| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
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The map label for this gene is 89053619
Identifier: 89053619
GI number: 89053619
Start: 1089406
End: 1090773
Strand: Reverse
Name: 89053619
Synonym: Jann_1128
Alternate gene names: NA
Gene position: 1090773-1089406 (Counterclockwise)
Preceding gene: 89053620
Following gene: 89053618
Centisome position: 25.26
GC content: 64.99
Gene sequence:
>1368_bases ATGACACCACTCGCCCAAGCCGCTTTTGCGGCCACTCTCGCCCTGTCCGCCACCCTGCTCCACACCCAGGCCCAGGCCGC GCCAGTCTCAACGGTGCCAGGCCCGAACGCACCGCAATACATTGATGTTCGGTTCAACTTCTTCAACCTCGCCAATGGGT TCAACGCCGTGGAAGGCGTGGTGCGCGGTCTGTCGCTATCGGGCACAAGCGCGGCCTATTCCGTTGAAATCACGGCAAAT TCCGCAGGCTTCGGGATCGGGGAATATGTTGGCAACCCGCTGGCCAATTCCTGGACCGTCTTGAACGGAGAGATCACCCA GTTCGAGTTCTACTCCGCCGGTGCGTTCAACACGGCCCCCACCGTCACCACCGCCACCTTTGGCCTGAGCAACACGCCGG GCTCCCCCATTGAAGGAGAGATCGGCCTCGGCGCGTCCTGGGCTGACGCAGAAACGGAAGATCTCGACGGCTCCGGCCTC TATTTCACCGCCCTGCGCCGCTACGACAGGCTGCCCGTCCCCCGGACGCGGACGCAGCTGGCCGGGGCCATATCCCGGGC AAACCTGTCCGAAACCGCCGCCGTTGCGCCCGTGCCATTGCCTGCGGGGATCTGGCTGTTGCTGGCGAGCCTTGCGGGCA TGACCGGCCTGCGCCGCCTGTCCGCGCGGCCCAAACGGAGCACTCCCATGGCAACGATGGCCGGGTCGCTGGCGCTGTGT CTCGGTGCTGCGTCCGCCGCCCAGGCAACACCCGTTGGGGTCTTCACTGGGACGCCACCGGCGAATTACTACGATTATTC CTTTCGCTTCGTCGACGCCGTCACCAACGACATCTCAGCCGGTATCATCCGTGGCCTCAGCGCCAATGGCACAAGTGCTG CCTACAGCGTAGAGGTGACGGCCAGCCAGGGCGTGTTCGGCATGGGCGAATATGTGGGCACGCCCATCCCGAACCTCTGG ACCGTACAGAACGGCGTGATCCAATCGGTGGAGTTTTTCAGCTATGGCGCTGCCAACACCGCGCCCGCTGTCACGACGTC CACCCTGATCTTCAGTTCAAATGCCAGCATGGCGGAGGCCTATAGCGGGGCCCATGCCAACCATCCCATCGCGGCTGGCT TCCCCGAAAATGCTGAAACCGGCCTGACATTCGAGGTCTTGAGCAGTTACCACAGCCTGCCGTTGACTGCCTGGGGCGGG GCGGCTCCCCGTGTGCCGGATGCAAACCCGTTTCCCACGCGCGGCACAGCCCGCAGCATGGCCGCTGTCTCGGAGGTATC CGTTGCCCCCGTGCCCTTGCCCGCTGGCGTCTGGCTCCTCTTGGTGAGCCTCGGCGGTCTGGCGGGCCTGCGCCGTCTGC GCGCCTGA
Upstream 100 bases:
>100_bases CTCAGCCGTCGCGCGCGGTAGGGTCACACCACCCCTGACCTCGCGCTGTTTTCACTCAACGGCTTTCTTTGACCGGACCG CTTTTGATCGGAGACGTTCC
Downstream 100 bases:
>100_bases CATGACACCAACGCGGCAGGCGGGCGGCAAACCCCGCTTGCCGTACATGGCCCGCAGGCGTAAGCAAAACCGCATCCCAA CGCCCGTGTGCCCCATGTCC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 455; Mature: 454
Protein sequence:
>455_residues MTPLAQAAFAATLALSATLLHTQAQAAPVSTVPGPNAPQYIDVRFNFFNLANGFNAVEGVVRGLSLSGTSAAYSVEITAN SAGFGIGEYVGNPLANSWTVLNGEITQFEFYSAGAFNTAPTVTTATFGLSNTPGSPIEGEIGLGASWADAETEDLDGSGL YFTALRRYDRLPVPRTRTQLAGAISRANLSETAAVAPVPLPAGIWLLLASLAGMTGLRRLSARPKRSTPMATMAGSLALC LGAASAAQATPVGVFTGTPPANYYDYSFRFVDAVTNDISAGIIRGLSANGTSAAYSVEVTASQGVFGMGEYVGTPIPNLW TVQNGVIQSVEFFSYGAANTAPAVTTSTLIFSSNASMAEAYSGAHANHPIAAGFPENAETGLTFEVLSSYHSLPLTAWGG AAPRVPDANPFPTRGTARSMAAVSEVSVAPVPLPAGVWLLLVSLGGLAGLRRLRA
Sequences:
>Translated_455_residues MTPLAQAAFAATLALSATLLHTQAQAAPVSTVPGPNAPQYIDVRFNFFNLANGFNAVEGVVRGLSLSGTSAAYSVEITAN SAGFGIGEYVGNPLANSWTVLNGEITQFEFYSAGAFNTAPTVTTATFGLSNTPGSPIEGEIGLGASWADAETEDLDGSGL YFTALRRYDRLPVPRTRTQLAGAISRANLSETAAVAPVPLPAGIWLLLASLAGMTGLRRLSARPKRSTPMATMAGSLALC LGAASAAQATPVGVFTGTPPANYYDYSFRFVDAVTNDISAGIIRGLSANGTSAAYSVEVTASQGVFGMGEYVGTPIPNLW TVQNGVIQSVEFFSYGAANTAPAVTTSTLIFSSNASMAEAYSGAHANHPIAAGFPENAETGLTFEVLSSYHSLPLTAWGG AAPRVPDANPFPTRGTARSMAAVSEVSVAPVPLPAGVWLLLVSLGGLAGLRRLRA >Mature_454_residues TPLAQAAFAATLALSATLLHTQAQAAPVSTVPGPNAPQYIDVRFNFFNLANGFNAVEGVVRGLSLSGTSAAYSVEITANS AGFGIGEYVGNPLANSWTVLNGEITQFEFYSAGAFNTAPTVTTATFGLSNTPGSPIEGEIGLGASWADAETEDLDGSGLY FTALRRYDRLPVPRTRTQLAGAISRANLSETAAVAPVPLPAGIWLLLASLAGMTGLRRLSARPKRSTPMATMAGSLALCL GAASAAQATPVGVFTGTPPANYYDYSFRFVDAVTNDISAGIIRGLSANGTSAAYSVEVTASQGVFGMGEYVGTPIPNLWT VQNGVIQSVEFFSYGAANTAPAVTTSTLIFSSNASMAEAYSGAHANHPIAAGFPENAETGLTFEVLSSYHSLPLTAWGGA APRVPDANPFPTRGTARSMAAVSEVSVAPVPLPAGVWLLLVSLGGLAGLRRLRA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 46781; Mature: 46650
Theoretical pI: Translated: 5.11; Mature: 5.11
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPLAQAAFAATLALSATLLHTQAQAAPVSTVPGPNAPQYIDVRFNFFNLANGFNAVEGV CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEECCCCHHHHHHH VRGLSLSGTSAAYSVEITANSAGFGIGEYVGNPLANSWTVLNGEITQFEFYSAGAFNTAP HHCCCCCCCCEEEEEEEEECCCCCCHHHHHCCCCCCCEEEECCCEEEEEEEECCCCCCCC TVTTATFGLSNTPGSPIEGEIGLGASWADAETEDLDGSGLYFTALRRYDRLPVPRTRTQL CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHH AGAISRANLSETAAVAPVPLPAGIWLLLASLAGMTGLRRLSARPKRSTPMATMAGSLALC HHHHHHCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH LGAASAAQATPVGVFTGTPPANYYDYSFRFVDAVTNDISAGIIRGLSANGTSAAYSVEVT HHCCCCCCCCCEEEEECCCCCCCCCEEEEEEEHHHHHHHHHHHHCCCCCCCCEEEEEEEE ASQGVFGMGEYVGTPIPNLWTVQNGVIQSVEFFSYGAANTAPAVTTSTLIFSSNASMAEA CCCCCCCCHHHHCCCCCCEEECCCHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCHHHH YSGAHANHPIAAGFPENAETGLTFEVLSSYHSLPLTAWGGAAPRVPDANPFPTRGTARSM HCCCCCCCCEECCCCCCCCCCCHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCHHHH AAVSEVSVAPVPLPAGVWLLLVSLGGLAGLRRLRA HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure TPLAQAAFAATLALSATLLHTQAQAAPVSTVPGPNAPQYIDVRFNFFNLANGFNAVEGV CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEECCCCHHHHHHH VRGLSLSGTSAAYSVEITANSAGFGIGEYVGNPLANSWTVLNGEITQFEFYSAGAFNTAP HHCCCCCCCCEEEEEEEEECCCCCCHHHHHCCCCCCCEEEECCCEEEEEEEECCCCCCCC TVTTATFGLSNTPGSPIEGEIGLGASWADAETEDLDGSGLYFTALRRYDRLPVPRTRTQL CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHH AGAISRANLSETAAVAPVPLPAGIWLLLASLAGMTGLRRLSARPKRSTPMATMAGSLALC HHHHHHCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH LGAASAAQATPVGVFTGTPPANYYDYSFRFVDAVTNDISAGIIRGLSANGTSAAYSVEVT HHCCCCCCCCCEEEEECCCCCCCCCEEEEEEEHHHHHHHHHHHHCCCCCCCCEEEEEEEE ASQGVFGMGEYVGTPIPNLWTVQNGVIQSVEFFSYGAANTAPAVTTSTLIFSSNASMAEA CCCCCCCCHHHHCCCCCCEEECCCHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCHHHH YSGAHANHPIAAGFPENAETGLTFEVLSSYHSLPLTAWGGAAPRVPDANPFPTRGTARSM HCCCCCCCCEECCCCCCCCCCCHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCHHHH AAVSEVSVAPVPLPAGVWLLLVSLGGLAGLRRLRA HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA