| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
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The map label for this gene is 89053180
Identifier: 89053180
GI number: 89053180
Start: 662214
End: 662705
Strand: Reverse
Name: 89053180
Synonym: Jann_0689
Alternate gene names: NA
Gene position: 662705-662214 (Counterclockwise)
Preceding gene: 89053187
Following gene: 89053179
Centisome position: 15.35
GC content: 61.38
Gene sequence:
>492_bases ATGGCCGTATGGCAATTGTTTTCGCCCTGCAGCGATGCCGCATCTTGCGGGCCACCGCATTCGAGACCAGAAGTAGGCCC CATGGAATGGGTCAAAGTCTTGCATCTGTTGTGTGTTTTGGGGTGGATGACCGGCATCTTCGCTGCCCCGCGCGCGATCA TCTTCTGGAAGCGGGAGTGGGCGGCGCAGGGCACCTTCGGCCCGACCGGGGACCTGACAATCCGCATCTACCGCTTTTCG CTCGGGCTTGGCGTGATCGCGATTCTCTCGGGCCTGTATCTGGCGCATCTGTGGGGCTGGCCCGCATGGACGCACGCAAA AATTACCGTCGTGGCGCTTCTGGCCGCGCATTACGGGTGGACCGGGCGGCTGGTCCTGCGCGCCCGCAAAGGCATTTTCA CAGAATCGGACCGCTGGCTGCGCGTCTATAATGAGATCAGCGTCTTGGGCGCCATCGGCGTGTTGATCCTGGTCGTTTAC AAGCCGTTCTGA
Upstream 100 bases:
>100_bases TTTGCGGGCCAGAACGCGGGCGTCAGGTGTGGGCATTTGCATTGGCTTTCCTCCCATCATGCGGGCAAGATCCGCGAATT GGTAAAATAATATAACCAAT
Downstream 100 bases:
>100_bases TGCCACGGCAGATGCGCCCGGACATAGCAGACATCCGCACCGGCGCGGACCTGAGGCAATGGTATTGGCGCAAGGATGAG TTGGTGGCCCACGCCCGCAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 163; Mature: 162
Protein sequence:
>163_residues MAVWQLFSPCSDAASCGPPHSRPEVGPMEWVKVLHLLCVLGWMTGIFAAPRAIIFWKREWAAQGTFGPTGDLTIRIYRFS LGLGVIAILSGLYLAHLWGWPAWTHAKITVVALLAAHYGWTGRLVLRARKGIFTESDRWLRVYNEISVLGAIGVLILVVY KPF
Sequences:
>Translated_163_residues MAVWQLFSPCSDAASCGPPHSRPEVGPMEWVKVLHLLCVLGWMTGIFAAPRAIIFWKREWAAQGTFGPTGDLTIRIYRFS LGLGVIAILSGLYLAHLWGWPAWTHAKITVVALLAAHYGWTGRLVLRARKGIFTESDRWLRVYNEISVLGAIGVLILVVY KPF >Mature_162_residues AVWQLFSPCSDAASCGPPHSRPEVGPMEWVKVLHLLCVLGWMTGIFAAPRAIIFWKREWAAQGTFGPTGDLTIRIYRFSL GLGVIAILSGLYLAHLWGWPAWTHAKITVVALLAAHYGWTGRLVLRARKGIFTESDRWLRVYNEISVLGAIGVLILVVYK PF
Specific function: Unknown
COG id: COG1981
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18189; Mature: 18058
Theoretical pI: Translated: 10.04; Mature: 10.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAVWQLFSPCSDAASCGPPHSRPEVGPMEWVKVLHLLCVLGWMTGIFAAPRAIIFWKREW CCHHHHHCCCCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECHHH AAQGTFGPTGDLTIRIYRFSLGLGVIAILSGLYLAHLWGWPAWTHAKITVVALLAAHYGW CCCCCCCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC TGRLVLRARKGIFTESDRWLRVYNEISVLGAIGVLILVVYKPF CHHHHEEHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure AVWQLFSPCSDAASCGPPHSRPEVGPMEWVKVLHLLCVLGWMTGIFAAPRAIIFWKREW CHHHHHCCCCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECHHH AAQGTFGPTGDLTIRIYRFSLGLGVIAILSGLYLAHLWGWPAWTHAKITVVALLAAHYGW CCCCCCCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC TGRLVLRARKGIFTESDRWLRVYNEISVLGAIGVLILVVYKPF CHHHHEEHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA