| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
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The map label for this gene is hisM [H]
Identifier: 89053620
GI number: 89053620
Start: 1090937
End: 1091776
Strand: Reverse
Name: hisM [H]
Synonym: Jann_1129
Alternate gene names: 89053620
Gene position: 1091776-1090937 (Counterclockwise)
Preceding gene: 89053621
Following gene: 89053619
Centisome position: 25.28
GC content: 63.81
Gene sequence:
>840_bases ATGAGTTGCGCGCAGACGATCCAAGACTACGCCCTCCGCTCCCTCGGCATCGGCGAACGCGCTCTGCCCCAGGGCGACGT GACGCTGTGCGAACAGGTCGTCCTCATCGGCTCGGGCATGATCTGGAACGTCTATTTCGGCGTCCTGGCCCTGTCGTTCG GCTTCTTCTTCGCCGTCGCCCTCGCTGTCGCCAAAGCCTCCCCCCGTTTCATGCTCCGCAAACCGGCGGAGTGGTTCATC TTCCTGTTCCGGGGCTCGCCCCTCTTCATCCAGTTCTTCATGGCCTATGAGGCTTTCGTGATGCTGCCCCGCCTGGGCTA TGAGTTCGAGCTCTTCGGCATCGCCATCGAGGCCGAGACCCGCTGGTTCGCCCGCGCCTGGCTCGGGGCCCTCATCGTCC TGTTCTGCAACACCTCCGCCTATGCGGCCGAGATCTTCTACGGCGCACTCCGCTCGGTCCCCAAAGGCGATCTGGAGGCC GCCGACGCCTATGGCCTGACCGGCTGGACCAAGTTCAGGCGCATCACCTTCCCCACCACGATGCGCCTCGCATGGCCCGC CTACACCAACGAGGCGATCTTCATGTTCCACGCCACCGCACTGGTGTTCTTCAGCTCCTTTCCCGCCTTCCAGCAGCGCG GCGATGCGCTCTACTACGCCTCCTACTTCGCCGACCGCACGTTCAACCCGTTCATCCCCTATCCCATCGTGGGGGCTTAT TTCATTGCCCTCACCCTTCTGGTGATCGCGCTTTTTGGGGCGATCAACCGCCGCCTGAACCGCCACTTGCCGTCGGACCG GCGGGCAAAGCTGCGCATTCGACCGACGCTGATCCGGTAG
Upstream 100 bases:
>100_bases CTTTTGCAAAAGCCTTGCCAGAGCCTTGCAAGGCTCTGGTCACGCCCTTGCAAGGGCGTGGGAAAACCCTTGCAAGGGTT TTGCGCCAAGGCCTTCGCCC
Downstream 100 bases:
>100_bases AGGACCTCCGGTAAGCGGAGTTTCGCGAGTTTCAACAATCCAGTCAGGTTTTCCGTAGCACCCCTCAGCCGTCGCGCGCG GTAGGGTCACACCACCCCTG
Product: binding-protein-dependent transport systems inner membrane component
Products: ADP; phosphate; L-histidine [Cytoplasm]; ADP; L-ornithine [Cytoplasm]; L-arginine [Cytoplasm]; L-lysine [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 279; Mature: 278
Protein sequence:
>279_residues MSCAQTIQDYALRSLGIGERALPQGDVTLCEQVVLIGSGMIWNVYFGVLALSFGFFFAVALAVAKASPRFMLRKPAEWFI FLFRGSPLFIQFFMAYEAFVMLPRLGYEFELFGIAIEAETRWFARAWLGALIVLFCNTSAYAAEIFYGALRSVPKGDLEA ADAYGLTGWTKFRRITFPTTMRLAWPAYTNEAIFMFHATALVFFSSFPAFQQRGDALYYASYFADRTFNPFIPYPIVGAY FIALTLLVIALFGAINRRLNRHLPSDRRAKLRIRPTLIR
Sequences:
>Translated_279_residues MSCAQTIQDYALRSLGIGERALPQGDVTLCEQVVLIGSGMIWNVYFGVLALSFGFFFAVALAVAKASPRFMLRKPAEWFI FLFRGSPLFIQFFMAYEAFVMLPRLGYEFELFGIAIEAETRWFARAWLGALIVLFCNTSAYAAEIFYGALRSVPKGDLEA ADAYGLTGWTKFRRITFPTTMRLAWPAYTNEAIFMFHATALVFFSSFPAFQQRGDALYYASYFADRTFNPFIPYPIVGAY FIALTLLVIALFGAINRRLNRHLPSDRRAKLRIRPTLIR >Mature_278_residues SCAQTIQDYALRSLGIGERALPQGDVTLCEQVVLIGSGMIWNVYFGVLALSFGFFFAVALAVAKASPRFMLRKPAEWFIF LFRGSPLFIQFFMAYEAFVMLPRLGYEFELFGIAIEAETRWFARAWLGALIVLFCNTSAYAAEIFYGALRSVPKGDLEAA DAYGLTGWTKFRRITFPTTMRLAWPAYTNEAIFMFHATALVFFSSFPAFQQRGDALYYASYFADRTFNPFIPYPIVGAYF IALTLLVIALFGAINRRLNRHLPSDRRAKLRIRPTLIR
Specific function: Part of the binding-protein-dependent transport system for histidine; probably responsible for the translocation of the substrate across the membrane [H]
COG id: COG4160
COG function: function code E; ABC-type arginine/histidine transport system, permease component
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transmembrane type-1 domain [H]
Homologues:
Organism=Escherichia coli, GI1788645, Length=234, Percent_Identity=32.4786324786325, Blast_Score=118, Evalue=4e-28, Organism=Escherichia coli, GI1788226, Length=229, Percent_Identity=29.6943231441048, Blast_Score=84, Evalue=8e-18, Organism=Escherichia coli, GI1787086, Length=177, Percent_Identity=26.5536723163842, Blast_Score=71, Evalue=7e-14, Organism=Escherichia coli, GI87082239, Length=160, Percent_Identity=31.25, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI1787087, Length=229, Percent_Identity=26.6375545851528, Blast_Score=63, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010065 - InterPro: IPR000515 [H]
Pfam domain/function: PF00528 BPD_transp_1 [H]
EC number: NA
Molecular weight: Translated: 31701; Mature: 31569
Theoretical pI: Translated: 9.84; Mature: 9.84
Prosite motif: PS50928 ABC_TM1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSCAQTIQDYALRSLGIGERALPQGDVTLCEQVVLIGSGMIWNVYFGVLALSFGFFFAVA CCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH LAVAKASPRFMLRKPAEWFIFLFRGSPLFIQFFMAYEAFVMLPRLGYEFELFGIAIEAET HHHHCCCCCCEEECCHHHEEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCH RWFARAWLGALIVLFCNTSAYAAEIFYGALRSVPKGDLEAADAYGLTGWTKFRRITFPTT HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHCCCCCCCHHHHEEEECCCE MRLAWPAYTNEAIFMFHATALVFFSSFPAFQQRGDALYYASYFADRTFNPFIPYPIVGAY EEEECCCCCCCEEEEHHHHHHHHHHCCHHHHHCCCEEEEEHHHHCCCCCCCCCHHHHHHH FIALTLLVIALFGAINRRLNRHLPSDRRAKLRIRPTLIR HHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCC >Mature Secondary Structure SCAQTIQDYALRSLGIGERALPQGDVTLCEQVVLIGSGMIWNVYFGVLALSFGFFFAVA CHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH LAVAKASPRFMLRKPAEWFIFLFRGSPLFIQFFMAYEAFVMLPRLGYEFELFGIAIEAET HHHHCCCCCCEEECCHHHEEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCH RWFARAWLGALIVLFCNTSAYAAEIFYGALRSVPKGDLEAADAYGLTGWTKFRRITFPTT HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHCCCCCCCHHHHEEEECCCE MRLAWPAYTNEAIFMFHATALVFFSSFPAFQQRGDALYYASYFADRTFNPFIPYPIVGAY EEEECCCCCCCEEEEHHHHHHHHHHCCHHHHHCCCEEEEEHHHHCCCCCCCCCHHHHHHH FIALTLLVIALFGAINRRLNRHLPSDRRAKLRIRPTLIR HHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; L-histidine [Periplasm]; H2O; ATP; L-ornithine [Periplasm]; L-arginine [Periplasm]; L-lysine [Periplasm] [C]
Specific reaction: ATP + L-histidine [Periplasm] + H2O = ADP + phosphate + L-histidine [Cytoplasm] ATP + L-ornithine [Periplasm] + H2O = ADP + phosphate + L-ornithine [Cytoplasm] ATP + L-arginine [Periplasm] + H2O = ADP + phosphate + L-arginine [Cytoplasm] ATP + L-lysine [P
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]