Definition Jannaschia sp. CCS1 chromosome, complete genome.
Accession NC_007802
Length 4,317,977

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The map label for this gene is 89053180

Identifier: 89053180

GI number: 89053180

Start: 662214

End: 662705

Strand: Reverse

Name: 89053180

Synonym: Jann_0689

Alternate gene names: NA

Gene position: 662705-662214 (Counterclockwise)

Preceding gene: 89053187

Following gene: 89053179

Centisome position: 15.35

GC content: 61.38

Gene sequence:

>492_bases
ATGGCCGTATGGCAATTGTTTTCGCCCTGCAGCGATGCCGCATCTTGCGGGCCACCGCATTCGAGACCAGAAGTAGGCCC
CATGGAATGGGTCAAAGTCTTGCATCTGTTGTGTGTTTTGGGGTGGATGACCGGCATCTTCGCTGCCCCGCGCGCGATCA
TCTTCTGGAAGCGGGAGTGGGCGGCGCAGGGCACCTTCGGCCCGACCGGGGACCTGACAATCCGCATCTACCGCTTTTCG
CTCGGGCTTGGCGTGATCGCGATTCTCTCGGGCCTGTATCTGGCGCATCTGTGGGGCTGGCCCGCATGGACGCACGCAAA
AATTACCGTCGTGGCGCTTCTGGCCGCGCATTACGGGTGGACCGGGCGGCTGGTCCTGCGCGCCCGCAAAGGCATTTTCA
CAGAATCGGACCGCTGGCTGCGCGTCTATAATGAGATCAGCGTCTTGGGCGCCATCGGCGTGTTGATCCTGGTCGTTTAC
AAGCCGTTCTGA

Upstream 100 bases:

>100_bases
TTTGCGGGCCAGAACGCGGGCGTCAGGTGTGGGCATTTGCATTGGCTTTCCTCCCATCATGCGGGCAAGATCCGCGAATT
GGTAAAATAATATAACCAAT

Downstream 100 bases:

>100_bases
TGCCACGGCAGATGCGCCCGGACATAGCAGACATCCGCACCGGCGCGGACCTGAGGCAATGGTATTGGCGCAAGGATGAG
TTGGTGGCCCACGCCCGCAC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 163; Mature: 162

Protein sequence:

>163_residues
MAVWQLFSPCSDAASCGPPHSRPEVGPMEWVKVLHLLCVLGWMTGIFAAPRAIIFWKREWAAQGTFGPTGDLTIRIYRFS
LGLGVIAILSGLYLAHLWGWPAWTHAKITVVALLAAHYGWTGRLVLRARKGIFTESDRWLRVYNEISVLGAIGVLILVVY
KPF

Sequences:

>Translated_163_residues
MAVWQLFSPCSDAASCGPPHSRPEVGPMEWVKVLHLLCVLGWMTGIFAAPRAIIFWKREWAAQGTFGPTGDLTIRIYRFS
LGLGVIAILSGLYLAHLWGWPAWTHAKITVVALLAAHYGWTGRLVLRARKGIFTESDRWLRVYNEISVLGAIGVLILVVY
KPF
>Mature_162_residues
AVWQLFSPCSDAASCGPPHSRPEVGPMEWVKVLHLLCVLGWMTGIFAAPRAIIFWKREWAAQGTFGPTGDLTIRIYRFSL
GLGVIAILSGLYLAHLWGWPAWTHAKITVVALLAAHYGWTGRLVLRARKGIFTESDRWLRVYNEISVLGAIGVLILVVYK
PF

Specific function: Unknown

COG id: COG1981

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18189; Mature: 18058

Theoretical pI: Translated: 10.04; Mature: 10.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVWQLFSPCSDAASCGPPHSRPEVGPMEWVKVLHLLCVLGWMTGIFAAPRAIIFWKREW
CCHHHHHCCCCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECHHH
AAQGTFGPTGDLTIRIYRFSLGLGVIAILSGLYLAHLWGWPAWTHAKITVVALLAAHYGW
CCCCCCCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC
TGRLVLRARKGIFTESDRWLRVYNEISVLGAIGVLILVVYKPF
CHHHHEEHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AVWQLFSPCSDAASCGPPHSRPEVGPMEWVKVLHLLCVLGWMTGIFAAPRAIIFWKREW
CHHHHHCCCCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECHHH
AAQGTFGPTGDLTIRIYRFSLGLGVIAILSGLYLAHLWGWPAWTHAKITVVALLAAHYGW
CCCCCCCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC
TGRLVLRARKGIFTESDRWLRVYNEISVLGAIGVLILVVYKPF
CHHHHEEHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA