| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
Click here to switch to the map view.
The map label for this gene is engB
Identifier: 89053125
GI number: 89053125
Start: 606486
End: 607142
Strand: Reverse
Name: engB
Synonym: Jann_0634
Alternate gene names: 89053125
Gene position: 607142-606486 (Counterclockwise)
Preceding gene: 89053126
Following gene: 89053124
Centisome position: 14.06
GC content: 65.6
Gene sequence:
>657_bases ATGACCACCCTGCCCTTTCCGCTGGCCGAGGCCCCCGATGCATTGACCGAAGAACGGGGTCGCAAATTGTTCGCGGGCAA CACCGACTTCCTCAAGGGCGTCGTGGCGATGGACGGCCTGCCGCCCGCCGACCGGATCGAGGTTTGCTTTGCGGGCCGCT CCAACGTCGGCAAATCGACGCTGATCAACGCGCTGACGGGCCGCAAAGGCCTGGCGCGGGCCTCCAACACGCCGGGCCGC ACGCAGGAAATCAACTACTTCACCTTGCTCGACAGCCACTACCTCGTGGACCTTCCCGGCTATGGCTATGCCGAGGCCCC GCTGCATGTCGTGCAGCAATGGCAGGCCCTGCTGAAATCCTACCTCCAGGGGCGCGCCACCCTGCGCCGCGCATTCGTGT TGATCGACGCGCGCCATGGCGTGAAGGCCGTCGATGAAGAGATCATGAAGCTCCTCGACATCGCCGCGGTCCCGTTCCAG ACCGTTCTGACCAAATCCGACAAGGTGAAGGGCCGCGACCGCGACGCCTCCCTCGCCCGCACCCGCAAGGCCCTCGCCAA CCACCCCGCGGCCTACCCCGAGATCATCCTCACCTCGTCCGAGAAGGGCGATGGCATCCCCACCTTGCGGGCCACGATTG CGACGATTGAGACCTGA
Upstream 100 bases:
>100_bases GTCTTCTGGAGATCGCGTGGTGGGACTGGCCCGCCGACAAGATCACCCGTAACCTGAACGCCATTCGCGGCGCTGACCTG CCCGCGCTGGAGGCTGCGAC
Downstream 100 bases:
>100_bases GCACTCCTTCCCCGTTCTCTCAATATCCCGGGGTCTGGGGCAGCGCCCCTGCGCGCCTTTGGCGCAATAAAAGACTCAGC ACCTTCACACTGACGCGCAC
Product: ribosome biogenesis GTP-binding protein YsxC
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 218; Mature: 217
Protein sequence:
>218_residues MTTLPFPLAEAPDALTEERGRKLFAGNTDFLKGVVAMDGLPPADRIEVCFAGRSNVGKSTLINALTGRKGLARASNTPGR TQEINYFTLLDSHYLVDLPGYGYAEAPLHVVQQWQALLKSYLQGRATLRRAFVLIDARHGVKAVDEEIMKLLDIAAVPFQ TVLTKSDKVKGRDRDASLARTRKALANHPAAYPEIILTSSEKGDGIPTLRATIATIET
Sequences:
>Translated_218_residues MTTLPFPLAEAPDALTEERGRKLFAGNTDFLKGVVAMDGLPPADRIEVCFAGRSNVGKSTLINALTGRKGLARASNTPGR TQEINYFTLLDSHYLVDLPGYGYAEAPLHVVQQWQALLKSYLQGRATLRRAFVLIDARHGVKAVDEEIMKLLDIAAVPFQ TVLTKSDKVKGRDRDASLARTRKALANHPAAYPEIILTSSEKGDGIPTLRATIATIET >Mature_217_residues TTLPFPLAEAPDALTEERGRKLFAGNTDFLKGVVAMDGLPPADRIEVCFAGRSNVGKSTLINALTGRKGLARASNTPGRT QEINYFTLLDSHYLVDLPGYGYAEAPLHVVQQWQALLKSYLQGRATLRRAFVLIDARHGVKAVDEEIMKLLDIAAVPFQT VLTKSDKVKGRDRDASLARTRKALANHPAAYPEIILTSSEKGDGIPTLRATIATIET
Specific function: Necessary for normal cell division and for the maintenance of normal septation
COG id: COG0218
COG function: function code R; Predicted GTPase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 G (guanine nucleotide-binding) domain
Homologues:
Organism=Homo sapiens, GI56549685, Length=191, Percent_Identity=34.0314136125654, Blast_Score=107, Evalue=8e-24, Organism=Escherichia coli, GI145693205, Length=190, Percent_Identity=42.1052631578947, Blast_Score=135, Evalue=2e-33, Organism=Saccharomyces cerevisiae, GI6320543, Length=193, Percent_Identity=31.6062176165803, Blast_Score=78, Evalue=1e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): ENGB_JANSC (Q28UR1)
Other databases:
- EMBL: CP000264 - RefSeq: YP_508576.1 - ProteinModelPortal: Q28UR1 - SMR: Q28UR1 - STRING: Q28UR1 - GeneID: 3933076 - GenomeReviews: CP000264_GR - KEGG: jan:Jann_0634 - eggNOG: COG0218 - HOGENOM: HBG447097 - OMA: RTQELIF - PhylomeDB: Q28UR1 - ProtClustDB: PRK00454 - BioCyc: JSP290400:JANN_0634-MONOMER - GO: GO:0005622 - HAMAP: MF_00321 - InterPro: IPR019987 - InterPro: IPR002917 - TIGRFAMs: TIGR03598
Pfam domain/function: PF01926 MMR_HSR1
EC number: NA
Molecular weight: Translated: 23743; Mature: 23611
Theoretical pI: Translated: 9.60; Mature: 9.60
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTLPFPLAEAPDALTEERGRKLFAGNTDFLKGVVAMDGLPPADRIEVCFAGRSNVGKST CCCCCCCCCCCCHHHHHHHCCEEECCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHH LINALTGRKGLARASNTPGRTQEINYFTLLDSHYLVDLPGYGYAEAPLHVVQQWQALLKS HHHHHHCCCCCCCCCCCCCCCEECEEEEEECCCEEEECCCCCCCHHHHHHHHHHHHHHHH YLQGRATLRRAFVLIDARHGVKAVDEEIMKLLDIAAVPFQTVLTKSDKVKGRDRDASLAR HHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCHHHHHH TRKALANHPAAYPEIILTSSEKGDGIPTLRATIATIET HHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHEEECCC >Mature Secondary Structure TTLPFPLAEAPDALTEERGRKLFAGNTDFLKGVVAMDGLPPADRIEVCFAGRSNVGKST CCCCCCCCCCCHHHHHHHCCEEECCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHH LINALTGRKGLARASNTPGRTQEINYFTLLDSHYLVDLPGYGYAEAPLHVVQQWQALLKS HHHHHHCCCCCCCCCCCCCCCEECEEEEEECCCEEEECCCCCCCHHHHHHHHHHHHHHHH YLQGRATLRRAFVLIDARHGVKAVDEEIMKLLDIAAVPFQTVLTKSDKVKGRDRDASLAR HHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCHHHHHH TRKALANHPAAYPEIILTSSEKGDGIPTLRATIATIET HHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA