| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
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The map label for this gene is dapA [H]
Identifier: 89053976
GI number: 89053976
Start: 1455559
End: 1456467
Strand: Reverse
Name: dapA [H]
Synonym: Jann_1485
Alternate gene names: 89053976
Gene position: 1456467-1455559 (Counterclockwise)
Preceding gene: 89053977
Following gene: 89053975
Centisome position: 33.73
GC content: 58.42
Gene sequence:
>909_bases ATGATTGATGAGACCACCTCAGGCGTCTTTACCATCGCGGCGACGCCGTTTTTGCCCGATGGCGCATTGGATCTGGCGAG CGTCGACACGATGGTTGATTTCTACGCCGAAAACGGCGCCACGGGCCTGACGATCCTGGGCATGATGGGAGAGGCCGGGA AGCTCTCGACAGCGGAATCCGAGGCGATGATCGCCCGTGTCGTGGCGCGCACCAACCTTCCAGTGGTCTTCGGCGTAACG GCGCCTGGGTTGGCGGCAATCCAACACCTCAGTGCATCGGCCATGGATCAAGGGGCGGCAGGCGTGATGGTGGCACCCCC CTCGCAACTTCGCACAGACGATCAAATAGTGTCCTATTTTCAAAACGTTGCGGAGGCTTTGGGCGAAACACCATGGATCT TGCAGGATTTCCCGCTGGCCACACATGTCCAGATCACACCCAATGTGCTGCGCAAAATTTTTGACACTTGTCCCACTTGC AAGATGCTCAAACATGAGGATTGGCCAGGACTGGAGAAGATAAGTGCACTCCGGCAGCAAGAGGAGGACGGCGCGCGCAG GATTTCGATCCTTTGCGGCAATGGCGGGCTGTTTTTGCTGGAGGAATTGCTGCGTGGTGCGGACGGGGCGATGACGGGCT TCGCTTATCCAGAAATGATGAGGGATATCAATGCCCTCGTCCATTCTGAACCGGAGCGGGCGCGAGATATAGCCGACGCC TATCTGGCCCTGATCCGTTATGAAACCCAGCCTGGCCTGGGCCTCGCCGTTCGAAAATACATCCTCGCCAGGCGTGGCGC GATCGCCCATGGGACCGTCCGCAAACCCGGCCTGACTCTGTCGAAGCGCACAATCGCAGAAATTGAGACCCTGATTGTGC GGCAGGAGGCGCGTCTTTCCGCTTTATGA
Upstream 100 bases:
>100_bases CGGGATCTTGGCGTGCCTGTTGTCGAGCCGTGTCAAGCCGCTGTTGCCATCGCCCTCACCCGTATTCGCTTGAAACAAAG TCATAAAACGGAACCCTCCC
Downstream 100 bases:
>100_bases CGCCGCGACAGGCCGAACGCCTCTTCCGGCCTGCTGCGTTTCAGCCTAAACCACTTCGATATCGCCCTTGAGGAGCGCCC AAATGACCACGCCGCGTTTC
Product: dihydrodipicolinate synthetase
Products: NA
Alternate protein names: DHDPS [H]
Number of amino acids: Translated: 302; Mature: 302
Protein sequence:
>302_residues MIDETTSGVFTIAATPFLPDGALDLASVDTMVDFYAENGATGLTILGMMGEAGKLSTAESEAMIARVVARTNLPVVFGVT APGLAAIQHLSASAMDQGAAGVMVAPPSQLRTDDQIVSYFQNVAEALGETPWILQDFPLATHVQITPNVLRKIFDTCPTC KMLKHEDWPGLEKISALRQQEEDGARRISILCGNGGLFLLEELLRGADGAMTGFAYPEMMRDINALVHSEPERARDIADA YLALIRYETQPGLGLAVRKYILARRGAIAHGTVRKPGLTLSKRTIAEIETLIVRQEARLSAL
Sequences:
>Translated_302_residues MIDETTSGVFTIAATPFLPDGALDLASVDTMVDFYAENGATGLTILGMMGEAGKLSTAESEAMIARVVARTNLPVVFGVT APGLAAIQHLSASAMDQGAAGVMVAPPSQLRTDDQIVSYFQNVAEALGETPWILQDFPLATHVQITPNVLRKIFDTCPTC KMLKHEDWPGLEKISALRQQEEDGARRISILCGNGGLFLLEELLRGADGAMTGFAYPEMMRDINALVHSEPERARDIADA YLALIRYETQPGLGLAVRKYILARRGAIAHGTVRKPGLTLSKRTIAEIETLIVRQEARLSAL >Mature_302_residues MIDETTSGVFTIAATPFLPDGALDLASVDTMVDFYAENGATGLTILGMMGEAGKLSTAESEAMIARVVARTNLPVVFGVT APGLAAIQHLSASAMDQGAAGVMVAPPSQLRTDDQIVSYFQNVAEALGETPWILQDFPLATHVQITPNVLRKIFDTCPTC KMLKHEDWPGLEKISALRQQEEDGARRISILCGNGGLFLLEELLRGADGAMTGFAYPEMMRDINALVHSEPERARDIADA YLALIRYETQPGLGLAVRKYILARRGAIAHGTVRKPGLTLSKRTIAEIETLIVRQEARLSAL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the DHDPS family [H]
Homologues:
Organism=Escherichia coli, GI87082415, Length=287, Percent_Identity=26.1324041811847, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI1786463, Length=212, Percent_Identity=26.4150943396226, Blast_Score=65, Evalue=5e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013785 - InterPro: IPR005263 - InterPro: IPR002220 - InterPro: IPR020625 - InterPro: IPR020624 [H]
Pfam domain/function: PF00701 DHDPS [H]
EC number: =4.2.1.52 [H]
Molecular weight: Translated: 32550; Mature: 32550
Theoretical pI: Translated: 4.91; Mature: 4.91
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIDETTSGVFTIAATPFLPDGALDLASVDTMVDFYAENGATGLTILGMMGEAGKLSTAES CCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHH EAMIARVVARTNLPVVFGVTAPGLAAIQHLSASAMDQGAAGVMVAPPSQLRTDDQIVSYF HHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCEEECCHHHHCCHHHHHHHH QNVAEALGETPWILQDFPLATHVQITPNVLRKIFDTCPTCKMLKHEDWPGLEKISALRQQ HHHHHHHCCCCCEEECCCCEEEEEECHHHHHHHHHCCCCCHHHCCCCCCCHHHHHHHHHH EEDGARRISILCGNGGLFLLEELLRGADGAMTGFAYPEMMRDINALVHSEPERARDIADA HHCCCEEEEEEECCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHH YLALIRYETQPGLGLAVRKYILARRGAIAHGTVRKPGLTLSKRTIAEIETLIVRQEARLS HHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC AL CC >Mature Secondary Structure MIDETTSGVFTIAATPFLPDGALDLASVDTMVDFYAENGATGLTILGMMGEAGKLSTAES CCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHH EAMIARVVARTNLPVVFGVTAPGLAAIQHLSASAMDQGAAGVMVAPPSQLRTDDQIVSYF HHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCEEECCHHHHCCHHHHHHHH QNVAEALGETPWILQDFPLATHVQITPNVLRKIFDTCPTCKMLKHEDWPGLEKISALRQQ HHHHHHHCCCCCEEECCCCEEEEEECHHHHHHHHHCCCCCHHHCCCCCCCHHHHHHHHHH EEDGARRISILCGNGGLFLLEELLRGADGAMTGFAYPEMMRDINALVHSEPERARDIADA HHCCCEEEEEEECCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHH YLALIRYETQPGLGLAVRKYILARRGAIAHGTVRKPGLTLSKRTIAEIETLIVRQEARLS HHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC AL CC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA