELRDAGLLESRPPDADDGAEPRDENTSDMFDDDADASLDDDSPLFEDDA
>Mature_227_residues
TDTPKQTEESLFRAPPLAEQERMVEALLFASADPVSLAEMEARMPHGSDPAEALFLLRKRYEGRGVQVAKVGDNWAFRTA
ADLGFLMARDQVEQRKLSRAAIETLAIIAYHQPVTRAEIEEIRGVSVSRGTIDQLIELDWIKFGRRRMTPGRPVTYVVTQ
LFLDHFGLESARDLPGLKELRDAGLLESRPPDADDGAEPRDENTSDMFDDDADASLDDDSPLFEDDA

Specific function: May participate in chromosomal partitioning during cell division (Potential) [H]

COG id: COG1386

COG function: function code K; Predicted transcriptional regulator containing the HTH domain

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the scpB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005234
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04079 DUF387 [H]

EC number: NA

Molecular weight: Translated: 25490; Mature: 25359

Theoretical pI: Translated: 4.27; Mature: 4.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDTPKQTEESLFRAPPLAEQERMVEALLFASADPVSLAEMEARMPHGSDPAEALFLLRK
CCCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHHHHHHH
RYEGRGVQVAKVGDNWAFRTAADLGFLMARDQVEQRKLSRAAIETLAIIAYHQPVTRAEI
HHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
EEIRGVSVSRGTIDQLIELDWIKFGRRRMTPGRPVTYVVTQLFLDHFGLESARDLPGLKE
HHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHCCCCHHH
LRDAGLLESRPPDADDGAEPRDENTSDMFDDDADASLDDDSPLFEDDA
HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TDTPKQTEESLFRAPPLAEQERMVEALLFASADPVSLAEMEARMPHGSDPAEALFLLRK
CCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHHHHHHH
RYEGRGVQVAKVGDNWAFRTAADLGFLMARDQVEQRKLSRAAIETLAIIAYHQPVTRAEI
HHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
EEIRGVSVSRGTIDQLIELDWIKFGRRRMTPGRPVTYVVTQLFLDHFGLESARDLPGLKE
HHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHCCCCHHH
LRDAGLLESRPPDADDGAEPRDENTSDMFDDDADASLDDDSPLFEDDA
HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]