Definition Jannaschia sp. CCS1 chromosome, complete genome.
Accession NC_007802
Length 4,317,977

Click here to switch to the map view.

The map label for this gene is 89053179

Identifier: 89053179

GI number: 89053179

Start: 661612

End: 662214

Strand: Reverse

Name: 89053179

Synonym: Jann_0688

Alternate gene names: NA

Gene position: 662214-661612 (Counterclockwise)

Preceding gene: 89053180

Following gene: 89053178

Centisome position: 15.34

GC content: 62.35

Gene sequence:

>603_bases
ATGCCACGGCAGATGCGCCCGGACATAGCAGACATCCGCACCGGCGCGGACCTGAGGCAATGGTATTGGCGCAAGGATGA
GTTGGTGGCCCACGCCCGCACCCTTGGCCTGAAGCGCAGCGGCGCGAAGTTCACCATCCTCGACCGCATCGCCCATTTCC
TCGACACCGGCGCGCGGGATCTGCCCGAGGCTCCAGCCCCAAAACCCACGTCTGACTTCGATTGGCACAGCGCCAAGCTG
ACGCCAGACACAATCCTGACCGACAGTTACAAAAACACCCAGAACGTGCGCCGGTTCTTCAAGGCGCAGTTGGGGCCCAG
GTTCGCTTTCTCCATCCCGTTGATGGCCTGGCTGAAGGAGAACAGCGGGAAAACGCTGAGCGACGCCTGCGCAGTCTGGC
GCGACTTGCAGGCGGAGCGGCGCAGGCCCGGCTGGCAAAGCGACATCAAGGGCCACAACCAGTTCAACCAATACACACGG
GATTTTCTCGCCGCCCATCCAGATCTCGGCATGGATGATGTGCGCCGGGTCTGGGCCAGGAAGATCCAGCAGCCGTCCCC
CGATGGGCGGCACATCTATGAACCGTCGGATCTTGACCTTTAA

Upstream 100 bases:

>100_bases
GCATTTTCACAGAATCGGACCGCTGGCTGCGCGTCTATAATGAGATCAGCGTCTTGGGCGCCATCGGCGTGTTGATCCTG
GTCGTTTACAAGCCGTTCTG

Downstream 100 bases:

>100_bases
GCTCCCCTCATTGTGGCGTGCATCTTCGCGGGGCTTCGGTATCTTGTGGGCATGAAACATCTTATCCCCGTGCTGCTCAT
CGCCCTCTCCACCACCCCCG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 200; Mature: 199

Protein sequence:

>200_residues
MPRQMRPDIADIRTGADLRQWYWRKDELVAHARTLGLKRSGAKFTILDRIAHFLDTGARDLPEAPAPKPTSDFDWHSAKL
TPDTILTDSYKNTQNVRRFFKAQLGPRFAFSIPLMAWLKENSGKTLSDACAVWRDLQAERRRPGWQSDIKGHNQFNQYTR
DFLAAHPDLGMDDVRRVWARKIQQPSPDGRHIYEPSDLDL

Sequences:

>Translated_200_residues
MPRQMRPDIADIRTGADLRQWYWRKDELVAHARTLGLKRSGAKFTILDRIAHFLDTGARDLPEAPAPKPTSDFDWHSAKL
TPDTILTDSYKNTQNVRRFFKAQLGPRFAFSIPLMAWLKENSGKTLSDACAVWRDLQAERRRPGWQSDIKGHNQFNQYTR
DFLAAHPDLGMDDVRRVWARKIQQPSPDGRHIYEPSDLDL
>Mature_199_residues
PRQMRPDIADIRTGADLRQWYWRKDELVAHARTLGLKRSGAKFTILDRIAHFLDTGARDLPEAPAPKPTSDFDWHSAKLT
PDTILTDSYKNTQNVRRFFKAQLGPRFAFSIPLMAWLKENSGKTLSDACAVWRDLQAERRRPGWQSDIKGHNQFNQYTRD
FLAAHPDLGMDDVRRVWARKIQQPSPDGRHIYEPSDLDL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23168; Mature: 23037

Theoretical pI: Translated: 10.12; Mature: 10.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRQMRPDIADIRTGADLRQWYWRKDELVAHARTLGLKRSGAKFTILDRIAHFLDTGARD
CCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHCCCCC
LPEAPAPKPTSDFDWHSAKLTPDTILTDSYKNTQNVRRFFKAQLGPRFAFSIPLMAWLKE
CCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHH
NSGKTLSDACAVWRDLQAERRRPGWQSDIKGHNQFNQYTRDFLAAHPDLGMDDVRRVWAR
CCCCCHHHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHH
KIQQPSPDGRHIYEPSDLDL
HHCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PRQMRPDIADIRTGADLRQWYWRKDELVAHARTLGLKRSGAKFTILDRIAHFLDTGARD
CCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHCCCCC
LPEAPAPKPTSDFDWHSAKLTPDTILTDSYKNTQNVRRFFKAQLGPRFAFSIPLMAWLKE
CCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHH
NSGKTLSDACAVWRDLQAERRRPGWQSDIKGHNQFNQYTRDFLAAHPDLGMDDVRRVWAR
CCCCCHHHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHH
KIQQPSPDGRHIYEPSDLDL
HHCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA