Click here to switch to the map view.

The map label for this gene is arnC [H]

Identifier: 89053975

GI number: 89053975

Start: 1454724

End: 1455476

Strand: Reverse

Name: arnC [H]

Synonym: Jann_1484

Alternate gene names: 89053975

Gene position: 1455476-1454724 (Counterclockwise)

Preceding gene: 89053976

Following gene: 89053974

Centisome position: 33.71

GC content: 63.61

Gene sequence:

>753_bases
ATGACCACGCCGCGTTTCGCGATCGCGATCCCCATGTTAAATGAGGCCGAGACCGTGCCCCATCTGCTTGGCGGGTGCGT
GGCAGCGGCTGAGCCTTTCGGCACGTTTGAGATTTGCGTGACCGACGACGGATCGACAGACGGCACGGGCGCGGCATTGC
GCGCATTCGGCGCAGCCCATCCGCAAGCAAACTTAACGGTGTTAACGCATCCGCGGCCGGCCGGCCAATCCGCGGCCGTC
CACGCCGCCGTGCGCGCCGCCCGCGCACCCATCATCGCAACCTTGGATGGGGATGGTCAAAATCCACCCGAGGAGTTGCC
CAAACTCCTGACGGCGCTGCTTGACGGGCCCGAGACCCTTGGCCTTGTGGCCGGTCAGCGCGTGAAACGAGATGATCCCC
TGCCCAAGCGCGTCGCGTCGCGCGCAGCGAATGCCATCCGTGGTGTGCTGTTGAAAGACGGCACACGCGACACGGGCTGC
GGACTGAAGGCCTATCGCCGCGACGCCTATCTCGCCCTACCCTATTTTGACCACATGCACCGCTACTTACCTGCGCTTTT
TCAACGGGATGGCTGGGATATCGCCCATGTCGACGTTGCCCATAAACCGCGCGTTGCGGGCGCATCGAAGTACACAAATC
TGGGCCGTGCGATTGTCGGATTGTCTGACCTCATGGGGGTCGCCTGGTTGATCCGGCGGCGTCGCAAGGTCCTGCCAAAG
GACACCGACGTCTCCCGACCGGAGGAGCGTTAA

Upstream 100 bases:

>100_bases
CGTCTTTCCGCTTTATGACGCCGCGACAGGCCGAACGCCTCTTCCGGCCTGCTGCGTTTCAGCCTAAACCACTTCGATAT
CGCCCTTGAGGAGCGCCCAA

Downstream 100 bases:

>100_bases
TCATGGAAGACTGGATCTTCGGGGTCTTCAACCTCGACAGTTGGTTTGAGTTCTGGTGGGTCGCTCTCGGCTTCCTGGCT
CAGGGCATTTTCGCCTCCCG

Product: glycosyl transferase family protein

Products: NA

Alternate protein names: Undecaprenyl-phosphate Ara4FN transferase; Ara4FN transferase [H]

Number of amino acids: Translated: 250; Mature: 249

Protein sequence:

>250_residues
MTTPRFAIAIPMLNEAETVPHLLGGCVAAAEPFGTFEICVTDDGSTDGTGAALRAFGAAHPQANLTVLTHPRPAGQSAAV
HAAVRAARAPIIATLDGDGQNPPEELPKLLTALLDGPETLGLVAGQRVKRDDPLPKRVASRAANAIRGVLLKDGTRDTGC
GLKAYRRDAYLALPYFDHMHRYLPALFQRDGWDIAHVDVAHKPRVAGASKYTNLGRAIVGLSDLMGVAWLIRRRRKVLPK
DTDVSRPEER

Sequences:

>Translated_250_residues
MTTPRFAIAIPMLNEAETVPHLLGGCVAAAEPFGTFEICVTDDGSTDGTGAALRAFGAAHPQANLTVLTHPRPAGQSAAV
HAAVRAARAPIIATLDGDGQNPPEELPKLLTALLDGPETLGLVAGQRVKRDDPLPKRVASRAANAIRGVLLKDGTRDTGC
GLKAYRRDAYLALPYFDHMHRYLPALFQRDGWDIAHVDVAHKPRVAGASKYTNLGRAIVGLSDLMGVAWLIRRRRKVLPK
DTDVSRPEER
>Mature_249_residues
TTPRFAIAIPMLNEAETVPHLLGGCVAAAEPFGTFEICVTDDGSTDGTGAALRAFGAAHPQANLTVLTHPRPAGQSAAVH
AAVRAARAPIIATLDGDGQNPPEELPKLLTALLDGPETLGLVAGQRVKRDDPLPKRVASRAANAIRGVLLKDGTRDTGCG
LKAYRRDAYLALPYFDHMHRYLPALFQRDGWDIAHVDVAHKPRVAGASKYTNLGRAIVGLSDLMGVAWLIRRRRKVLPKD
TDVSRPEER

Specific function: Catalyzes the transfer of 4-deoxy-4-formamido-L- arabinose from UDP to undecaprenyl phosphate. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides [H]

COG id: COG0463

COG function: function code M; Glycosyltransferases involved in cell wall biogenesis

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family [H]

Homologues:

Organism=Escherichia coli, GI1788588, Length=225, Percent_Identity=32, Blast_Score=101, Evalue=4e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022857
- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: =2.7.8.30 [H]

Molecular weight: Translated: 26841; Mature: 26710

Theoretical pI: Translated: 9.48; Mature: 9.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTPRFAIAIPMLNEAETVPHLLGGCVAAAEPFGTFEICVTDDGSTDGTGAALRAFGAAH
CCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHCCC
PQANLTVLTHPRPAGQSAAVHAAVRAARAPIIATLDGDGQNPPEELPKLLTALLDGPETL
CCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHCCCHHH
GLVAGQRVKRDDPLPKRVASRAANAIRGVLLKDGTRDTGCGLKAYRRDAYLALPYFDHMH
HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHEECCCCCCCCCHHHHCCCCEEECHHHHHHH
RYLPALFQRDGWDIAHVDVAHKPRVAGASKYTNLGRAIVGLSDLMGVAWLIRRRRKVLPK
HHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
DTDVSRPEER
CCCCCCCCCC
>Mature Secondary Structure 
TTPRFAIAIPMLNEAETVPHLLGGCVAAAEPFGTFEICVTDDGSTDGTGAALRAFGAAH
CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHCCC
PQANLTVLTHPRPAGQSAAVHAAVRAARAPIIATLDGDGQNPPEELPKLLTALLDGPETL
CCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHCCCHHH
GLVAGQRVKRDDPLPKRVASRAANAIRGVLLKDGTRDTGCGLKAYRRDAYLALPYFDHMH
HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHEECCCCCCCCCHHHHCCCCEEECHHHHHHH
RYLPALFQRDGWDIAHVDVAHKPRVAGASKYTNLGRAIVGLSDLMGVAWLIRRRRKVLPK
HHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
DTDVSRPEER
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA