| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
Click here to switch to the map view.
The map label for this gene is 89053414
Identifier: 89053414
GI number: 89053414
Start: 880364
End: 881038
Strand: Reverse
Name: 89053414
Synonym: Jann_0923
Alternate gene names: NA
Gene position: 881038-880364 (Counterclockwise)
Preceding gene: 89053415
Following gene: 89053413
Centisome position: 20.4
GC content: 69.33
Gene sequence:
>675_bases ATGGCCCACCGCGCCAAGGGGGAGCCGTCGGCCTATGCCAGTGCGCCCGCCTATGATGACGGACGGCTTGACGCGCCCGC CGCCCTGCGCAACCGCGATGCGTTGACGGCGGCCTTGACCACACTCGCGCCAGACGGTCGCGCGTTGGAAATCGCGTCCG GCACCGGCCAGCACGTCATCCGCTTTGCCCCTGCGATGCCGGGCTTGCACTGGCAGCCCACGGACCCCGACCCGGATCGC CGCGCGTCCATCGCCGCCTGGATGGCGGCGGAACCTGCGCCCAACATCGCCGCTCCGATCCATCTGGATGCTTGCGCGCC CGGGTGGGCGGCGCAGCACGATCCCTTTGACATAATCTTCCTCGCCAACCTCCTGCACCTTGTCCCCGATGCGGCGGCGA AAATCTGCCTGACAGAGATGGCCCATGCCCTGGCCCCAGGTGGGTGCGCATTGGTCTACGGGCCGTTCCTGCGCGACGGC AAGACCACGTCCGAGGGCGATGCGGCGTTTGACGCCCGCCTCAAGGTCGAAAACCCCGGCGCGGGGTACAAGGACCTGGC TTGGGTGATGGACATCTGGCGCGCAGCTGGCCTCACCCCCGCCCCGCCGCAGGCCATGCCTGCCAACAACCTGCTCCTCC GCGCGACCCGTTCCGCCGCTTCGGACGTGACGTAA
Upstream 100 bases:
>100_bases AGCAGGCCGCCGAGATCGTCGCGGGCTGCGGCATGATGGAGGCGTTCATGACCCACATGTCCTCATCCGGCGCGCTTCAG ATCCTGATGCAGGACGGCTG
Downstream 100 bases:
>100_bases ACACACGTTTCGCTTTCCTGTAATCCGGTGGTAAGTCACGTTAATCAACTCGCCCGCACGATGTGCGCGGGTCCAGACCA GACGTGAAGACCGGAAAGAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 224; Mature: 223
Protein sequence:
>224_residues MAHRAKGEPSAYASAPAYDDGRLDAPAALRNRDALTAALTTLAPDGRALEIASGTGQHVIRFAPAMPGLHWQPTDPDPDR RASIAAWMAAEPAPNIAAPIHLDACAPGWAAQHDPFDIIFLANLLHLVPDAAAKICLTEMAHALAPGGCALVYGPFLRDG KTTSEGDAAFDARLKVENPGAGYKDLAWVMDIWRAAGLTPAPPQAMPANNLLLRATRSAASDVT
Sequences:
>Translated_224_residues MAHRAKGEPSAYASAPAYDDGRLDAPAALRNRDALTAALTTLAPDGRALEIASGTGQHVIRFAPAMPGLHWQPTDPDPDR RASIAAWMAAEPAPNIAAPIHLDACAPGWAAQHDPFDIIFLANLLHLVPDAAAKICLTEMAHALAPGGCALVYGPFLRDG KTTSEGDAAFDARLKVENPGAGYKDLAWVMDIWRAAGLTPAPPQAMPANNLLLRATRSAASDVT >Mature_223_residues AHRAKGEPSAYASAPAYDDGRLDAPAALRNRDALTAALTTLAPDGRALEIASGTGQHVIRFAPAMPGLHWQPTDPDPDRR ASIAAWMAAEPAPNIAAPIHLDACAPGWAAQHDPFDIIFLANLLHLVPDAAAKICLTEMAHALAPGGCALVYGPFLRDGK TTSEGDAAFDARLKVENPGAGYKDLAWVMDIWRAAGLTPAPPQAMPANNLLLRATRSAASDVT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI93102387, Length=201, Percent_Identity=35.3233830845771, Blast_Score=107, Evalue=1e-23, Organism=Homo sapiens, GI93102391, Length=142, Percent_Identity=35.2112676056338, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI71998087, Length=204, Percent_Identity=32.843137254902, Blast_Score=110, Evalue=6e-25, Organism=Drosophila melanogaster, GI28574095, Length=196, Percent_Identity=31.1224489795918, Blast_Score=92, Evalue=3e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23480; Mature: 23349
Theoretical pI: Translated: 5.86; Mature: 5.86
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAHRAKGEPSAYASAPAYDDGRLDAPAALRNRDALTAALTTLAPDGRALEIASGTGQHVI CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHCCCCCEEEEECCCCCEEE RFAPAMPGLHWQPTDPDPDRRASIAAWMAAEPAPNIAAPIHLDACAPGWAAQHDPFDIIF EECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCCHHHH LANLLHLVPDAAAKICLTEMAHALAPGGCALVYGPFLRDGKTTSEGDAAFDARLKVENPG HHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEEECCHHCCCCCCCCCCCEEEEEEEECCCC AGYKDLAWVMDIWRAAGLTPAPPQAMPANNLLLRATRSAASDVT CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECHHHCCCCC >Mature Secondary Structure AHRAKGEPSAYASAPAYDDGRLDAPAALRNRDALTAALTTLAPDGRALEIASGTGQHVI CCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHCCCCCEEEEECCCCCEEE RFAPAMPGLHWQPTDPDPDRRASIAAWMAAEPAPNIAAPIHLDACAPGWAAQHDPFDIIF EECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCCHHHH LANLLHLVPDAAAKICLTEMAHALAPGGCALVYGPFLRDGKTTSEGDAAFDARLKVENPG HHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEEECCHHCCCCCCCCCCCEEEEEEEECCCC AGYKDLAWVMDIWRAAGLTPAPPQAMPANNLLLRATRSAASDVT CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA