Click here to switch to the map view.

The map label for this gene is ychK [C]

Identifier: 89053413

GI number: 89053413

Start: 878465

End: 880258

Strand: Reverse

Name: ychK [C]

Synonym: Jann_0922

Alternate gene names: 89053413

Gene position: 880258-878465 (Counterclockwise)

Preceding gene: 89053414

Following gene: 89053411

Centisome position: 20.39

GC content: 64.16

Gene sequence:

>1794_bases
ATGCAAAGCGATTTTGCGCCCGAAGGCCTGTTCAAAATTCTGCAAGGCCCCGCATTCGCGCGGCTGTCCCAGACGCCCGT
GGAACGGGGCCACAAGATGATCACCGCAGGCTCAGACGCCGAGGCGATGTATCTGGTCTTCTCGGGCCGCTTCCGGGTGG
AGCGGGACGGCGTGGATCTGGCCGAAATCGGCGCAGGCTCGGTGATCGGAGAGATCGCCTTTCTAACAGGCTCCCCCCGC
ACGGCAGACGTCGTCGCCGCCCGTGACAGCATCGTCTACCGCATTGATCGGCCCGCCTACGATGCGCTCTGCGCCGAGGT
TGACGGCCTGCCGCAAGCCATGGCCGCAGAACTGGCCGACCGTCTGGCCAAAACATCCGCCCGCGTCACGCCTGATCCGG
GCCGCCCGCCAGCGCGCACCTTCTGCATCCTGCCCGCTGCGGGTGCTCCCCTGCCCGAGCGGTTCGTGCCCGACCTTACC
CGCGCGATAGAGGCGCATCATTCCGTCGCTCTCGTGACCGAGGCCGCCTTCCGGGAGGCTCTGGGGGAGCGTGCCGATCC
CACCACCTCAGACGCCATCGCCTGGCTCAACACCCAGGAACAAAACGCGCAAATCGTTCTATTCGTCGCCAATCCCGACG
CCAGCGACTGGTCCCGGGCCGCGCTGAAACAAGCCGATCAGGCCGTGATCGTGGCCCAAGCCGTGAACTATCAGGACCCG
TCCGAGCTGGAGGCCTTCGCCCTGCAAATCCTGCCGGAGCAGCAACGTCGCCTTGTCCTGTTGCACCCCCATCGGATGCA
AAAGGCGCCAGGCACCGGGCGATGGCTCGATACCCGGCCGGTGTTCCTGCACCATCACGTGGCGCTGACGGGCGGTGATG
GCGACATCGCGCGTTTGGGCCGGTTCCTGTCGGGCCGCGCCGTGGGACTTGTGCTGTCCGGTGGCGGTGCCTTCGGCGTG
GCCCATGTGGGCGTCTACCGTGCGATGAATGAGATGGGGCTACCCGTCGATATCGTCGGCGGCACCTCCGTGGGCTCTGC
CATGGGCGGCGCGATTGCGTTGGGTGTTCCGGCTGAGGAAATCGGCCCCAGGGTGGAGCAGATCTTCGTCCGTTCCGGCG
CGATGCGCAAAATCACCGTGCCACGGTTTGCCTTCCTCGATCACAAAGTGCTTGATGGCGCATTGATGGAGCATTTCGGC
GAAGAGCCGATCGAAGATCTGTGGATCCCCTACTATGCCGTCGCAGCAGACCTGTCCGCGATGGACAAAACCGTGATCCG
GCGTGGTCCGTTGTGGGAAGCGATCCGCGCCTCGTCTGCCATTCCCGGCGTCCTGCCTCCCTTCTTTGCGCGCGATGGGC
GGATGCTTGTGGATGGGGGCTGTATCGACAACATGCCGTTCCGCACGATGCATGGGCTGAAAACCGGCCCCAACGTCGTG
GTCAATGTCCAAAAGGCCACCAACAAGATCGTTCATGTGGATTACGCGAGCCTGCCCGGTCGCGGAGAGCTGTTGCGCCA
GACGATCAACCCCTTCGCCAAGACGCCGCCGCGCGTTCCGGGTGTCATTTCGACGGTGATGCGCTCACTTTTGGTGGGCC
AGTCCGAGATGCTTGCCGATCTCGCTCCCCACGATCTGATGATCCGGCCCCCCGGCCTGAAAGGCGCGGGCTTTCTCGCC
TGGAACCAGCACAAGCTGTTCTACGAGATGGCCTACAAACATGCGCTTGGGGTCTTTGCGGAGAAGGGCAACGACAGCGA
TACCGCCATGGCTGCCCTTCGCTCAATAGTGTAG

Upstream 100 bases:

>100_bases
CGTTTCGCTTTCCTGTAATCCGGTGGTAAGTCACGTTAATCAACTCGCCCGCACGATGTGCGCGGGTCCAGACCAGACGT
GAAGACCGGAAAGATCCCTG

Downstream 100 bases:

>100_bases
CAGATTATCGCCTGGTCATCAGTTTATTGAATTTCAGGAGCTTCGGCCGGTGCGCCGTCATCGGGGTCGTCCGCAGGCTC
GGTCGTTGCTTCAACTTCAA

Product: cyclic nucleotide-binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 597; Mature: 597

Protein sequence:

>597_residues
MQSDFAPEGLFKILQGPAFARLSQTPVERGHKMITAGSDAEAMYLVFSGRFRVERDGVDLAEIGAGSVIGEIAFLTGSPR
TADVVAARDSIVYRIDRPAYDALCAEVDGLPQAMAAELADRLAKTSARVTPDPGRPPARTFCILPAAGAPLPERFVPDLT
RAIEAHHSVALVTEAAFREALGERADPTTSDAIAWLNTQEQNAQIVLFVANPDASDWSRAALKQADQAVIVAQAVNYQDP
SELEAFALQILPEQQRRLVLLHPHRMQKAPGTGRWLDTRPVFLHHHVALTGGDGDIARLGRFLSGRAVGLVLSGGGAFGV
AHVGVYRAMNEMGLPVDIVGGTSVGSAMGGAIALGVPAEEIGPRVEQIFVRSGAMRKITVPRFAFLDHKVLDGALMEHFG
EEPIEDLWIPYYAVAADLSAMDKTVIRRGPLWEAIRASSAIPGVLPPFFARDGRMLVDGGCIDNMPFRTMHGLKTGPNVV
VNVQKATNKIVHVDYASLPGRGELLRQTINPFAKTPPRVPGVISTVMRSLLVGQSEMLADLAPHDLMIRPPGLKGAGFLA
WNQHKLFYEMAYKHALGVFAEKGNDSDTAMAALRSIV

Sequences:

>Translated_597_residues
MQSDFAPEGLFKILQGPAFARLSQTPVERGHKMITAGSDAEAMYLVFSGRFRVERDGVDLAEIGAGSVIGEIAFLTGSPR
TADVVAARDSIVYRIDRPAYDALCAEVDGLPQAMAAELADRLAKTSARVTPDPGRPPARTFCILPAAGAPLPERFVPDLT
RAIEAHHSVALVTEAAFREALGERADPTTSDAIAWLNTQEQNAQIVLFVANPDASDWSRAALKQADQAVIVAQAVNYQDP
SELEAFALQILPEQQRRLVLLHPHRMQKAPGTGRWLDTRPVFLHHHVALTGGDGDIARLGRFLSGRAVGLVLSGGGAFGV
AHVGVYRAMNEMGLPVDIVGGTSVGSAMGGAIALGVPAEEIGPRVEQIFVRSGAMRKITVPRFAFLDHKVLDGALMEHFG
EEPIEDLWIPYYAVAADLSAMDKTVIRRGPLWEAIRASSAIPGVLPPFFARDGRMLVDGGCIDNMPFRTMHGLKTGPNVV
VNVQKATNKIVHVDYASLPGRGELLRQTINPFAKTPPRVPGVISTVMRSLLVGQSEMLADLAPHDLMIRPPGLKGAGFLA
WNQHKLFYEMAYKHALGVFAEKGNDSDTAMAALRSIV
>Mature_597_residues
MQSDFAPEGLFKILQGPAFARLSQTPVERGHKMITAGSDAEAMYLVFSGRFRVERDGVDLAEIGAGSVIGEIAFLTGSPR
TADVVAARDSIVYRIDRPAYDALCAEVDGLPQAMAAELADRLAKTSARVTPDPGRPPARTFCILPAAGAPLPERFVPDLT
RAIEAHHSVALVTEAAFREALGERADPTTSDAIAWLNTQEQNAQIVLFVANPDASDWSRAALKQADQAVIVAQAVNYQDP
SELEAFALQILPEQQRRLVLLHPHRMQKAPGTGRWLDTRPVFLHHHVALTGGDGDIARLGRFLSGRAVGLVLSGGGAFGV
AHVGVYRAMNEMGLPVDIVGGTSVGSAMGGAIALGVPAEEIGPRVEQIFVRSGAMRKITVPRFAFLDHKVLDGALMEHFG
EEPIEDLWIPYYAVAADLSAMDKTVIRRGPLWEAIRASSAIPGVLPPFFARDGRMLVDGGCIDNMPFRTMHGLKTGPNVV
VNVQKATNKIVHVDYASLPGRGELLRQTINPFAKTPPRVPGVISTVMRSLLVGQSEMLADLAPHDLMIRPPGLKGAGFLA
WNQHKLFYEMAYKHALGVFAEKGNDSDTAMAALRSIV

Specific function: Unknown

COG id: COG1752

COG function: function code R; Predicted esterase of the alpha-beta hydrolase superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 patatin domain [H]

Homologues:

Organism=Homo sapiens, GI260656039, Length=649, Percent_Identity=28.0431432973806, Blast_Score=182, Evalue=9e-46,
Organism=Homo sapiens, GI260656043, Length=649, Percent_Identity=28.0431432973806, Blast_Score=181, Evalue=1e-45,
Organism=Homo sapiens, GI260656041, Length=650, Percent_Identity=28, Blast_Score=181, Evalue=2e-45,
Organism=Homo sapiens, GI116256487, Length=650, Percent_Identity=28, Blast_Score=181, Evalue=2e-45,
Organism=Homo sapiens, GI260656037, Length=650, Percent_Identity=28, Blast_Score=180, Evalue=3e-45,
Organism=Homo sapiens, GI148727290, Length=616, Percent_Identity=26.7857142857143, Blast_Score=176, Evalue=4e-44,
Organism=Homo sapiens, GI148727335, Length=616, Percent_Identity=26.9480519480519, Blast_Score=176, Evalue=5e-44,
Organism=Escherichia coli, GI226510936, Length=181, Percent_Identity=30.3867403314917, Blast_Score=73, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI71997289, Length=582, Percent_Identity=29.2096219931272, Blast_Score=169, Evalue=4e-42,
Organism=Caenorhabditis elegans, GI71997299, Length=582, Percent_Identity=29.2096219931272, Blast_Score=169, Evalue=4e-42,
Organism=Caenorhabditis elegans, GI193204778, Length=508, Percent_Identity=26.7716535433071, Blast_Score=141, Evalue=9e-34,
Organism=Saccharomyces cerevisiae, GI6323581, Length=264, Percent_Identity=32.9545454545455, Blast_Score=139, Evalue=1e-33,
Organism=Drosophila melanogaster, GI281376913, Length=578, Percent_Identity=27.3356401384083, Blast_Score=188, Evalue=1e-47,
Organism=Drosophila melanogaster, GI28571388, Length=578, Percent_Identity=26.643598615917, Blast_Score=187, Evalue=1e-47,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016035
- InterPro:   IPR018490
- InterPro:   IPR000595
- InterPro:   IPR001423
- InterPro:   IPR002641
- InterPro:   IPR014710 [H]

Pfam domain/function: PF00027 cNMP_binding; PF01734 Patatin [H]

EC number: NA

Molecular weight: Translated: 64247; Mature: 64247

Theoretical pI: Translated: 6.73; Mature: 6.73

Prosite motif: PS50042 CNMP_BINDING_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQSDFAPEGLFKILQGPAFARLSQTPVERGHKMITAGSDAEAMYLVFSGRFRVERDGVDL
CCCCCCHHHHHHHHCCCHHHHHHCCHHHCCCEEEEECCCCCEEEEEEECCEEEECCCCCH
AEIGAGSVIGEIAFLTGSPRTADVVAARDSIVYRIDRPAYDALCAEVDGLPQAMAAELAD
HHHCCCHHHEEEEEECCCCCCCEEEEECCCEEEEECCCHHHHHHHHHCCCHHHHHHHHHH
RLAKTSARVTPDPGRPPARTFCILPAAGAPLPERFVPDLTRAIEAHHSVALVTEAAFREA
HHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHH
LGERADPTTSDAIAWLNTQEQNAQIVLFVANPDASDWSRAALKQADQAVIVAQAVNYQDP
HCCCCCCCCCCEEEEECCCCCCCEEEEEEECCCCCHHHHHHHHHCCCEEEEEEECCCCCH
SELEAFALQILPEQQRRLVLLHPHRMQKAPGTGRWLDTRPVFLHHHVALTGGDGDIARLG
HHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCCCCCCEEEEEEEEEECCCCCHHHHH
RFLSGRAVGLVLSGGGAFGVAHVGVYRAMNEMGLPVDIVGGTSVGSAMGGAIALGVPAEE
HHHCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCEEEECCCHHH
IGPRVEQIFVRSGAMRKITVPRFAFLDHKVLDGALMEHFGEEPIEDLWIPYYAVAADLSA
HCCHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHH
MDKTVIRRGPLWEAIRASSAIPGVLPPFFARDGRMLVDGGCIDNMPFRTMHGLKTGPNVV
HHHHHHHCCCHHHHHHHCCCCCCCCCHHHCCCCCEEEECCCCCCCCCHHHCCCCCCCCEE
VNVQKATNKIVHVDYASLPGRGELLRQTINPFAKTPPRVPGVISTVMRSLLVGQSEMLAD
EEEEHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHH
LAPHDLMIRPPGLKGAGFLAWNQHKLFYEMAYKHALGVFAEKGNDSDTAMAALRSIV
CCCCCEEEECCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCC
>Mature Secondary Structure
MQSDFAPEGLFKILQGPAFARLSQTPVERGHKMITAGSDAEAMYLVFSGRFRVERDGVDL
CCCCCCHHHHHHHHCCCHHHHHHCCHHHCCCEEEEECCCCCEEEEEEECCEEEECCCCCH
AEIGAGSVIGEIAFLTGSPRTADVVAARDSIVYRIDRPAYDALCAEVDGLPQAMAAELAD
HHHCCCHHHEEEEEECCCCCCCEEEEECCCEEEEECCCHHHHHHHHHCCCHHHHHHHHHH
RLAKTSARVTPDPGRPPARTFCILPAAGAPLPERFVPDLTRAIEAHHSVALVTEAAFREA
HHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHH
LGERADPTTSDAIAWLNTQEQNAQIVLFVANPDASDWSRAALKQADQAVIVAQAVNYQDP
HCCCCCCCCCCEEEEECCCCCCCEEEEEEECCCCCHHHHHHHHHCCCEEEEEEECCCCCH
SELEAFALQILPEQQRRLVLLHPHRMQKAPGTGRWLDTRPVFLHHHVALTGGDGDIARLG
HHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCCCCCCEEEEEEEEEECCCCCHHHHH
RFLSGRAVGLVLSGGGAFGVAHVGVYRAMNEMGLPVDIVGGTSVGSAMGGAIALGVPAEE
HHHCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCEEEECCCHHH
IGPRVEQIFVRSGAMRKITVPRFAFLDHKVLDGALMEHFGEEPIEDLWIPYYAVAADLSA
HCCHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHH
MDKTVIRRGPLWEAIRASSAIPGVLPPFFARDGRMLVDGGCIDNMPFRTMHGLKTGPNVV
HHHHHHHCCCHHHHHHHCCCCCCCCCHHHCCCCCEEEECCCCCCCCCHHHCCCCCCCCEE
VNVQKATNKIVHVDYASLPGRGELLRQTINPFAKTPPRVPGVISTVMRSLLVGQSEMLAD
EEEEHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHH
LAPHDLMIRPPGLKGAGFLAWNQHKLFYEMAYKHALGVFAEKGNDSDTAMAALRSIV
CCCCCEEEECCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]